CHECK report for ctc on liverpool

* checking for working latex ... OK * using log directory 'E:/biocbld/2.0d/Rpacks/ctc.Rcheck' * using R version 2.5.0 Under development (unstable) (2006-12-05 r40126) * checking for file 'ctc/DESCRIPTION' ... OK * this is package 'ctc' version '1.9.0' * checking package dependencies ... WARNING 'library' or 'require' calls not declared from: amap See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking if this is a source package ... OK * checking whether package 'ctc' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating ctc-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating ctc-manual.tex ... OK * checking ctc-manual.tex ... ERROR LaTeX errors when creating DVI version. This typically indicates Rd problems.

installing R.css in E:/biocbld/2.0d/Rpacks/ctc.Rcheck ---------- Making package ctc ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata installing R files installing demos installing exec files installing inst files installing man source files installing indices installing help >>> Building/Updating help pages for package 'ctc' Formats: text html latex example chm hc2Newick text html latex example chm hclust2treeview text html latex example chm r2cluster text html latex example chm r2gtr text html latex example chm r2xcluster text html latex example chm read.eisen text html latex chm xcluster text html latex example chm xcluster2r text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\2.0d\Rpacks\ctc.Rcheck\00_pkg_src\ctc\chm\ctc.chm Compile time: 0 minutes, 0 seconds 9 Topics 29 Local links 15 Internet links 1 Graphic Created e:\biocbld\2.0d\Rpacks\ctc.Rcheck\00_pkg_src\ctc\chm\ctc.chm, 30,294 bytes Compression decreased file by 8,891 bytes. adding MD5 sums * DONE (ctc)

Package 47/208	OS	Arch	BUILD	CHECK	BUILD BIN
ctc 1.9.0 Antoine Lucas	Linux (SUSE 9.2)	x86_64	OK	WARNINGS
	Linux (SUSE 10.1)	x86_64	OK	WARNINGS
	Linux (SUSE 9.2)	i686	OK	WARNINGS
	Solaris 2.9	sparc	OK	WARNINGS
	Windows Server 2003	x86_64	OK	WARNINGS	OK
	Windows Server 2003	NA	OK	[ ERROR ]	OK
	Mac OS X (10.4.6)	i686	OK	WARNINGS

ctc

1.9.0

Command output