Back to the "Multiple platform build/check report"
| Package 116/187 | OS | Arch | BUILD | CHECK | BUILD BIN |
mscalib1.3.0Witold Wolski | Linux (SUSE 9.2) | x86_64 | OK | ERROR | |
| Linux (SUSE 9.2) | i686 | OK | ERROR | ||
| Solaris 2.9 | sparc | OK | ERROR | ||
| Linux (SUSE 10.0) | x86_64 | OK | ERROR | ||
| Windows Server 2003 | x86_64 | OK | [ ERROR ] | OK |
| Package: mscalib |
| Version: 1.3.0 |
| Command: D:\biocbld\1.9d\R\bin\R.exe CMD check mscalib_1.3.0.tar.gz |
| RetCode: 1 |
| Time: 96.8 seconds |
| Status: ERROR |
| CheckDir: mscalib.Rcheck |
| Warnings: NA |
* checking for working latex ... OK
* using log directory 'D:/biocbld/1.9d/Rpacks/mscalib.Rcheck'
* using R version 2.4.0 Under development (unstable) (2006-06-04 r38279)
* checking for file 'mscalib/DESCRIPTION' ... OK
* this is package 'mscalib' version '1.3.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'mscalib' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
pepruleFilterX
Undocumented S4 methods:
generic pepruleFilterX and siglist Massvector
generic pepruleFilterX and siglist Massvectorlist
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating mscalib-Ex.R ... OK
* checking examples ... ERROR
Running examples in mscalib-Ex.R failed.
The error most likely occurred in:
> ### * Cpf
>
> flush(stderr()); flush(stdout())
>
> ### Name: Cpf
> ### Title: Number of cleavages per protein
> ### Aliases: Cpf
> ### Keywords: misc
>
> ### ** Examples
>
> Cpf(avgProtlength = 350, cleavagesites = c("K", "R"), AAfrequencies = get(data("frlist",
+ package = "mscalib"))[[1]])
Warning in data("frlist", package = "mscalib") :
data set 'frlist' not found
Error in get(x, envir, mode, inherits) : variable "frlist" was not found
Execution halted
mscalib.Rcheck/00install.out:
installing R.css in D:/biocbld/1.9d/Rpacks/mscalib.Rcheck
---------- Making package mscalib ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'mscalib'
Formats: text html latex example chm
CSKrig-class text html latex example chm
CSTps-methods text html latex example chm
CSsurf-class text html latex example chm
CSsurf.gls-methods text html latex example chm
CSsurf.ls-methods text html latex chm
CalibPRstat-class text html latex example chm
Calibextstat-class text html latex example chm
Calibintlist-class text html latex example chm
Calibintstat-class text html latex example chm
Caliblist-class text html latex example chm
Calibprelist-class text html latex example chm
Calibprestat-class text html latex example chm
Calibstat-class text html latex example chm
Cpf text html latex example chm
DATA text html latex example chm
DATA2 text html latex example chm
DgetPRcalib text html latex chm
Fcn text html latex example chm
Fmn text html latex example chm
Surf-class text html latex example chm
averageAAmass text html latex example chm
c0lambdaDBn text html latex example chm
c0lambdaDBnC text html latex example chm
correctinternal-methods text html latex example chm
diffFilter-methods text html latex example chm
distance3 text html latex example chm
distance4 text html latex example chm
frlist text html latex example chm
getLpepcalib-methods text html latex example chm
getPPGmasses text html latex example chm
getPRcalib-methods text html latex chm
getdiff-methods text html latex example chm
getextcalib-methods text html latex chm
getglobalcalib-methods text html latex chm
getintcalib-methods text html latex example chm
getmstCalib-methods text html latex example chm
getpepcalib-methods text html latex example chm
getprecalib-methods text html latex chm
globalcalib-methods text html latex chm
lambda.cleavagesite text html latex example chm
lambda.none text html latex example chm
massFilter-methods text html latex chm
monoiso text html latex example chm
mstCalib-class text html latex example chm
nomina text html latex example chm
pepFilter-methods text html latex chm
peproleFilter-methods text html latex chm
peprule text html latex example chm
pepruleFilter text html latex chm
peprulecomp text html latex example chm
prAA text html latex example chm
residuals-methods text html latex chm
restrictionenz text html latex example chm
undocument-internal text html latex chm
wsFilter-methods text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\1.9d\Rpacks\mscalib.Rcheck\00_pkg_src\mscalib\chm\mscalib.chm
Compile time: 0 minutes, 0 seconds
56 Topics
283 Local links
11 Internet links
1 Graphic
Created d:\biocbld\1.9d\Rpacks\mscalib.Rcheck\00_pkg_src\mscalib\chm\mscalib.chm, 56,515 bytes
Compression decreased file by 133,982 bytes.
adding MD5 sums
* DONE (mscalib)