Back to the "Multiple platform build/check report"
| Package 126/205 | OS | Arch | BUILD | CHECK | BUILD BIN |
multtest1.11.2Katherine S. Pollard | Linux (SUSE 9.2) | x86_64 | OK | WARNINGS | |
| Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
| Solaris 2.9 | sparc | OK | WARNINGS | ||
| Linux (SUSE 10.0) | x86_64 | OK | WARNINGS | ||
| Windows Server 2003 | x86_64 | OK | WARNINGS | OK | |
| Windows XP | i686 | OK | WARNINGS | skipped | |
| Mac OS X (10.4.6) | i686 | OK | [ WARNINGS ] |
| Package: multtest |
| Version: 1.11.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check multtest_1.11.2.tar.gz |
| RetCode: 0 |
| Time: 87.7 seconds |
| Status: WARNINGS |
| CheckDir: multtest.Rcheck |
| Warnings: 1 |
* checking for working latex ... OK * using log directory '/Users/biocbuild/1.9d/Rpacks/multtest.Rcheck' * using R version 2.4.0 alpha (2006-09-07 r39185) * checking for file 'multtest/DESCRIPTION' ... OK * this is package 'multtest' version '1.11.2' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'multtest' can be installed ... WARNING Found the following significant warnings: Warning: file 'golub.RData' has magic number 'RDA1' * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $BLAS_LIBS ... OK * creating multtest-Ex.R ... OK * checking examples ... OK * creating multtest-manual.tex ... OK * checking multtest-manual.tex ... OK WARNING: There was 1 warning, see /Users/biocbuild/1.9d/Rpacks/multtest.Rcheck/00check.log for details
multtest.Rcheck/00install.out:
* Installing *source* package 'multtest' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c Rpack.c -o Rpack.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c block_sampling_fixed.c -o block_sampling_fixed.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c bootloop.c -o bootloop.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c mt.c -o mt.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c pairt_sampling.c -o pairt_sampling.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c random.c -o random.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c sampling.c -o sampling.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c sampling_fixed.c -o sampling_fixed.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c stat_func.c -o stat_func.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c stat_order.c -o stat_order.o
gcc-4.0 -arch i386 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o multtest.so Rpack.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -L/Library/Frameworks/R.framework/Resources/lib/i386 -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Resources/lib/i386/libRblas.dylib
** arch - ppc
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -c Rpack.c -o Rpack.o
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -c block_sampling_fixed.c -o block_sampling_fixed.o
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -c bootloop.c -o bootloop.o
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -c mt.c -o mt.o
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -c pairt_sampling.c -o pairt_sampling.o
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -c random.c -o random.o
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -c sampling.c -o sampling.o
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -c sampling_fixed.c -o sampling_fixed.o
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -c stat_func.c -o stat_func.o
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -DUSEDOUBLE -fPIC -g -O2 -std=gnu99 -c stat_order.c -o stat_order.o
gcc-4.0 -arch ppc -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o multtest.so Rpack.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -L/Library/Frameworks/R.framework/Resources/lib/ppc -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Resources/lib/ppc/libRblas.dylib
** R
** data
** inst
** save image
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: survival
Loading required package: splines
[1] "MTP"
Creating a new generic function for 'plot' in 'multtest'
[1] "plot"
Creating a new generic function for 'summary' in 'multtest'
[1] "summary"
[1] "["
Creating a new generic function for 'as.list' in 'multtest'
[1] "as.list"
Creating a new generic function for 'update' in 'multtest'
[1] "update"
** help
>>> Building/Updating help pages for package 'multtest'
Formats: text html latex example
MTP-class text html latex example
MTP-methods text html latex
MTP text html latex example
boot.resample text html latex example
fwer2gfwer text html latex example
get.index text html latex example
golub text html latex
meanX text html latex example
mt.internal text html latex
mt.maxT text html latex example
mt.plot text html latex example
mt.rawp2adjp text html latex example
mt.reject text html latex example
mt.sample.teststat text html latex example
mt.teststat text html latex example
ss.maxT text html latex example
wapply text html latex example
** building package indices ...
Warning: file 'golub.RData' has magic number 'RDA1'
Use of save versions prior to 2 is deprecated
* DONE (multtest)