Back to the "Multiple platform build/check report"
| Package 82/205 | OS | Arch | BUILD | CHECK | BUILD BIN |
graph1.11.14Seth Falcon | Linux (SUSE 9.2) | x86_64 | OK | [ WARNINGS ] | |
| Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
| Solaris 2.9 | sparc | OK | OK | ||
| Linux (SUSE 10.0) | x86_64 | OK | WARNINGS | ||
| Windows Server 2003 | x86_64 | OK | WARNINGS | OK | |
| Windows XP | i686 | OK | WARNINGS | skipped | |
| Mac OS X (10.4.6) | i686 | OK | WARNINGS |
| Package: graph |
| Version: 1.11.14 |
| Command: /loc/biocbuild/1.9d/R/bin/R CMD check graph_1.11.14.tar.gz |
| RetCode: 0 |
| Time: 101.7 seconds |
| Status: WARNINGS |
| CheckDir: graph.Rcheck |
| Warnings: 2 |
* checking for working latex ... OK * using log directory '/loc/biocbuild/1.9d/Rpacks/graph.Rcheck' * using R version 2.4.0 alpha (2006-09-10 r39242) * checking for file 'graph/DESCRIPTION' ... OK * this is package 'graph' version '1.11.14' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'graph' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... WARNING Error in .asEnvironmentPackage(where) : Package 'methods' is not loaded Error: unable to load R code in package 'Ruuid' Execution halted A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented S4 methods: generic 'edgeDataDefaults<-' and siglist 'graph,character,ANY' generic 'edgeWeights' and siglist 'distGraph,ANY' generic 'edgeWeights' and siglist 'clusterGraph,ANY' generic 'nodeDataDefaults<-' and siglist 'graph,character,ANY' All user-level objects in a package (including S4 classes and methods) should have documentation entries. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable use of $BLAS_LIBS ... OK * creating graph-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating graph-manual.tex ... OK * checking graph-manual.tex ... OK WARNING: There were 2 warnings, see /loc/biocbuild/1.9d/Rpacks/graph.Rcheck/00check.log for details
graph.Rcheck/00install.out:
* Installing *source* package 'graph' ...
** libs
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -fpic -g -O2 -std=gnu99 -Wall -c graph.c -o graph.o
gcc -shared -L/usr/local/lib64 -o graph.so graph.o
** R
** data
** inst
** save image
Loading required package: Ruuid
** help
>>> Building/Updating help pages for package 'graph'
Formats: text html latex example
DFS text html latex example
IMCA text html latex example
acc-methods text html latex example
addEdge text html latex example
addNode text html latex example
adj-methods text html latex example
apoptosisGraph text html latex example
asGraphProperty text html latex example
attrData-class text html latex example
attrDataItem-methods text html latex
attrDefaults-methods text html latex
aveNumEdges text html latex example
biocRepos text html latex example
boundary text html latex example
buildRepDepGraph text html latex example
calcProb text html latex example
calcSumProb text html latex example
clearNode text html latex example
clusterGraph-class text html latex example
clusteringCoefficient-methods text html latex example
combineNodes text html latex example
distGraph-class text html latex example
duplicatedEdges text html latex example
edgeData-methods text html latex
edgeDataDefaults-methods text html latex
edgeMatrix text html latex example
edgeWeights text html latex example
fromGXL-methods text html latex example
gEdge-class text html latex example
gNode-class text html latex example
generalGraph-class text html latex example
graph-class text html latex example
graph2SparseM text html latex example
graphAM-class text html latex example
graphExamples text html latex example
graphH-class text html latex example
graphID-class text html latex
graphNEL-class text html latex example
hashtable-class text html latex example
hashtable text html latex example
inEdges text html latex example
internal text html latex
isAdjacent-methods text html latex
isDirected-methods text html latex
listEdges text html latex example
matrix2Graph text html latex example
mostEdges text html latex example
nodeData-methods text html latex
nodeDataDefaults-methods text html latex
numNoEdges text html latex example
propertyHolder-class text html latex example
randomEGraph text html latex example
randomGraph text html latex example
randomNodeGraph text html latex example
removeEdge text html latex example
removeNode text html latex example
simpleEdge-class text html latex example
standardLabeling text html latex example
subGraph text html latex example
toDotR-methods text html latex example
ugraph text html latex example
validGraph text html latex example
write.tlp text html latex
** building package indices ...
* DONE (graph)