Package: SBMLR

Version: 1.27.0

Command: D:\biocbld\1.9d\R\bin\R.exe CMD check SBMLR_1.27.0.tar.gz

RetCode: 1

Time: 37.5 seconds

Status: ERROR

CheckDir: SBMLR.Rcheck

Warnings: NA

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.9d/Rpacks/SBMLR.Rcheck'
* using R version 2.4.0 Under development (unstable) (2006-06-04 r38279)
* checking for file 'SBMLR/DESCRIPTION' ... OK
* this is package 'SBMLR' version '1.27.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SBMLR' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating SBMLR-Ex.R ... OK
* checking examples ... ERROR
Running examples in SBMLR-Ex.R failed.
The error most likely occurred in:

> ### * simulate
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: simulate
> ### Title: Simulate a model of class SBML
> ### Aliases: simulate
> ### Keywords: math
> 
> ### ** Examples
> 
> ##---- The following example performs a perturbation in PRPP from 5 to 50 uM in Curto et al.'s model.
> library(SBMLR) 
> library(odesolve)
> curto=readSBML(file.path(.path.package("SBMLR"), "models/curto.xml"))  
> out1=simulate(curto,seq(-20,0,1))
Warning: intdy--  t (=r1) illegal 
Warning: t not in interval tcur - hu (= r1) to tcur (=r2)
Warning: intdy--  t (=r1) illegal 
Warning: t not in interval tcur - hu (= r1) to tcur (=r2)
Warning: lsoda--  trouble from intdy. itask = i1, tout = r1
Error in lsoda(y = y0, times = times, fderiv, parms = c(mod = mod), rtol = 1e-04,  : 
	Illegal input to lsoda
Execution halted

installing R.css in D:/biocbld/1.9d/Rpacks/SBMLR.Rcheck


---------- Making package SBMLR ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'SBMLR'
     Formats: text html latex example chm 
  equateModels                      text    html    latex   example chm
  makeLaw                           text    html    latex   example chm
  readSBML                          text    html    latex   example chm
  readSBMLR                         text    html    latex   example chm
  saveSBML                          text    html    latex   example chm
  saveSBMLR                         text    html    latex   example chm
  simulate                          text    html    latex   example chm
  summary.SBML                      text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.9d\Rpacks\SBMLR.Rcheck\00_pkg_src\SBMLR\chm\SBMLR.chm


Compile time: 0 minutes, 0 seconds
9	Topics
22	Local links
0	Internet links
1	Graphic


Created d:\biocbld\1.9d\Rpacks\SBMLR.Rcheck\00_pkg_src\SBMLR\chm\SBMLR.chm, 24,955 bytes
Compression decreased file by 3,076 bytes.
  preparing package SBMLR for lazy loading
  adding MD5 sums

* DONE (SBMLR)