0.3.00Nolwenn Le Meur | Linux (SUSE 9.2) | x86_64 | ERROR | skipped | |
| Linux (SUSE 10.1) | x86_64 | ERROR | skipped | |
| Linux (SUSE 9.2) | i686 | ERROR | skipped | |
| Solaris 2.9 | sparc | [ ERROR ] | skipped | |
| Windows Server 2003 | x86_64 | ERROR | skipped | skipped |
| Windows Server 2003 | NA | ERROR | skipped | skipped |
| Mac OS X (10.4.6) | i686 | ERROR | skipped | |
* checking for file 'flowCore/DESCRIPTION' ... OK
* preparing 'flowCore':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'flowCore' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -fPIC -g -O2 -Wall -c biexponential.c -o biexponential.o
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -fPIC -g -O2 -Wall -c inPolygon.c -o inPolygon.o
gcc -std=gnu99 -G -L/usr/local/lib -o flowCore.so biexponential.o inPolygon.o
** R
** data
chmod: getting attributes of `/tmp/Rinst1772671818/flowCore/data/*': No such file or directory
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: colorspace
Loading required package: rrcov
Scalable Robust Estimators with High Breakdown Point (version 0.3-04)
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
** help
>>> Building/Updating help pages for package 'flowCore'
Formats: text html latex example
filter-class text html latex
filter text html latex example
filterResult-class text html latex
flowFrame-class text html latex example
flowSet-class text html latex example
logicleTransform text html latex example
plot text html latex example
read.FCS text html latex example
rectangleGate text html latex example
transform text html latex example
transformation-class text html latex
** building package indices ...
* DONE (flowCore)
* creating vignettes ... ERROR
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: colorspace
Loading required package: rrcov
/loc/biocbuild/2.0d/R/bin/texi2dvi: pdflatex exited with bad status, quitting.
/loc/biocbuild/2.0d/R/bin/texi2dvi: see filtering-flowCore.log for errors.
Error in texi2dvi(file = bft, pdf = TRUE, clean = FALSE, quiet = quiet) :
running texi2dvi on 'filtering-flowCore.tex' failed
Execution halted