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splicegear

1.8.0

Laurent
Last Changed Date: 2007-04-24 11:21:48 -0700
Last Changed Rev: 24214
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
lemming Windows Server 2003 (32-bit) x64  OK  OK [ OK ]
Package: splicegear
Version: 1.8.0
Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD INSTALL --build --library=splicegear.buildbin-libdir splicegear_1.8.0.tar.gz
RetCode: 0
Time: 17.2 seconds
Status: OK
PackageFile: splicegear_1.8.0.zip

Command output

installing R.css in D:/biocbld/bbs-2.0-bioc/meat/splicegear.buildbin-libdir

Using auto-selected zip options 'splicegear-ZIPDATA=zip'

---------- Making package splicegear ------------
  adding build stamp to DESCRIPTION
  installing R files
  save image
Loading required package: grid
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: XML
Loading required package: annotate
[1] TRUE
[1] "SpliceSites"
Warning messages:
1: The phenoData class is deprecated, use AnnotatedDataFrame (with ExpressionSet) instead 
2: The phenoData class is deprecated, use AnnotatedDataFrame (with ExpressionSet) instead 
3: The phenoData class is deprecated, use AnnotatedDataFrame (with ExpressionSet) instead 
[1] "show"
[1] "plot"
[1] "plot"
[1] "initialize"
[1] "grid.plot"
[1] "grid.plot"
[1] "Probes"
[1] "initialize"
[1] "show"
[1] "plot"
[1] "plot"
[1] "grid.plot"
[1] "grid.plot"
[1] "SpliceSitesGenomic"
[1] "plot"
[1] TRUE
[1] "SpliceExprSet"
Warning message:
The exprSet class is deprecated, use ExpressionSet instead 
[1] "spliceSites"
[1] "spliceSites"
[1] "exprs"
[1] "exprs<-"
[1] "show"
[1] "plot"
[1] "grid.plot"
  installing inst files
  installing data files
  installing man source files
  installing indices
  zipping data
  installing help
 >>> Building/Updating help pages for package 'splicegear'
     Formats: text html latex example chm 
  Probes-class                      text    html    latex   example chm
  SpliceExprSet-class               text    html    latex   example chm
  SpliceSites-class                 text    html    latex   example chm
  SpliceSitesGenomic-class          text    html    latex   example chm
  as.data.frame.SpliceExprSet       text    html    latex   example chm
  barplot.SpliceSites               text    html    latex   example chm
  buildSpliceSites                  text    html    latex   example chm
  getRelSignStrength                text    html    latex   example chm
  grid.helpers                      text    html    latex           chm
  grid.plot.SpliceSites             text    html    latex   example chm
  isProbeOnSpliceSite               text    html    latex   example chm
  matchprobes2Probes                text    html    latex           chm
  plot.SpliceExprSet                text    html    latex   example chm
  plot.SpliceSites                  text    html    latex   example chm
  plot.SpliceSitesGenomic           text    html    latex   example chm
  sort.SpliceExprSet                text    html    latex   example chm
  spliceset                         text    html    latex   example chm
  split.SpliceSites                 text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.0-bioc\meat\R.INSTALL.2828\splicegear\chm\splicegear.chm





Compile time: 0 minutes, 0 seconds

19	Topics

105	Local links

0	Internet links

1	Graphic





Created d:\biocbld\bbs-2.0-bioc\meat\R.INSTALL.2828\splicegear\chm\splicegear.chm, 36,573 bytes

Compression decreased file by 38,159 bytes.

  adding MD5 sums

packaged installation of package 'splicegear' as splicegear_1.8.0.zip
* DONE (splicegear)