Back to the "Multiple platform build/check report"

Package 10/205OSArchBUILDCHECKBUILD BIN

affylmGUI

1.7.1

Keith Satterley		Linux (SUSE 9.2) x86_64 OK  WARNINGS 
Linux (SUSE 9.2) i686 OK  WARNINGS 
Solaris 2.9 sparc OK  OK 
Linux (SUSE 10.0) x86_64 OK  WARNINGS 
Windows Server 2003 x86_64 OK [ WARNINGS ] OK 
Windows XP i686 OK  ERROR  OK 
Mac OS X (10.4.6) i686 OK  WARNINGS 
Package: affylmGUI
Version: 1.7.1
Command: D:\biocbld\1.9d\R\bin\R.exe CMD check affylmGUI_1.7.1.tar.gz
RetCode: 0
Time: 65.7 seconds
Status: WARNINGS
CheckDir: affylmGUI.Rcheck
Warnings: 1

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.9d/Rpacks/affylmGUI.Rcheck'
* using R version 2.4.0 alpha (2006-09-10 r39242)
* checking for file 'affylmGUI/DESCRIPTION' ... OK
* this is package 'affylmGUI' version '1.7.1'
* checking package dependencies ... WARNING
'::' or ':::' imports not declared from:
  Biobase
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'affylmGUI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating affylmGUI-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating affylmGUI-manual.tex ... OK
* checking affylmGUI-manual.tex ... OK

WARNING: There was 1 warning, see
  D:/biocbld/1.9d/Rpacks/affylmGUI.Rcheck/00check.log
for details

affylmGUI.Rcheck/00install.out:

installing R.css in D:/biocbld/1.9d/Rpacks/affylmGUI.Rcheck


---------- Making package affylmGUI ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'affylmGUI'
     Formats: text html latex example chm 
  ALGchangeLog                      text    html    latex           chm
  affylmGUI                         text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.9d\Rpacks\affylmGUI.Rcheck\00_pkg_src\affylmGUI\chm\affylmGUI.chm


Compile time: 0 minutes, 0 seconds
3	Topics
109	Local links
0	Internet links
1	Graphic


Created d:\biocbld\1.9d\Rpacks\affylmGUI.Rcheck\00_pkg_src\affylmGUI\chm\affylmGUI.chm, 23,008 bytes
Compression decreased file by 24,552 bytes.
  preparing package affylmGUI for lazy loading
Loading required package: limma

Loading required package: tcltk

Loading required package: affy

Loading required package: Biobase

Loading required package: tools


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affyio

  adding MD5 sums

* DONE (affylmGUI)