Package: Category

Version: 1.5.9

Command: E:\hpages\1.9d\R\bin\R.exe CMD build Category

RetCode: 1

Time: 36.9 seconds

Status: ERROR

PackageFile: None

* checking for file 'Category/DESCRIPTION' ... OK
* preparing 'Category':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/hpages/1.9d/tmpdir/Rinst146835931


---------- Making package Category ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'Category'
     Formats: text html latex example chm 
  GOHyperG                          text    html    latex   example chm
  GeneCategoryHyperGeoTestParams-cl text    html    latex           chm
  GeneCategoryHyperGeoTestResult-cl text    html    latex           chm
  GeneCategoryHyperGeoTestResultBas text    html    latex           chm
  GeneGoHyperGeoTestParams-class    text    html    latex           chm
  GeneKeggHyperGeoTestParams-class  text    html    latex           chm
  MAPAmat                           text    html    latex   example chm
  applyByCategory                   text    html    latex   example chm
  cateGOryMatrix                    text    html    latex   example chm
  categoryToEntrezBuilder           text    html    latex           chm
  findAMstats                       text    html    latex   example chm
  geneCategoryHyperGeoTest          text    html    latex           chm
  geneGoHyperGeoTest                text    html    latex   example chm
  geneKeggHyperGeoTest              text    html    latex   example chm
  getPathNames                      text    html    latex   example chm
  makeEBcontr                       text    html    latex   example chm
  probes2MAP                        text    html    latex   example chm
  probes2Path                       text    html    latex   example chm
  ttperm                            text    html    latex   example chm
  universeBuilder                   text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\hpages\1.9d\Rpacks\Category\chm\Category.chm





Compile time: 0 minutes, 0 seconds

21	Topics

112	Local links

0	Internet links

1	Graphic





Created e:\hpages\1.9d\Rpacks\Category\chm\Category.chm, 44,521 bytes

Compression decreased file by 46,839 bytes.

  preparing package Category for lazy loading
Loading required package: Biobase

Loading required package: tools


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: KEGG

Loading required package: hgu95av2

Loading required package: genefilter

Loading required package: survival

Loading required package: splines

Loading required package: GO

Loading required package: graph

Loading required package: Ruuid

Loading required package: annotate

  adding MD5 sums

* DONE (Category)
* creating vignettes ... ERROR

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: survival

Loading required package: splines

Loading required package: GO

Loading required package: graph

Loading required package: Ruuid


Error:  chunk 2 (label=Example) 
Error in featureData(x) : no slot of name "featureData" for this object of class "ExpressionSet"
Error in buildVignettes(dir = ".") : Error:  chunk 2 (label=Example) 
Error in featureData(x) : no slot of name "featureData" for this object of class "ExpressionSet"
Execution halted