Back to the "Multiple platform build/check report"

Package 66/208OSArchBUILDCHECKBUILD BIN

genefilter

1.13.7

Biocore Team		Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 10.1) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc OK  OK 
Windows Server 2003 x86_64 OK  OK  OK 
Windows Server 2003 NA OK  ERROR  OK 
Mac OS X (10.4.6) i686[ OK ] OK 
Package: genefilter
Version: 1.13.7
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build genefilter
RetCode: 0
Time: 50.5 seconds
Status: OK
PackageFile: genefilter_1.13.7.tar.gz

Command output

* checking for file 'genefilter/DESCRIPTION' ... OK
* preparing 'genefilter':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'genefilter' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c genedist.c -o genedist.o
/var/tmp//ccIS7Nfw.s:1688:indirect jmp without `*'
/var/tmp//ccIS7Nfw.s:1703:indirect jmp without `*'
/var/tmp//ccIS7Nfw.s:1718:indirect jmp without `*'
/var/tmp//ccIS7Nfw.s:1733:indirect jmp without `*'
/var/tmp//ccIS7Nfw.s:1748:indirect jmp without `*'
/var/tmp//ccIS7Nfw.s:1767:indirect jmp without `*'
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -march=pentium-m -mtune=prescott -c half_range_mode.cpp -o half_range_mode.o
/var/tmp//cchqZG87.s:2284:indirect jmp without `*'
/var/tmp//cchqZG87.s:2299:indirect jmp without `*'
/var/tmp//cchqZG87.s:2314:indirect jmp without `*'
/var/tmp//cchqZG87.s:2329:indirect jmp without `*'
/var/tmp//cchqZG87.s:2344:indirect jmp without `*'
/var/tmp//cchqZG87.s:2359:indirect jmp without `*'
/var/tmp//cchqZG87.s:2374:indirect jmp without `*'
/var/tmp//cchqZG87.s:2389:indirect jmp without `*'
/var/tmp//cchqZG87.s:2404:indirect jmp without `*'
/var/tmp//cchqZG87.s:2419:indirect jmp without `*'
/var/tmp//cchqZG87.s:2434:indirect jmp without `*'
/var/tmp//cchqZG87.s:2453:indirect jmp without `*'
/var/tmp//cchqZG87.s:2468:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c init.c -o init.o
/var/tmp//ccFoGalw.s:61:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c pAUC.c -o pAUC.o
/var/tmp//ccs1LZRr.s:847:indirect jmp without `*'
/var/tmp//ccs1LZRr.s:862:indirect jmp without `*'
/var/tmp//ccs1LZRr.s:877:indirect jmp without `*'
/var/tmp//ccs1LZRr.s:892:indirect jmp without `*'
/var/tmp//ccs1LZRr.s:907:indirect jmp without `*'
/var/tmp//ccs1LZRr.s:926:indirect jmp without `*'
/var/tmp//ccs1LZRr.s:941:indirect jmp without `*'
/var/tmp//ccs1LZRr.s:956:indirect jmp without `*'
/var/tmp//ccs1LZRr.s:971:indirect jmp without `*'
/var/tmp//ccs1LZRr.s:986:indirect jmp without `*'
/var/tmp//ccs1LZRr.s:1001:indirect jmp without `*'
/var/tmp//ccs1LZRr.s:1016:indirect jmp without `*'
/var/tmp//ccs1LZRr.s:1031:indirect jmp without `*'
/var/tmp//ccs1LZRr.s:1046:indirect jmp without `*'
/var/tmp//ccs1LZRr.s:1061:indirect jmp without `*'
/var/tmp//ccs1LZRr.s:1080:indirect jmp without `*'
/var/tmp//ccs1LZRr.s:1095:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c rowPAUCs.c -o rowPAUCs.o
/var/tmp//ccgGQo40.s:1105:indirect jmp without `*'
/var/tmp//ccgGQo40.s:1120:indirect jmp without `*'
/var/tmp//ccgGQo40.s:1135:indirect jmp without `*'
/var/tmp//ccgGQo40.s:1150:indirect jmp without `*'
/var/tmp//ccgGQo40.s:1165:indirect jmp without `*'
/var/tmp//ccgGQo40.s:1180:indirect jmp without `*'
/var/tmp//ccgGQo40.s:1195:indirect jmp without `*'
/var/tmp//ccgGQo40.s:1210:indirect jmp without `*'
/var/tmp//ccgGQo40.s:1225:indirect jmp without `*'
/var/tmp//ccgGQo40.s:1240:indirect jmp without `*'
/var/tmp//ccgGQo40.s:1255:indirect jmp without `*'
/var/tmp//ccgGQo40.s:1270:indirect jmp without `*'
/var/tmp//ccgGQo40.s:1285:indirect jmp without `*'
/var/tmp//ccgGQo40.s:1300:indirect jmp without `*'
/var/tmp//ccgGQo40.s:1315:indirect jmp without `*'
/var/tmp//ccgGQo40.s:1330:indirect jmp without `*'
/var/tmp//ccgGQo40.s:1345:indirect jmp without `*'
/var/tmp//ccgGQo40.s:1367:indirect jmp without `*'
/var/tmp//ccgGQo40.s:1382:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c rowttests.c -o rowttests.o
/var/tmp//ccxdti04.s:851:indirect jmp without `*'
/var/tmp//ccxdti04.s:866:indirect jmp without `*'
/var/tmp//ccxdti04.s:881:indirect jmp without `*'
/var/tmp//ccxdti04.s:896:indirect jmp without `*'
/var/tmp//ccxdti04.s:911:indirect jmp without `*'
/var/tmp//ccxdti04.s:926:indirect jmp without `*'
/var/tmp//ccxdti04.s:945:indirect jmp without `*'
/var/tmp//ccxdti04.s:960:indirect jmp without `*'
/var/tmp//ccxdti04.s:979:indirect jmp without `*'
/var/tmp//ccxdti04.s:994:indirect jmp without `*'
/var/tmp//ccxdti04.s:1009:indirect jmp without `*'
/var/tmp//ccxdti04.s:1024:indirect jmp without `*'
/var/tmp//ccxdti04.s:1039:indirect jmp without `*'
/var/tmp//ccxdti04.s:1054:indirect jmp without `*'
/var/tmp//ccxdti04.s:1069:indirect jmp without `*'
/var/tmp//ccxdti04.s:1084:indirect jmp without `*'
/var/tmp//ccxdti04.s:1099:indirect jmp without `*'
/var/tmp//ccxdti04.s:1118:indirect jmp without `*'
/var/tmp//ccxdti04.s:1133:indirect jmp without `*'
gfortran-4.0 -arch i386   -fPIC  -g -O2 -march=pentium-m -mtune=prescott -c ttest.f -o ttest.o
/var/tmp//ccHm7Rvt.s:463:indirect jmp without `*'
g++-4.0 -arch i386 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o genefilter.so genedist.o half_range_mode.o init.o pAUC.o rowPAUCs.o rowttests.o ttest.o  -lgfortran -lgcc_s -lSystemStubs -lmx -lSystem -F/Library/Frameworks/R.framework/.. -framework R
** arch - ppc
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c genedist.c -o genedist.o
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c half_range_mode.cpp -o half_range_mode.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c init.c -o init.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c pAUC.c -o pAUC.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c rowPAUCs.c -o rowPAUCs.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c rowttests.c -o rowttests.o
gfortran-4.0 -arch ppc   -fPIC  -g -O2 -c ttest.f -o ttest.o
g++-4.0 -arch ppc -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o genefilter.so genedist.o half_range_mode.o init.o pAUC.o rowPAUCs.o rowttests.o ttest.o  -lgfortran -lgcc_s -lSystemStubs -lmx -lSystem -F/Library/Frameworks/R.framework/.. -framework R
** R
** data
**  moving datasets to lazyload DB
** inst
** save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: survival
Loading required package: splines
** help
 >>> Building/Updating help pages for package 'genefilter'
     Formats: text html latex example 
  Anova                             text    html    latex   example
  allNA                             text    html    latex   example
  coxfilter                         text    html    latex   example
  cv                                text    html    latex   example
  eSetFilter                        text    html    latex   example
  filterfun                         text    html    latex   example
  findLargest                       text    html    latex   example
  gapFilter                         text    html    latex   example
  genefilter                        text    html    latex   example
  genefinder                        text    html    latex   example
  genescale                         text    html    latex   example
  half.range.mode                   text    html    latex   example
  kOverA                            text    html    latex   example
  maxA                              text    html    latex   example
  pOverA                            text    html    latex   example
  rowFtests                         text    html    latex   example
  rowROC-class                      text    html    latex   example
  rowSds                            text    html    latex   example
  rowpAUCs                          text    html    latex   example
  shorth                            text    html    latex   example
  tdata                             text    html    latex   example
  ttest                             text    html    latex   example
** building package indices ...
* DONE (genefilter)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'genefilter_1.13.7.tar.gz'