Package: msbase

Version: 1.5.0

Command: D:\biocbld\1.9d\R\bin\R.exe CMD check msbase_1.5.0.tar.gz

RetCode: 0

Time: 87.9 seconds

Status: OK

CheckDir: msbase.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.9d/Rpacks/msbase.Rcheck'
* using R version 2.4.0 Under development (unstable) (2006-06-04 r38279)
* checking for file 'msbase/DESCRIPTION' ... OK
* this is package 'msbase' version '1.5.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'msbase' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable compilation flags in Makevars ... OK
* creating msbase-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating msbase-manual.tex ... OK
* checking msbase-manual.tex ... OK

installing R.css in D:/biocbld/1.9d/Rpacks/msbase.Rcheck


---------- Making package msbase ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making llogic.d from llogic.c
making mscalibD.d from mscalibD.c
gcc   -Id:/biocbld/1.9d/R/include -Wall -O2 -ansi -g -O2  -c llogic.c -o llogic.o
gcc   -Id:/biocbld/1.9d/R/include -Wall -O2 -ansi -g -O2  -c mscalibD.c -o mscalibD.o
mscalibD.c: In function `getaccDIFUS':
mscalibD.c:521: warning: dereferencing type-punned pointer will break strict-aliasing rules
windres --include-dir d:/biocbld/1.9d/R/include  -i msbase_res.rc -o msbase_res.o
gcc  -shared -s  -o msbase.dll msbase.def llogic.o mscalibD.o msbase_res.o  -Ld:/biocbld/1.9d/R/bin   -lR
Info: resolving _R_NaN by linking to __imp__R_NaN (auto-import)
Info: resolving _R_NaReal by linking to __imp__R_NaReal (auto-import)
Info: resolving _R_DimSymbol by linking to __imp__R_DimSymbol (auto-import)
Info: resolving _R_NilValue by linking to __imp__R_NilValue (auto-import)
Info: resolving _R_NamesSymbol by linking to __imp__R_NamesSymbol (auto-import)
Info: resolving _R_PosInf by linking to __imp__R_PosInf (auto-import)
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package msbase for lazy data loading
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'msbase'
     Formats: text html latex example chm 
  List                              text    html    latex   example chm
  Massvector-class                  text    html    latex   example chm
  Massvectorlist-class              text    html    latex   example chm
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  gamasses-methods                  text    html    latex   example chm
  listdist-methods                  text    html    latex           chm
  nrmatch-methods                   text    html    latex   example chm
  numeric-class                     text    html    latex   example chm
  pldata                            text    html    latex   example chm
  undocument-internal               text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.9d\Rpacks\msbase.Rcheck\00_pkg_src\msbase\chm\msbase.chm


Compile time: 0 minutes, 0 seconds
25	Topics
181	Local links
0	Internet links
1	Graphic


Created d:\biocbld\1.9d\Rpacks\msbase.Rcheck\00_pkg_src\msbase\chm\msbase.chm, 40,767 bytes
Compression decreased file by 81,372 bytes.
  preparing package msbase for lazy loading
Creating a new generic function for 'subset' in 'msbase'
Creating a new generic function for 'image' in 'msbase'
Creating a new generic function for 'summary' in 'msbase'
Creating a new generic function for 'plot' in 'msbase'
Creating a new generic function for 'points' in 'msbase'
Creating a new generic function for 'unlist' in 'msbase'
Creating a new generic function for 'hist' in 'msbase'
  adding MD5 sums

* DONE (msbase)