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affyQCReport

1.11.1

Craig Parman		Linux (SUSE 9.2) x86_64 ERROR skipped
Linux (SUSE 9.2) i686 ERROR skipped
Solaris 2.9 sparc OK  OK 
Linux (SUSE 10.0) x86_64 ERROR skipped
Windows Server 2003 x86_64[ ERROR ]skippedskipped
Windows XP i686 ERROR skippedskipped
Mac OS X (10.4.6) i686 ERROR skipped
Package: affyQCReport
Version: 1.11.1
Command: D:\biocbld\1.9d\R\bin\R.exe CMD build affyQCReport
RetCode: 1
Time: 38.5 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'affyQCReport/DESCRIPTION' ... OK
* preparing 'affyQCReport':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/1.9d/tmpdir/Rinst461630468


---------- Making package affyQCReport ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'affyQCReport'
     Formats: text html latex example chm 
  QCReport                          text    html    latex   example
  borderQC1                         text    html    latex   example
  borderQC2                         text    html    latex   example
  correlationPlot                   text    html    latex   example
  signalDist                        text    html    latex   example
  titlePage                         text    html    latex   example
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\1.9d\Rpacks\affyQCReport\chm\affyQCReport.chm





Compile time: 0 minutes, 0 seconds

7	Topics

15	Local links

0	Internet links

1	Graphic





Created d:\biocbld\1.9d\Rpacks\affyQCReport\chm\affyQCReport.chm, 19,119 bytes

Compression decreased file by 3,320 bytes.

  adding MD5 sums

* DONE (affyQCReport)
* creating vignettes ... ERROR
Loading required package: Biobase


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affy

Loading required package: affyio

Loading required package: simpleaffy

Loading required package: genefilter

Loading required package: survival

Loading required package: splines


Error:  chunk 7 
Error in function (classes, fdef, mtable)  : 
	unable to find an inherited method for function "pData", for signature "phenoData"
Error in buildVignettes(dir = ".") : Error:  chunk 7 
Error in function (classes, fdef, mtable)  : 
	unable to find an inherited method for function "pData", for signature "phenoData"
Execution halted