Package: BSgenome

Version: 1.2.3

Command: /loc/biocbuild/1.9d/R/bin/R CMD check BSgenome_1.2.3.tar.gz

RetCode: 0

Time: 35.7 seconds

Status: OK

CheckDir: BSgenome.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.9d/Rpacks/BSgenome.Rcheck'
* using R version 2.4.0 (2006-10-03)
* checking for file 'BSgenome/DESCRIPTION' ... OK
* this is package 'BSgenome' version '1.2.3'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BSgenome' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating BSgenome-Ex.R ... OK
* checking examples ... OK
* creating BSgenome-manual.tex ... OK
* checking BSgenome-manual.tex ... OK

* Installing *source* package 'BSgenome' ...
** R
** save image
Loading required package: Biostrings
Creating a new generic function for "names" in "BSgenome"
** help
 >>> Building/Updating help pages for package 'BSgenome'
     Formats: text html latex example 
  BSgenome-class                    text    html    latex   example
  buildDataFiles                    text    html    latex   example
** building package indices ...
* DONE (BSgenome)