Package: bgx

Version: 1.0.21

Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check bgx_1.0.21.tar.gz

RetCode: 0

Time: 351.8 seconds

Status: OK

CheckDir: bgx.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.0-bioc/meat/bgx.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'bgx/DESCRIPTION' ... OK
* this is package 'bgx' version '1.0.21'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'bgx' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating bgx-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating bgx-manual.tex ... OK
* checking bgx-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.0-bioc/meat/bgx.Rcheck


---------- Making package bgx ------------

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************

  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making qnorm.d from qnorm.c
making bgx.d from bgx.cc
making bgx_frontend.d from bgx_frontend.cc
making rundir.d from rundir.cc
making sokal.d from sokal.cc
gcc  -I c:/boost_1_33_1 -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99 -DUSING_R -march=i386 -ffast-math -O3  -std=c99  -c qnorm.c -o qnorm.o
g++  -I c:/boost_1_33_1 -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2 -DUSING_R -march=i386 -ffast-math -O3  -c bgx.cc -o bgx.o
g++  -I c:/boost_1_33_1 -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2 -DUSING_R -march=i386 -ffast-math -O3  -c bgx_frontend.cc -o bgx_frontend.o
g++  -I c:/boost_1_33_1 -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2 -DUSING_R -march=i386 -ffast-math -O3  -c rundir.cc -o rundir.o
g++  -I c:/boost_1_33_1 -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2 -DUSING_R -march=i386 -ffast-math -O3  -c sokal.cc -o sokal.o
windres -I d:/biocbld/bbs-2.0-bioc/R/include  -i bgx_res.rc -o bgx_res.o
g++  -shared -s  -o bgx.dll bgx.def qnorm.o bgx.o bgx_frontend.o rundir.o sokal.o bgx_res.o  -Ld:/biocbld/bbs-2.0-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'bgx'
     Formats: text html latex example chm 
  analysis.bgx                      text    html    latex   example chm
  bgx                               text    html    latex   example chm
  mcmc.bgx                          text    html    latex   example chm
  readOutput.bgx                    text    html    latex   example chm
  saveAffinityPlot.bgx              text    html    latex   example chm
  setupVars.bgx                     text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.0-bioc\meat\bgx.Rcheck\00_pkg_src\bgx\chm\bgx.chm


Compile time: 0 minutes, 0 seconds
7	Topics
35	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-2.0-bioc\meat\bgx.Rcheck\00_pkg_src\bgx\chm\bgx.chm, 27,100 bytes
Compression decreased file by 4,842 bytes.
  preparing package bgx for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: gcrma
Loading required package: matchprobes
Loading required package: splines
  adding MD5 sums

* DONE (bgx)