Package: BufferedMatrix

Version: 1.0.1

Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check BufferedMatrix_1.0.1.tar.gz

RetCode: 0

Time: 87.8 seconds

Status: OK

CheckDir: BufferedMatrix.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.0-bioc/meat/BufferedMatrix.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'BufferedMatrix/DESCRIPTION' ... OK
* this is package 'BufferedMatrix' version '1.0.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BufferedMatrix' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating BufferedMatrix-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/cygdrive/d/biocbld/bbs-2.0-bioc/meat/BufferedMatrix.Rcheck/tests'
  Running 'Rcodetesting.R'
  Running 'c_code_level_tests.R'
  Running 'objectTesting.R'
  Running 'rawCalltesting.R'
make[1]: Leaving directory `/cygdrive/d/biocbld/bbs-2.0-bioc/meat/BufferedMatrix.Rcheck/tests'
 OK
* checking package vignettes in 'inst/doc' ... OK
* creating BufferedMatrix-manual.tex ... OK
* checking BufferedMatrix-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.0-bioc/meat/BufferedMatrix.Rcheck


---------- Making package BufferedMatrix ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making RBufferedMatrix.d from RBufferedMatrix.c
making doubleBufferedMatrix.d from doubleBufferedMatrix.c
making doubleBufferedMatrix_C_tests.d from doubleBufferedMatrix_C_tests.c
making init_package.d from init_package.c
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c RBufferedMatrix.c -o RBufferedMatrix.o
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c doubleBufferedMatrix.c -o doubleBufferedMatrix.o
doubleBufferedMatrix.c:3323: warning: 'sort_double' defined but not used
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c doubleBufferedMatrix_C_tests.c -o doubleBufferedMatrix_C_tests.o
doubleBufferedMatrix_C_tests.c: In function `dbm_c_tester':
doubleBufferedMatrix_C_tests.c:26: warning: implicit declaration of function `Rprintf'
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c init_package.c -o init_package.o
windres -I d:/biocbld/bbs-2.0-bioc/R/include  -i BufferedMatrix_res.rc -o BufferedMatrix_res.o
gcc  -shared -s  -o BufferedMatrix.dll BufferedMatrix.def RBufferedMatrix.o doubleBufferedMatrix.o doubleBufferedMatrix_C_tests.o init_package.o BufferedMatrix_res.o  -Ld:/biocbld/bbs-2.0-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  save image
[1] "buffer.dim"
[1] "is.ColMode"
[1] "is.RowMode"
[1] "RowMode"
[1] "ColMode"
[1] "set.buffer.dim"
[1] "prefix"
[1] "directory"
[1] "filenames"
[1] "duplicate"
[1] "ewApply"
[1] "pow"
[1] "Max"
[1] "Min"
[1] "Sum"
[1] "Var"
[1] "Sd"
[1] "rowMeans"
[1] "rowSums"
[1] "rowVars"
[1] "rowSd"
[1] "rowMax"
[1] "rowMin"
[1] "colMeans"
[1] "colSums"
[1] "colVars"
[1] "colSd"
[1] "colMax"
[1] "colMin"
[1] "colMedians"
[1] "colRanges"
[1] "colApply"
[1] "rowApply"
[1] "subBufferedMatrix"
[1] "rownames"
[1] "colnames"
[1] "colnames<-"
[1] "rownames<-"
[1] "ReadOnlyMode"
[1] "is.ReadOnlyMode"
[1] "memory.usage"
[1] "disk.usage"
[1] "AddColumn"
[1] "BufferedMatrix"
[1] "dim"
[1] "buffer.dim"
[1] "["
[1] "[<-"
[1] "show"
Creating a new generic function for "ncol" in "BufferedMatrix"
[1] "ncol"
Creating a new generic function for "nrow" in "BufferedMatrix"
[1] "nrow"
[1] "is.ColMode"
[1] "is.RowMode"
[1] "RowMode"
[1] "ColMode"
[1] "set.buffer.dim"
[1] "prefix"
[1] "directory"
[1] "filenames"
[1] "duplicate"
[1] "ewApply"
[1] "sqrt"
[1] "exp"
Creating a new generic function for "log" in "BufferedMatrix"
[1] "log"
[1] "pow"
[1] "Max"
[1] "Min"
Creating a new generic function for "mean" in "BufferedMatrix"
[1] "mean"
[1] "Sum"
[1] "Var"
[1] "Sd"
[1] "rowMeans"
[1] "rowSums"
[1] "rowVars"
[1] "rowSd"
[1] "rowMax"
[1] "rowMin"
[1] "colMeans"
[1] "colSums"
[1] "colVars"
[1] "colSd"
[1] "colMax"
[1] "colMin"
[1] "colMedians"
[1] "colRanges"
[1] "colApply"
[1] "rowApply"
Creating a new generic function for "as.matrix" in "BufferedMatrix"
[1] "as.matrix"
[1] "subBufferedMatrix"
[1] "rownames"
[1] "colnames"
[1] "colnames<-"
[1] "rownames<-"
[1] "dimnames"
[1] "dimnames<-"
[1] "ReadOnlyMode"
[1] "is.ReadOnlyMode"
[1] "memory.usage"
[1] "disk.usage"
[1] "AddColumn"
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'BufferedMatrix'
     Formats: text html latex example chm 
  BufferedMatrix-class              text    html    latex           chm
  as.BufferedMatrix                 text    html    latex           chm
  createBufferedMatrix              text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.0-bioc\meat\BufferedMatrix.Rcheck\00_pkg_src\BufferedMatrix\chm\BufferedMatrix.chm


Compile time: 0 minutes, 0 seconds
4	Topics
101	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-2.0-bioc\meat\BufferedMatrix.Rcheck\00_pkg_src\BufferedMatrix\chm\BufferedMatrix.chm, 22,961 bytes
Compression decreased file by 28,081 bytes.
  adding MD5 sums

* DONE (BufferedMatrix)