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pairseqsim

1.8.0

Witold Wolski
Last Changed Date: 2006-10-03 12:16:03 -0700
Last Changed Rev: 20373
lamb1 Linux (SUSE 10.1) x86_64 [ OK ] OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
churchill Solaris 2.9 sparc  OK  OK 
lemming Windows Server 2003 x86_64  OK  OK  OK 
Package: pairseqsim
Version: 1.8.0
Command: /home/biocbuild/bbs-1.9/R/bin/R CMD build pairseqsim
RetCode: 0
Time: 9.5 seconds
Status: OK
PackageFile: pairseqsim_1.8.0.tar.gz

Command output

* checking for file 'pairseqsim/DESCRIPTION' ... OK
* preparing 'pairseqsim':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'pairseqsim' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-1.9/R/include -I/home/biocbuild/bbs-1.9/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c align.c -o align.o
gcc -std=gnu99 -I/home/biocbuild/bbs-1.9/R/include -I/home/biocbuild/bbs-1.9/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c basic.c -o basic.o
gcc -std=gnu99 -I/home/biocbuild/bbs-1.9/R/include -I/home/biocbuild/bbs-1.9/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c callalign.c -o callalign.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o pairseqsim.so align.o basic.o callalign.o   
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'pairseqsim'
     Formats: text html latex example 
  AAAlignment-class                 text    html    latex   example
  AAAlphabet-class                  text    html    latex   example
  AASequence-class                  text    html    latex   example
  AASequence                        text    html    latex   example
  AASequenceList-class              text    html    latex   example
  EPAM110                           text    html    latex   example
  Submatrix-class                   text    html    latex
  listdist-methods                  text    html    latex
  readFasta-methods                 text    html    latex   example
  salign-methods                    text    html    latex   example
  sequlist                          text    html    latex   example
  testalign-methods                 text    html    latex
** building package indices ...
* DONE (pairseqsim)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'pairseqsim_1.8.0.tar.gz'