Package: codelink

Version: 1.4.0

Command: /loc/biocbuild/bbs-2.0-bioc/R/bin/R CMD check codelink_1.4.0.tar.gz

RetCode: 0

Time: 136.7 seconds

Status: OK

CheckDir: codelink.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/bbs-2.0-bioc/meat/codelink.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'codelink/DESCRIPTION' ... OK
* this is package 'codelink' version '1.4.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'codelink' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating codelink-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating codelink-manual.tex ... OK
* checking codelink-manual.tex ... OK

* Installing *source* package 'codelink' ...
** R
** data
** inst
** save image
Loading required package: limma
Loading required package: annotate
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** preparing package for lazy loading
Loading required package: limma
Loading required package: annotate
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
 >>> Building/Updating help pages for package 'codelink'
     Formats: text html latex example 
  Codelink-class                    text    html    latex   example
  SNR                               text    html    latex   example
  arrayNew                          text    html    latex   example
  arraySize                         text    html    latex   example
  as.matrix.Codelink                text    html    latex   example
  bkgdCorrect                       text    html    latex   example
  codelink.example                  text    html    latex
  createWeights                     text    html    latex   example
  cutCV                             text    html    latex   example
  decDetect                         text    html    latex   example
  dim.Codelink                      text    html    latex   example
  fc2Cond                           text    html    latex   example
  imageCodelink                     text    html    latex   example
  logCodelink                       text    html    latex   example
  mergeArray                        text    html    latex   example
  na2false                          text    html    latex   example
  normalize                         text    html    latex   example
  normalize.loess                   text    html    latex   example
  plotCV                            text    html    latex   example
  plotCorrelation                   text    html    latex   example
  plotDensities                     text    html    latex   example
  plotMA                            text    html    latex   example
  printHead                         text    html    latex   example
  readCodelink                      text    html    latex   example
  readHeader                        text    html    latex   example
  readHeaderXLS                     text    html    latex   example
  reportCodelink                    text    html    latex   example
  selCV                             text    html    latex   example
  writeCodelink                     text    html    latex   example
** building package indices ...
* DONE (codelink)