Package: TypeInfo

Version: 0.3.1

Command: /loc/biocbuild/1.9d/R/bin/R CMD check TypeInfo_0.3.1.tar.gz

RetCode: 0

Time: 43.8 seconds

Status: WARNINGS

CheckDir: TypeInfo.Rcheck

Warnings: 3

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.9d/Rpacks/TypeInfo.Rcheck'
* using R version 2.4.0 alpha (2006-09-10 r39242)
* checking for file 'TypeInfo/DESCRIPTION' ... OK
* this is package 'TypeInfo' version '0.3.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'TypeInfo' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... WARNING
  typeInfo<-
In R, the argument of a replacement function which corresponds to the right
hand side must be named 'value'.
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 classes:
  DynamicTypeTest
Undocumented S4 methods:
  generic 'initialize' and siglist 'TypeSpecification'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'checkArgs'
  isMissing

Undocumented arguments in documentation object 'showTypeInfo'
  prefix

Functions with \usage entries need to have the appropriate \alias entries,
and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* creating TypeInfo-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/loc/biocbuild/1.9d/Rpacks/TypeInfo.Rcheck/tests'
  Running 'copyEnv.R'
  Running 'copySubstitute.R'
make[1]: Leaving directory `/loc/biocbuild/1.9d/Rpacks/TypeInfo.Rcheck/tests'
 OK
* checking package vignettes in 'inst/doc' ... OK
* creating TypeInfo-manual.tex ... OK
* checking TypeInfo-manual.tex ... OK

WARNING: There were 3 warnings, see
  /loc/biocbuild/1.9d/Rpacks/TypeInfo.Rcheck/00check.log
for details

* Installing *source* package 'TypeInfo' ...
** R
** inst
** save image
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'TypeInfo'
     Formats: text html latex example 
  ClassNameOrExpression-class       text    html    latex   example
  IndependentTypeSpecification-clas text    html    latex   example
  IndependentTypeSpecification      text    html    latex   example
  NamedTypeTest-class               text    html    latex   example
  ReturnTypeSpecification           text    html    latex   example
  SimultaneousTypeSpecification     text    html    latex   example
  TypedSignature-class              text    html    latex   example
  TypedSignature                    text    html    latex   example
  checkArgs                         text    html    latex   example
  checkReturnValue                  text    html    latex   example
  hasParameterType                  text    html    latex   example
  paramNames                        text    html    latex   example
  rewriteTypeCheck                  text    html    latex   example
  showTypeInfo                      text    html    latex   example
  typeInfo                          text    html    latex   example
** building package indices ...
* DONE (TypeInfo)