Back to the "Multiple platform build/check report"
| Package 3/187 | OS | Arch | BUILD | CHECK | BUILD BIN |
affxparser1.5.2James Bullard | Linux (SUSE 9.2) | x86_64 | OK | WARNINGS | |
| Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
| Solaris 2.9 | sparc | OK | WARNINGS | ||
| Linux (SUSE 10.0) | x86_64 | OK | WARNINGS | ||
| Windows Server 2003 | x86_64 | OK | [ WARNINGS ] | OK |
| Package: affxparser |
| Version: 1.5.2 |
| Command: D:\biocbld\1.9d\R\bin\R.exe CMD check affxparser_1.5.2.tar.gz |
| RetCode: 0 |
| Time: 147.4 seconds |
| Status: WARNINGS |
| CheckDir: affxparser.Rcheck |
| Warnings: 1 |
* checking for working latex ... OK * using log directory 'D:/biocbld/1.9d/Rpacks/affxparser.Rcheck' * using R version 2.4.0 Under development (unstable) (2006-06-04 r38279) * checking for file 'affxparser/DESCRIPTION' ... OK * this is package 'affxparser' version '1.5.2' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'affxparser' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking Rd files ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: readBpmap readBpmapHeader readBpmapSeqInfo tpmap2bpmap writeTpmap All user-level objects in a package should have documentation entries. See chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable compilation flags in Makevars ... OK * creating affxparser-Ex.R ... OK * checking examples ... OK * creating affxparser-manual.tex ... OK * checking affxparser-manual.tex ... OK WARNING: There was 1 warning, see D:/biocbld/1.9d/Rpacks/affxparser.Rcheck/00check.log for details
affxparser.Rcheck/00install.out:
installing R.css in D:/biocbld/1.9d/Rpacks/affxparser.Rcheck
---------- Making package affxparser ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making R_affx_bpmap_parser.d from R_affx_bpmap_parser.cpp
making R_affx_cdf_extras.d from R_affx_cdf_extras.cpp
making R_affx_cdf_parser.d from R_affx_cdf_parser.cpp
making R_affx_cel_parser.d from R_affx_cel_parser.cpp
making R_affx_test_bpmap_cmdline.d from R_affx_test_bpmap_cmdline.cpp
making R_affx_test_cmd_line.d from R_affx_test_cmd_line.cpp
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/BitFlag.cpp -o fusion_sdk/calvin_files/data/src/BitFlag.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CDFData.cpp -o fusion_sdk/calvin_files/data/src/CDFData.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:26,
from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:26,
from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/CELData.cpp -o fusion_sdk/calvin_files/data/src/CELData.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/CELData.h:27,
from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/CELData.cpp: In member function `bool affymetrix_calvin_io::CelFileData::GetIntensities(int32_t, int32_t, FloatVector&)':
fusion_sdk/calvin_files/data/src/CELData.cpp:427: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/data/src/CELData.cpp:431: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/data/src/CELData.cpp: In member function `bool affymetrix_calvin_io::CelFileData::GetStdev(int32_t, int32_t, FloatVector&)':
fusion_sdk/calvin_files/data/src/CELData.cpp:445: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/data/src/CELData.cpp: In member function `bool affymetrix_calvin_io::CelFileData::GetNumPixels(int32_t, int32_t, Int16Vector&)':
fusion_sdk/calvin_files/data/src/CELData.cpp:459: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/data/src/BitFlag.h: At global scope:
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/DataGroup.cpp -o fusion_sdk/calvin_files/data/src/DataGroup.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/DataGroup.h: In constructor `affymetrix_calvin_io::DataGroup::DataGroup(const std::string&, const affymetrix_calvin_io::DataGroupHeader&, void*, bool)':
fusion_sdk/calvin_files/data/src/DataGroup.h:101: warning: `affymetrix_calvin_io::DataGroup::fileStream' will be initialized after
fusion_sdk/calvin_files/data/src/DataGroup.h:97: warning: `bool affymetrix_calvin_io::DataGroup::useMemoryMapping'
fusion_sdk/calvin_files/data/src/DataGroup.cpp:35: warning: when initialized here
fusion_sdk/calvin_files/data/src/DataGroup.h: In constructor `affymetrix_calvin_io::DataGroup::DataGroup(const std::string&, const affymetrix_calvin_io::DataGroupHeader&, std::ifstream&, bool)':
fusion_sdk/calvin_files/data/src/DataGroup.h:101: warning: `affymetrix_calvin_io::DataGroup::fileStream' will be initialized after
fusion_sdk/calvin_files/data/src/DataGroup.h:97: warning: `bool affymetrix_calvin_io::DataGroup::useMemoryMapping'
fusion_sdk/calvin_files/data/src/DataGroup.cpp:43: warning: when initialized here
fusion_sdk/calvin_files/data/src/BitFlag.h: At global scope:
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp -o fusion_sdk/calvin_files/data/src/DataGroupHeader.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/DataSet.cpp -o fusion_sdk/calvin_files/data/src/DataSet.o
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:26,
from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/DataSetHeader.cpp -o fusion_sdk/calvin_files/data/src/DataSetHeader.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/FileHeader.cpp -o fusion_sdk/calvin_files/data/src/FileHeader.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/GenericData.cpp -o fusion_sdk/calvin_files/data/src/GenericData.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp -o fusion_sdk/calvin_files/data/src/GenericDataHeader.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/exception/src/ExceptionBase.cpp -o fusion_sdk/calvin_files/exception/src/ExceptionBase.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.cpp:21:
fusion_sdk/file/BPMAPFileData.h:29: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/file/CDFFileData.h:30: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:23:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp: In member function `char affymetrix_fusion_io::FusionCDFProbeInformation::GetPBase() const':
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:420: warning: converting to non-pointer type `char' from NULL
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp: In member function `char affymetrix_fusion_io::FusionCDFProbeInformation::GetTBase() const':
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:433: warning: converting to non-pointer type `char' from NULL
fusion_sdk/calvin_files/data/src/BitFlag.h: At global scope:
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp:21:
fusion_sdk/file/CDFFileData.h:30: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCELData.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/fusion/src/FusionCELData.h:36: warning: `class affymetrix_fusion_io::FusionCELData' has virtual functions but non-virtual destructor
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp -o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:25: warning: ignoring #pragma warning
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h: In constructor `affymetrix_calvin_parameter::ParameterNameValueType::ParameterNameValueType(const std::wstring&, const void*, int32_t, const std::wstring&)':
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:345: warning: `affymetrix_calvin_parameter::ParameterNameValueType::Value' will be initialized after
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:342: warning: `std::wstring affymetrix_calvin_parameter::ParameterNameValueType::Type'
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:130: warning: when initialized here
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h: In constructor `affymetrix_calvin_parameter::ParameterNameValueType::ParameterNameValueType(const std::wstring&, const affymetrix_calvin_parameter::MIMEValue&, const std::wstring&)':
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:345: warning: `affymetrix_calvin_parameter::ParameterNameValueType::Value' will be initialized after
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:342: warning: `std::wstring affymetrix_calvin_parameter::ParameterNameValueType::Type'
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:138: warning: when initialized here
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp: In member function `std::wstring affymetrix_calvin_parameter::ParameterNameValueDefaultRequiredType::DefaultToString()':
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:444: warning: enumeration value `UnknownType' not handled in switch
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp: In member function `std::wstring affymetrix_calvin_parameter::ParameterNameValueType::ToString() const':
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:399: warning: enumeration value `UnknownType' not handled in switch
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:22:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CelFileReader.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/data/src/CELData.h:27,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:22:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp: In member function `void affymetrix_calvin_io::DataGroupHeaderReader::ReadNextDataGroupFilePos(std::ifstream&, affymetrix_calvin_io::DataGroupHeader&)':
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:122: warning: unused variable 'z'
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp: In member function `void affymetrix_calvin_io::DataGroupHeaderReader::ReadFirstDataSetFilePos(std::ifstream&, affymetrix_calvin_io::DataGroupHeader&)':
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:133: warning: unused variable 'z'
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp: In member function `u_int32_t affymetrix_calvin_io::DataGroupHeaderReader::ReadDataSetCnt(std::ifstream&, affymetrix_calvin_io::DataGroupHeader&)':
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:144: warning: unused variable 'z'
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp: In member function `void affymetrix_calvin_io::DataGroupHeaderReader::ReadDataGroupName(std::ifstream&, affymetrix_calvin_io::DataGroupHeader&)':
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:155: warning: unused variable 'z'
fusion_sdk/calvin_files/data/src/BitFlag.h: At global scope:
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:27,
from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp: In member function `void affymetrix_calvin_io::DataSetHeaderReader::ReadParameters(std::ifstream&, affymetrix_calvin_io::DataSetHeader&)':
fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:160: warning: deleting `const void*' is undefined
fusion_sdk/calvin_files/data/src/BitFlag.h: At global scope:
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetReader.o
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
from fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/FileInput.cpp -o fusion_sdk/calvin_files/parsers/src/FileInput.o
fusion_sdk/calvin_files/parsers/src/FileInput.cpp:27: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o
fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp: In member function `void affymetrix_calvin_io::GenericDataHeaderReader::Read(affymetrix_calvin_io::GenericDataHeader&)':
fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp:63: warning: deleting `const void*' is undefined
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp -o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:29: warning: ignoring #pragma warning
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp: In function `void InitializeRandomNumberGenerator()':
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:50: warning: cast from pointer to integer of different size
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp: In constructor `affymetrix_calvin_utilities::AffymetrixGuid::AffymetrixGuid()':
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:66: warning: unused variable 'nResult'
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/utils/src/DateTime.cpp -o fusion_sdk/calvin_files/utils/src/DateTime.o
fusion_sdk/calvin_files/utils/src/DateTime.cpp: In static member function `static affymetrix_calvin_utilities::DateTime affymetrix_calvin_utilities::DateTime::Parse(std::wstring)':
fusion_sdk/calvin_files/utils/src/DateTime.cpp:160: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/utils/src/DateTime.cpp:172: warning: comparison between signed and unsigned integer expressions
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/utils/src/FileUtils.cpp -o fusion_sdk/calvin_files/utils/src/FileUtils.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/utils/src/StringUtils.cpp -o fusion_sdk/calvin_files/utils/src/StringUtils.o
fusion_sdk/calvin_files/utils/src/StringUtils.cpp:27: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/calvin_files/utils/src/checksum.cpp -o fusion_sdk/calvin_files/utils/src/checksum.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/file/BPMAPFileData.cpp -o fusion_sdk/file/BPMAPFileData.o
In file included from fusion_sdk/file/BPMAPFileData.cpp:20:
fusion_sdk/file/BPMAPFileData.h:29: warning: ignoring #pragma warning
fusion_sdk/file/BPMAPFileData.cpp: In member function `bool affxbpmap::CBPMAPFileData::ReadDataSection()':
fusion_sdk/file/BPMAPFileData.cpp:369: warning: unused variable 'probeIn'
fusion_sdk/file/BPMAPFileData.cpp:370: warning: unused variable 'probeOut'
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/file/BPMAPFileWriter.cpp -o fusion_sdk/file/BPMAPFileWriter.o
In file included from fusion_sdk/file/BPMAPFileWriter.h:26,
from fusion_sdk/file/BPMAPFileWriter.cpp:20:
fusion_sdk/file/BPMAPFileData.h:29: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/file/CDFFileData.cpp -o fusion_sdk/file/CDFFileData.o
In file included from fusion_sdk/file/CDFFileData.cpp:28:
fusion_sdk/file/CDFFileData.h:30: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/file/CELFileData.cpp -o fusion_sdk/file/CELFileData.o
fusion_sdk/file/CELFileData.cpp:33: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/file/FileIO.cpp -o fusion_sdk/file/FileIO.o
fusion_sdk/file/FileIO.cpp:31: warning: ignoring #pragma warning
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c fusion_sdk/file/FileWriter.cpp -o fusion_sdk/file/FileWriter.o
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c R_affx_cel_parser.cpp -o R_affx_cel_parser.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:30,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
from R_affx_cel_parser.cpp:1:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from R_affx_cel_parser.cpp:1:
fusion_sdk/calvin_files/fusion/src/FusionCELData.h:36: warning: `class affymetrix_fusion_io::FusionCELData' has virtual functions but non-virtual destructor
In file included from d:/biocbld/1.9d/R/include/R.h:49,
from R_affx_cel_parser.cpp:10:
d:/biocbld/1.9d/R/include/R_ext/RS.h:40:1: warning: "ERROR" redefined
In file included from d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.2/../../../../include/windows.h:52,
from fusion_sdk/calvin_files/data/src/DataSet.h:32,
from fusion_sdk/calvin_files/data/src/GenericData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
from R_affx_cel_parser.cpp:1:
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.2/../../../../include/wingdi.h:311:1: warning: this is the location of the previous definition
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c R_affx_cdf_parser.cpp -o R_affx_cdf_parser.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from R_affx_cdf_parser.cpp:1:
fusion_sdk/file/CDFFileData.h:30: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
from R_affx_cdf_parser.cpp:1:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from d:/biocbld/1.9d/R/include/R.h:49,
from R_affx_cdf_parser.cpp:9:
d:/biocbld/1.9d/R/include/R_ext/RS.h:40:1: warning: "ERROR" redefined
In file included from d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.2/../../../../include/windows.h:52,
from fusion_sdk/file/CDFFileData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from R_affx_cdf_parser.cpp:1:
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.2/../../../../include/wingdi.h:311:1: warning: this is the location of the previous definition
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c R_affx_cdf_extras.cpp -o R_affx_cdf_extras.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from R_affx_cdf_extras.cpp:1:
fusion_sdk/file/CDFFileData.h:30: warning: ignoring #pragma warning
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
from fusion_sdk/calvin_files/data/src/CDFData.h:27,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
from R_affx_cdf_extras.cpp:1:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from d:/biocbld/1.9d/R/include/R.h:49,
from R_affx_cdf_extras.cpp:9:
d:/biocbld/1.9d/R/include/R_ext/RS.h:40:1: warning: "ERROR" redefined
In file included from d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.2/../../../../include/windows.h:52,
from fusion_sdk/file/CDFFileData.h:31,
from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
from R_affx_cdf_extras.cpp:1:
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.2/../../../../include/wingdi.h:311:1: warning: this is the location of the previous definition
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++ -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -D_USE_MEM_MAPPING_ -Id:/biocbld/1.9d/R/include -Wall -O2 -c R_affx_bpmap_parser.cpp -o R_affx_bpmap_parser.o
In file included from R_affx_bpmap_parser.cpp:1:
fusion_sdk/file/BPMAPFileData.h:29: warning: ignoring #pragma warning
In file included from d:/biocbld/1.9d/R/include/R.h:49,
from R_affx_bpmap_parser.cpp:10:
d:/biocbld/1.9d/R/include/R_ext/RS.h:40:1: warning: "ERROR" redefined
In file included from d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.2/../../../../include/windows.h:52,
from fusion_sdk/file/BPMAPFileData.h:30,
from R_affx_bpmap_parser.cpp:1:
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.2/../../../../include/wingdi.h:311:1: warning: this is the location of the previous definition
R_affx_bpmap_parser.cpp: In function `SEXPREC* R_affx_bpmap_seqinfo_item(affxbpmap::CGDACSequenceItem&, int)':
R_affx_bpmap_parser.cpp:78: warning: unused variable 'tmp'
R_affx_bpmap_parser.cpp: In function `SEXPREC* R_affx_get_bpmap_file(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
R_affx_bpmap_parser.cpp:314: warning: unused variable 'seqInfo'
R_affx_bpmap_parser.cpp:314: warning: unused variable 'seqInfoNames'
R_affx_bpmap_parser.cpp:314: warning: unused variable 'seqInfoParameters'
R_affx_bpmap_parser.cpp:315: warning: unused variable 'seqInfoParameterNames'
R_affx_bpmap_parser.cpp:312: warning: 'pmx' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:312: warning: 'pmy' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:312: warning: 'mmx' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:312: warning: 'mmy' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:312: warning: 'probeseq' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:312: warning: 'strand' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:312: warning: 'probelength' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:313: warning: 'matchscore' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:313: warning: 'startpos' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:313: warning: 'centerpos' might be used uninitialized in this function
windres --include-dir d:/biocbld/1.9d/R/include -i affxparser_res.rc -o affxparser_res.o
g++ -shared -s -o affxparser.dll affxparser.def fusion_sdk/calvin_files/data/src/BitFlag.o fusion_sdk/calvin_files/data/src/CDFData.o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o fusion_sdk/calvin_files/data/src/CELData.o fusion_sdk/calvin_files/data/src/DataGroup.o fusion_sdk/calvin_files/data/src/DataGroupHeader.o fusion_sdk/calvin_files/data/src/DataSet.o fusion_sdk/calvin_files/data/src/DataSetHeader.o fusion_sdk/calvin_files/data/src/FileHeader.o fusion_sdk/calvin_files/data/src/GenericData.o fusion_sdk/calvin_files/data/src/GenericDataHeader.o fusion_sdk/calvin_files/exception/src/ExceptionBase.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o fusion_sdk/calvin_files/fusion/src/FusionCELData.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o fusion_sdk/calvin_files/parsers/src/CelFileReader.o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataSetReader.o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o fusion_sdk/calvin_files/parsers/src/FileInput.o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o fusion_sdk/calvin_files/utils/src/DateTime.o fusion_sdk/calvin_files/utils/src/FileUtils.o fusion_sdk/calvin_files/utils/src/StringUtils.o fusion_sdk/calvin_files/utils/src/checksum.o fusion_sdk/file/BPMAPFileData.o fusion_sdk/file/BPMAPFileWriter.o fusion_sdk/file/CDFFileData.o fusion_sdk/file/CELFileData.o fusion_sdk/file/FileIO.o fusion_sdk/file/FileWriter.o R_affx_cel_parser.o R_affx_cdf_parser.o R_affx_cdf_extras.o R_affx_bpmap_parser.o affxparser_res.o -Ld:/biocbld/1.9d/R/bin -lws2_32 -lR
... DLL made
installing DLL
installing R files
save image
installing inst files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'affxparser'
Formats: text html latex example chm
1._Dictionary text html latex chm
2._Cell_coordinates_and_cell_indi text html latex chm
9._Advanced_-_Cell-index_maps_for text html latex chm
affxparser-package text html latex chm
affxparserInfo text html latex example chm
applyCdfGroups text html latex example chm
cdfAddBaseMmCounts text html latex chm
cdfAddProbeOffsets text html latex chm
cdfGetFields text html latex chm
cdfGetGroups text html latex chm
cdfGtypeCelToPQ text html latex chm
cdfMergeAlleles text html latex chm
cdfMergeStrands text html latex chm
cdfMergeToQuartets text html latex chm
cdfOrderBy text html latex chm
cdfOrderColumnsBy text html latex chm
findCdf text html latex example chm
findFiles text html latex chm
invertMap text html latex example chm
readCdf text html latex chm
readCdfCellIndices text html latex chm
readCdfGroupNames text html latex chm
readCdfHeader text html latex example chm
readCdfIsPm text html latex chm
readCdfNbrOfCellsPerUnitGroup text html latex example chm
readCdfUnitNames text html latex example chm
readCdfUnits text html latex example chm
readCdfUnitsWriteMap text html latex example chm
readCel text html latex example chm
readCelHeader text html latex example chm
readCelIntensities text html latex example chm
readCelRectangle text html latex example chm
readCelUnits text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\1.9d\Rpacks\affxparser.Rcheck\00_pkg_src\affxparser\chm\affxparser.chm
Compile time: 0 minutes, 0 seconds
34 Topics
127 Local links
38 Internet links
1 Graphic
Created d:\biocbld\1.9d\Rpacks\affxparser.Rcheck\00_pkg_src\affxparser\chm\affxparser.chm, 72,481 bytes
Compression decreased file by 90,052 bytes.
preparing package affxparser for lazy loading
adding MD5 sums
* DONE (affxparser)