Package: MCRestimate

Version: 1.9.1

Command: D:\biocbld\2.0d\R\bin\R.exe CMD check MCRestimate_1.9.1.tar.gz

RetCode: 0

Time: 164.6 seconds

Status: WARNINGS

CheckDir: MCRestimate.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory 'D:/biocbld/2.0d/Rpacks/MCRestimate.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'MCRestimate/DESCRIPTION' ... OK
* this is package 'MCRestimate' version '1.9.1'
* checking package dependencies ... WARNING
'library' or 'require' calls not declared from:
  genefilter ROC rfe gpls
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'MCRestimate' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating MCRestimate-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating MCRestimate-manual.tex ... OK
* checking MCRestimate-manual.tex ... OK

WARNING: There was 1 warning, see
  D:/biocbld/2.0d/Rpacks/MCRestimate.Rcheck/00check.log
for details

installing R.css in D:/biocbld/2.0d/Rpacks/MCRestimate.Rcheck


---------- Making package MCRestimate ------------
  adding build stamp to DESCRIPTION
  installing R files
  save image
Loading required package: e1071
Loading required package: class
Loading required package: pamr
Loading required package: randomForest
randomForest 4.5-16 
Type rfNews() to see new features/changes/bug fixes.
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: golubEsets
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'MCRestimate'
     Formats: text html latex example chm 
  ClassifierBuild                   text    html    latex   example chm
  MCRconfusion                      text    html    latex   example chm
  MCRestimate                       text    html    latex   example chm
  MCRestimateMerge                  text    html    latex   example chm
  PLR                               text    html    latex   example chm
  PLR.add.fkt                       text    html    latex   example chm
  SVM.OVA.wrap                      text    html    latex   example chm
  class.factor.format               text    html    latex   example chm
  gene.reduction.fkt                text    html    latex   example chm
  important.variable.names          text    html    latex   example chm
  intersectList                     text    html    latex   example chm
  plot.MCRestimate                  text    html    latex   example chm
  replace.NA                        text    html    latex   example chm
  select.NA.elements                text    html    latex   example chm
  whatiscorrect                     text    html    latex   example chm
  wrapper.fkt                       text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\2.0d\Rpacks\MCRestimate.Rcheck\00_pkg_src\MCRestimate\chm\MCRestimate.chm


Compile time: 0 minutes, 0 seconds
17	Topics
59	Local links
0	Internet links
1	Graphic


Created d:\biocbld\2.0d\Rpacks\MCRestimate.Rcheck\00_pkg_src\MCRestimate\chm\MCRestimate.chm, 36,576 bytes
Compression decreased file by 27,561 bytes.
  adding MD5 sums

* DONE (MCRestimate)