* checking for file 'GGtools/DESCRIPTION' ... OK
* preparing 'GGtools':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'GGtools' ...
** libs
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -fpic -g -O2 -Wall -c minfra.cc -o minfra.o
minfra.cc: In function `matrix operator/(matrix&, matrix&)':
minfra.cc:459: warning: unused variable `int a2c'
minfra.cc: In function `matrix delete_col(matrix, int)':
minfra.cc:545: warning: unused variable `int ncop'
minfra.cc:545: warning: unused variable `int nresel'
minfra.cc:545: warning: unused variable `int skip'
minfra.cc:546: warning: unused variable `double*resbase'
minfra.cc:546: warning: unused variable `double*Xbase'
minfra.cc: In function `int split(matrix&, matrix&, matrix*)':
minfra.cc:1210: warning: unused variable `int j'
minfra.cc: In function `matrix* split(matrix&, matrix&)':
minfra.cc:1245: warning: unused variable `int j'
g++ -shared -L/usr/local/lib64 -o GGtools.so minfra.o
** R
** data
** moving datasets to lazyload DB
** inst
** help
>>> Building/Updating help pages for package 'GGtools'
Formats: text html latex example
HM2rac text html latex example
HMworkflow text html latex example
geneLocs text html latex example
genoStrings text html latex example
make_racExSet text html latex example
plot_EvG text html latex example
racExSet-class text html latex example
snpMeta-class text html latex example
snpScreen text html latex example
snps text html latex example
** building package indices ...
* DONE (GGtools)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
file 'GGtools/src/minfra.cc' had CRLF line endings
* checking for empty or unneeded directories
* building 'GGtools_1.2.0.tar.gz'