* checking for file 'graph/DESCRIPTION' ... OK
* preparing 'graph':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'graph' ...
** libs
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c graph.c -o graph.o
gcc -G -L/usr/local/lib -o graph.so graph.o
** R
** data
** inst
** save image
** help
>>> Building/Updating help pages for package 'graph'
Formats: text html latex example
DFS text html latex example
IMCA text html latex example
acc-methods text html latex example
addEdge text html latex example
addNode text html latex example
adj-methods text html latex example
apoptosisGraph text html latex example
attrData-class text html latex example
attrDataItem-methods text html latex
attrDefaults-methods text html latex
aveNumEdges text html latex example
biocRepos text html latex example
boundary text html latex example
buildRepDepGraph text html latex example
calcProb text html latex example
calcSumProb text html latex example
clearNode text html latex example
clusterGraph-class text html latex example
clusteringCoefficient-methods text html latex example
combineNodes text html latex example
distGraph-class text html latex example
duplicatedEdges text html latex example
edgeData-methods text html latex
edgeDataDefaults-methods text html latex
edgeMatrix text html latex example
edgeWeights text html latex example
fromGXL-methods text html latex example
graph-class text html latex example
graph2SparseM text html latex example
graphAM-class text html latex example
graphExamples text html latex example
graphNEL-class text html latex example
inEdges text html latex example
internal text html latex
isAdjacent-methods text html latex
isDirected-methods text html latex
listEdges text html latex example
matrix2Graph text html latex example
mostEdges text html latex example
nodeData-methods text html latex
nodeDataDefaults-methods text html latex
numNoEdges text html latex example
randomEGraph text html latex example
randomGraph text html latex example
randomNodeGraph text html latex example
removeEdge text html latex example
removeNode text html latex example
reverseEdgeDirections text html latex example
simpleEdge-class text html latex example
standardLabeling text html latex example
subGraph text html latex example
toDotR-methods text html latex example
ugraph text html latex example
validGraph text html latex example
write.tlp text html latex
** building package indices ...
* DONE (graph)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'graph_1.12.0.tar.gz'