Package: MAQCsubset

Version: 1.0.2

Command: /home/biocbuild/bbs-2.0-bioc/R/bin/R CMD check MAQCsubset_1.0.2.tar.gz

RetCode: 0

Time: 53.2 seconds

Status: WARNINGS

CheckDir: MAQCsubset.Rcheck

Warnings: 3

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.0-data-experiment/meat/MAQCsubset.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'MAQCsubset/DESCRIPTION' ... OK
* this is package 'MAQCsubset' version '1.0.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MAQCsubset' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... WARNING
Vignettes with missing or empty \VignetteIndexEntry:
[1] "maqcNotes"
See the information on INDEX files and package subdirectories in the
chapter 'Creating R packages' of the 'Writing R Extensions' manual.
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... WARNING
'library' or 'require' calls not declared from:
  genefilter
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  proboscis
Undocumented S4 methods:
  generic 'lines' and siglist 'proboStruct'
  generic 'plot' and siglist 'proboStruct'
  generic 'show' and siglist 'proboStruct'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating MAQCsubset-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating MAQCsubset-manual.tex ... OK
* checking MAQCsubset-manual.tex ... OK

WARNING: There were 3 warnings, see
  /home/biocbuild/bbs-2.0-data-experiment/meat/MAQCsubset.Rcheck/00check.log
for details

* Installing *source* package 'MAQCsubset' ...
** R
** data
** inst
** save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

[1] "proboStruct"
[1] "show"
Creating a new generic function for "plot" in "MAQCsubset"
[1] "plot"
Creating a new generic function for "lines" in "MAQCsubset"
[1] "lines"
** help
 >>> Building/Updating help pages for package 'MAQCsubset'
     Formats: text html latex example 
  MAQCsubset                        text    html    latex   example
  proboStruct-class                 text    html    latex   example
** building package indices ...
* DONE (MAQCsubset)