Package: topGO

Version: 1.2.0

Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check topGO_1.2.0.tar.gz

RetCode: 0

Time: 407.4 seconds

Status: OK

CheckDir: topGO.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.0-bioc/meat/topGO.Rcheck'
* using R version 2.5.0 (2007-04-23)
* checking for file 'topGO/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'topGO' version '1.2.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'topGO' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating topGO-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating topGO-manual.tex ... OK
* checking topGO-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.0-bioc/meat/topGO.Rcheck


---------- Making package topGO ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'topGO'
     Formats: text html latex example chm 
  GOFisherTest                      text    html    latex           chm
  GOKSTest                          text    html    latex           chm
  GOdata                            text    html    latex   example chm
  annFUN.hgu                        text    html    latex   example chm
  buildGOgraph.topology             text    html    latex           chm
  buildLevels                       text    html    latex   example chm
  classicCount-class                text    html    latex   example chm
  classicScore-class                text    html    latex   example chm
  elimCount-class                   text    html    latex   example chm
  elimScore-class                   text    html    latex   example chm
  getPvalues                        text    html    latex   example chm
  getSigGroups                      text    html    latex   example chm
  groupGOTerms                      text    html    latex   example chm
  groupStats-class                  text    html    latex   example chm
  inducedGraph                      text    html    latex   example chm
  mapGenes2GOgraph                  text    html    latex   example chm
  printGenes-methods                text    html    latex           chm
  printGraph-methods                text    html    latex   example chm
  reverseArch                       text    html    latex   example chm
  topGO-package                     text    html    latex           chm
  topGOdata-class                   text    html    latex   example chm
  topGOresult-class                 text    html    latex           chm
  weightCount-class                 text    html    latex   example chm
  weightScore-class                 text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.0-bioc\meat\topGO.Rcheck\00_pkg_src\topGO\chm\topGO.chm


Compile time: 0 minutes, 0 seconds
25	Topics
321	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-2.0-bioc\meat\topGO.Rcheck\00_pkg_src\topGO\chm\topGO.chm, 42,348 bytes
Compression decreased file by 103,899 bytes.
  preparing package topGO for lazy loading
Loading required package: graph
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: GO
Loading required package: annotate
Loading required package: SparseM
Creating a new generic function for "print" in "topGO"
  adding MD5 sums

* DONE (topGO)