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Package 209/214 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
vsn2.2.0Wolfgang HuberLast Changed Date: 2007-04-24 11:21:48 -0700 Last Changed Rev: 24214 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | [ OK ] | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
churchill | Solaris 2.9 | sparc | OK | OK | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | OK | OK | |
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
derby | Mac OS X (10.4.9) | i686 | OK | OK |
Package: vsn |
Version: 2.2.0 |
Command: /home/biocbuild/bbs-2.0-bioc/R/bin/R CMD check vsn_2.2.0.tar.gz |
RetCode: 0 |
Time: 392.8 seconds |
Status: OK |
CheckDir: vsn.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/home/biocbuild/bbs-2.0-bioc/meat/vsn.Rcheck' * using R version 2.5.0 (2007-04-23) * checking for file 'vsn/DESCRIPTION' ... OK * this is package 'vsn' version '2.2.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'vsn' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable use of $BLAS_LIBS ... OK * creating vsn-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating vsn-manual.tex ... OK * checking vsn-manual.tex ... OK
vsn.Rcheck/00install.out:
* Installing *source* package 'vsn' ... ** libs gcc -std=gnu99 -I/home/biocbuild/bbs-2.0-bioc/R/include -I/home/biocbuild/bbs-2.0-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c init.c -o init.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.0-bioc/R/include -I/home/biocbuild/bbs-2.0-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c vsn2.c -o vsn2.o vsn2.c: In function 'vsn2_trsf': vsn2.c:445: warning: unused variable 'dimy' gcc -std=gnu99 -I/home/biocbuild/bbs-2.0-bioc/R/include -I/home/biocbuild/bbs-2.0-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c vsn.c -o vsn.o gcc -std=gnu99 -shared -L/usr/local/lib64 -o vsn.so init.o vsn2.o vsn.o -L/home/biocbuild/bbs-2.0-bioc/R/lib -lR ** R ** data ** inst ** preparing package for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: affy Loading required package: affyio Loading required package: limma Creating a new generic function for "logLik" in "vsn" ** help >>> Building/Updating help pages for package 'vsn' Formats: text html latex example class.vsn text html latex example class.vsnInput text html latex example getIntensityMatrix text html latex example justvsn text html latex example kidney text html latex example lymphoma text html latex example meanSdPlot text html latex example normalize.AffyBatch.vsn text html latex example sagmbSimulateData text html latex example vsn text html latex example vsn2 text html latex example vsn2trsf text html latex example vsnLikelihood text html latex example vsnPlotPar text html latex example vsnh text html latex example ** building package indices ... * DONE (vsn)