Package: y2hStat

Version: 1.3.12

Command: /loc/biocbuild/1.9d/R/bin/R CMD check y2hStat_1.3.12.tar.gz

RetCode: 0

Time: 1033.2 seconds

Status: WARNINGS

CheckDir: y2hStat.Rcheck

Warnings: 2

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.9d/Rpacks/y2hStat.Rcheck'
* using R version 2.4.0 alpha (2006-09-10 r39242)
* checking for file 'y2hStat/DESCRIPTION' ... OK
* this is package 'y2hStat' version '1.3.12'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'y2hStat' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  makeBinVect twowayPERM
Undocumented data sets:
  twTableAPMS twTableY2H
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'genBPGraph'
  baitAsPrey

Functions with \usage entries need to have the appropriate \alias entries,
and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* creating y2hStat-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating y2hStat-manual.tex ... OK
* checking y2hStat-manual.tex ... OK

WARNING: There were 2 warnings, see
  /loc/biocbuild/1.9d/Rpacks/y2hStat.Rcheck/00check.log
for details

* Installing *source* package 'y2hStat' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: GO

Loading required package: GOstats

Loading required package: graph

Loading required package: Ruuid

Loading required package: annotate

Loading required package: Biobase

Loading required package: tools


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: RBGL

Loading required package: genefilter

Loading required package: survival

Loading required package: splines

Loading required package: multtest

Loading required package: Category

Loading required package: KEGG

Loading required package: hgu95av2

Loading required package: YEAST

Loading required package: Rgraphviz

Loading required package: geneplotter

KernSmooth 2.22 installed
Copyright M. P. Wand 1997
** help
 >>> Building/Updating help pages for package 'y2hStat'
     Formats: text html latex example 
  baitsOnly                         text    html    latex   example
  bpGraphs                          text    html    latex   example
  bpMatrix                          text    html    latex   example
  collectBPStats                    text    html    latex   example
  collectIntactData                 text    html    latex   example
  collectMembranePPI                text    html    latex
  createBPList                      text    html    latex   example
  createTables                      text    html    latex   example
  degreeStats                       text    html    latex   example
  estErrProbMethodOfMoments         text    html    latex   example
  expOverlap                        text    html    latex   example
  findComplexBP                     text    html    latex   example
  genBPGraph                        text    html    latex   example
  inNucleus                         text    html    latex   example
  intAct2Sys                        text    html    latex   example
  intActData                        text    html    latex   example
  map2Systematic                    text    html    latex   example
  map2Systematic2                   text    html    latex
  membranePPI                       text    html    latex   example
  nucStat                           text    html    latex   example
  nullDistDoublyTestedEdges         text    html    latex   example
  ppipred                           text    html    latex   example
  recipBP                           text    html    latex   example
  sWAC2Sys                          text    html    latex   example
  symInteraction                    text    html    latex   example
  tableList                         text    html    latex   example
  y2h                               text    html    latex   example
  y2hSysGW                          text    html    latex   example
** building package indices ...
* DONE (y2hStat)