Package: makePlatformDesign

Version: 0.99.16

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check makePlatformDesign_0.99.16.tar.gz

RetCode: 0

Time: 27.9 seconds

Status: WARNINGS

CheckDir: makePlatformDesign.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/Users/biocbuild/1.9d/Rpacks/makePlatformDesign.Rcheck'
* using R version 2.4.0 alpha (2006-09-07 r39185)
* checking for file 'makePlatformDesign/DESCRIPTION' ... OK
* this is package 'makePlatformDesign' version '0.99.16'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'makePlatformDesign' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'makePDpackage':
makePDpackage
  Code: function(designFile, file1 = NULL, file2 = NULL, manufacturer =
                 c("affymetrix", "nimblegen"), type = c("expression",
                 "SNP", "tiling"), extra = NULL, genomebuild = "hg12")
  Docs: function(designFile, file1 = NULL, file2 = NULL, manufacturer =
                 c("affymetrix", "nimblegen"), type = c("expression",
                 "SNP", "tiling"), extra = NULL)
  Argument names in code not in docs:
    genomebuild

* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating makePlatformDesign-Ex.R ... OK
* checking examples ... OK
* creating makePlatformDesign-manual.tex ... OK
* checking makePlatformDesign-manual.tex ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/1.9d/Rpacks/makePlatformDesign.Rcheck/00check.log
for details

* Installing *source* package 'makePlatformDesign' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c main.c -o main.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c strutils.c -o strutils.o
gcc-4.0 -arch i386 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o makePlatformDesign.so main.o strutils.o   -L/Library/Frameworks/R.framework/Resources/lib/i386 -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Resources/lib/i386/libRblas.dylib
** arch - ppc
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -std=gnu99 -c main.c -o main.o
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -std=gnu99 -c strutils.c -o strutils.o
gcc-4.0 -arch ppc -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o makePlatformDesign.so main.o strutils.o   -L/Library/Frameworks/R.framework/Resources/lib/ppc -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Resources/lib/ppc/libRblas.dylib
** R
** inst
** preparing package for lazy loading
Loading required package: affyio
** help
 >>> Building/Updating help pages for package 'makePlatformDesign'
     Formats: text html latex example 
  makePDpackage                     text    html    latex   example
  makePlatformDesign-internal       text    html    latex
** building package indices ...
* DONE (makePlatformDesign)