Package: ScISI

Version: 1.8.0

Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD build ScISI

RetCode: 0

Time: 107.1 seconds

Status: OK

PackageFile: ScISI_1.8.0.tar.gz

* checking for file 'ScISI/DESCRIPTION' ... OK
* preparing 'ScISI':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.0-bioc/tmpdir/Rinst768001754


---------- Making package ScISI ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'ScISI'
     Formats: text html latex example chm 
  Desc-methods                      text    html    latex           chm
  ID-methods                        text    html    latex           chm
  JaccardCoef                       text    html    latex   example chm
  ScISI                             text    html    latex   example chm
  ScISI2html                        text    html    latex   example chm
  arp23                             text    html    latex   example chm
  arp23G                            text    html    latex   example chm
  arp23Orf                          text    html    latex   example chm
  arp23Y2HG                         text    html    latex   example chm
  calcGraphStats                    text    html    latex   example chm
  cfia                              text    html    latex   example chm
  cfiaOrf                           text    html    latex   example chm
  checkComplex                      text    html    latex   example chm
  checkSGN                          text    html    latex   example chm
  compBijection                     text    html    latex   example chm
  compareComplex                    text    html    latex   example chm
  createGODataFrame                 text    html    latex   example chm
  createGOMatrix                    text    html    latex   example chm
  createMipsDataFrame               text    html    latex   example chm
  createMipsMatrix                  text    html    latex   example chm
  createYeastDataObj                text    html    latex   example chm
  dataS                             text    html    latex   example chm
  eAt                               text    html    latex   example chm
  eAt2                              text    html    latex   example chm
  edgeProp                          text    html    latex   example chm
  egEBI16112                        text    html    latex   example chm
  expStats                          text    html    latex   example chm
  findSubComp                       text    html    latex   example chm
  gavin2mergeMG                     text    html    latex   example chm
  getAPMSData                       text    html    latex   example chm
  getGOInfo                         text    html    latex   example chm
  getLocOrfs                        text    html    latex   example chm
  getMipsInfo                       text    html    latex   example chm
  getURL-methods                    text    html    latex           chm
  graphSumStats                     text    html    latex   example chm
  ho2mergeMGG                       text    html    latex   example chm
  krogan2mergeMGGH                  text    html    latex   example chm
  list2Matrix                       text    html    latex   example chm
  locScISI                          text    html    latex   example chm
  mapping2SysG                      text    html    latex   example chm
  mappingsG                         text    html    latex   example chm
  maximizeSimilarity                text    html    latex   example chm
  meanDeg                           text    html    latex   example chm
  mergeBGMat                        text    html    latex   example chm
  mips2go                           text    html    latex   example chm
  nAt                               text    html    latex           chm
  nAtMap                            text    html    latex   example chm
  nucComp                           text    html    latex   example chm
  recCompSize                       text    html    latex   example chm
  redundantM                        text    html    latex   example chm
  rmByEvi                           text    html    latex   example chm
  runAlignment                      text    html    latex   example chm
  runCompareComplex                 text    html    latex   example chm
  subCompM                          text    html    latex   example chm
  sumStats                          text    html    latex   example chm
  unWantedComp                      text    html    latex   example chm
  xtraGO                            text    html    latex   example chm
  xtraGONodes                       text    html    latex   example chm
  yeastData-class                   text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.0-bioc\meat\ScISI\chm\ScISI.chm





Compile time: 0 minutes, 0 seconds

60	Topics

146	Local links

0	Internet links

1	Graphic





Created d:\biocbld\bbs-2.0-bioc\meat\ScISI\chm\ScISI.chm, 71,790 bytes

Compression decreased file by 86,348 bytes.

  preparing package ScISI for lazy loading
Loading required package: apComplex
Loading required package: graph
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RBGL
Loading required package: GO
Loading required package: GOstats
Loading required package: annotate
Loading required package: Category
Loading required package: KEGG
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: Matrix
Loading required package: lattice
Loading required package: Rgraphviz
Loading required package: geneplotter
KernSmooth 2.22 installed
Copyright M. P. Wand 1997

Attaching package: 'Rgraphviz'


	The following object(s) are masked from package:annotate :

	 toFile 

Loading required package: YEAST
Loading required package: xtable
  adding MD5 sums

* DONE (ScISI)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'ScISI_1.8.0.tar.gz'