Package: vsn

Version: 2.2.0

Command: /loc/biocbuild/bbs-2.0-bioc/R/bin/R CMD build vsn

RetCode: 0

Time: 616.1 seconds

Status: OK

PackageFile: vsn_2.2.0.tar.gz

* checking for file 'vsn/DESCRIPTION' ... OK
* preparing 'vsn':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'vsn' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c init.c -o init.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c vsn2.c -o vsn2.o
vsn2.c: In function `vsn2_trsf':
vsn2.c:445: warning: unused variable `dimy'
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c vsn.c -o vsn.o
gcc -std=gnu99 -shared -L/usr/local/lib -o vsn.so init.o vsn2.o vsn.o   -L/loc/biocbuild/bbs-2.0-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: limma
Creating a new generic function for "logLik" in "vsn"
** help
 >>> Building/Updating help pages for package 'vsn'
     Formats: text html latex example 
  class.vsn                         text    html    latex   example
  class.vsnInput                    text    html    latex   example
  getIntensityMatrix                text    html    latex   example
  justvsn                           text    html    latex   example
  kidney                            text    html    latex   example
  lymphoma                          text    html    latex   example
  meanSdPlot                        text    html    latex   example
  normalize.AffyBatch.vsn           text    html    latex   example
  sagmbSimulateData                 text    html    latex   example
  vsn                               text    html    latex   example
  vsn2                              text    html    latex   example
  vsn2trsf                          text    html    latex   example
  vsnLikelihood                     text    html    latex   example
  vsnPlotPar                        text    html    latex   example
  vsnh                              text    html    latex   example
** building package indices ...
* DONE (vsn)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'vsn_2.2.0.tar.gz'