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Package 135/172OSArchBUILDCHECKBUILD BIN

reposTools

1.10.0

Seth Falcon		Linux (SUSE 9.2) x86_64 OK  ERROR 
Linux (SUSE 9.2) i686 OK [ ERROR ]
Solaris 2.9 sparc OK  ERROR 
Linux (SUSE 10.0) x86_64 OK  ERROR 
Windows Server 2003 x86_64 OK  ERROR  OK 
Package: reposTools
Version: 1.10.0
Command: /loc/biocbuild/1.8d/R/bin/R CMD check reposTools_1.10.0.tar.gz
RetCode: 1
Time: 63.5 seconds
Status: ERROR
CheckDir: reposTools.Rcheck
Warnings: NA

Command output

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/1.8d/Rpacks/reposTools.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'reposTools/DESCRIPTION' ... OK
* this is package 'reposTools' version '1.10.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'reposTools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating reposTools-Ex.R ... OK
* checking examples ... ERROR
Running examples in reposTools-Ex.R failed.
The error most likely occurred in:

> ### * getDependings
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: getDependings
> ### Title: A function to retrieve which packages depend on which
> ### Aliases: getDependings
> ### Keywords: utilities
> 
> ### ** Examples
> 
> z <- getDependings(contrib.url("http://bioconductor.org"))
trying URL 'http://bioconductor.org/src/contrib/PACKAGES'
Warning: cannot open: HTTP status was '404 Not Found'
Error in download.file(url = paste(repository, "PACKAGES", sep = "/"),  : 
	cannot open URL 'http://bioconductor.org/src/contrib/PACKAGES'
Execution halted

reposTools.Rcheck/00install.out:

* Installing *source* package 'reposTools' ...
** R
** data
** inst
** save image
Loading required package: tools
[1] "replisting"
[1] "replisting"
[1] "repURL"
Creating a new generic function for 'summary' in 'reposTools'
[1] "summary"
[1] "repReleaseLevel"
[1] "repReleaseLevel"
[1] "show"
[1] "replisting"
[1] "repURL"
[1] "numSubReps"
[1] "numSubReps"
[1] "repdatadesc"
[1] "repdatadesc"
[1] "repdatadesc"
[1] "summary"
[1] "depends"
[1] "depends"
[1] "suggests"
[1] "suggests"
[1] "imports"
[1] "imports"
[1] "keywords"
[1] "keywords"
[1] "show"
[1] "ReposList"
[1] "repList"
[1] "repList"
[1] "repList<-"
[1] "repList<-"
[1] "numReps"
[1] "numReps"
[1] "getRepEntry"
[1] "getRepEntry"
[1] "repPkgs"
[1] "repPkgs"
[1] "repPkgInfoList"
[1] "repPkgInfoList"
[1] "repNames"
[1] "repNames"
[1] "repURLs"
[1] "repURLs"
[1] "show"
[1] "ReposEntry"
[1] "repType"
[1] "repName"
[1] "reposThemes"
[1] "reposThemes"
[1] "repType"
[1] "replisting"
[1] "repdatadesc"
[1] "repName"
[1] "repURL"
[1] "repdataframe"
[1] "repdataframe"
[1] "numSubReps"
[1] "getSubRep"
[1] "getSubRep"
[1] "getSubRepList"
[1] "getSubRepList"
[1] "depends"
[1] "suggests"
[1] "imports"
[1] "keywords"
[1] "hasFiles"
[1] "hasFiles"
[1] "pkgRVersion"
[1] "pkgRVersion"
[1] "repPkgs"
[1] "repObjects"
[1] "repObjects"
[1] "repPkgInfos"
[1] "repPkgInfos"
[1] "downloadFile"
[1] "downloadFile"
[1] "repReleaseLevel"
[1] "summary"
[1] "show"
[1] "pkgListing"
[1] "pkgList"
[1] "pkgList"
[1] "repList"
[1] "repListing"
[1] "repListing"
[1] "getRepEntry"
[1] "getRepURL"
[1] "getRepURL"
[1] "packages"
[1] "packages"
[1] "pkgVersionList"
[1] "pkgVersionList"
[1] "summary"
[1] "show"
[1] "reposTheme"
[1] "repThemeName"
[1] "repThemeName"
[1] "repThemePkgs"
[1] "repThemePkgs"
[1] "repThemeDesc"
[1] "repThemeDesc"
[1] "repThemeRepos"
[1] "repThemeRepos"
[1] "show"
[1] "VersionNumber"
[1] "stringRep"
[1] "major"
[1] "minor"
[1] "revision"
[1] "stringRep"
[1] "major"
[1] "minor"
[1] "revision"
[1] "show"
[1] "=="
[1] "!="
[1] ">"
[1] "<"
[1] ">="
[1] "<="
[1] "as.character"
[1] "pkgInfo"
[1] "pkgName"
[1] "pkgVersion"
[1] "pkgRelLevel"
[1] "pkgPath"
[1] "pkgContains"
[1] "pkgRelLevel"
[1] "pkgName"
[1] "pkgVersion"
[1] "pkgPath"
[1] "pkgContains"
[1] "=="
[1] "show"
[1] "localPkg"
[1] "Package"
[1] "Package"
[1] "PkgVersion"
[1] "PkgVersion"
[1] "Keywords"
[1] "Keywords"
[1] "Depends"
[1] "Depends"
[1] "Suggests"
[1] "Suggests"
[1] "Imports"
[1] "Imports"
[1] "Repos"
[1] "Repos"
[1] "Bundle"
[1] "Bundle"
[1] "pkgStatusList"
[1] "show"
[1] "statusList"
[1] "statusList"
[1] "statusList<-"
[1] "statusList<-"
[1] "matchesList"
[1] "matchesList"
[1] "matchesList<-"
[1] "matchesList<-"
[1] "packages"
[1] "found"
[1] "found"
[1] "notFound"
[1] "notFound"
[1] "updated"
[1] "updated"
[1] "notUpdated"
[1] "notUpdated"
[1] "urls"
[1] "urls"
[1] "pkgVersions"
[1] "pkgVersions"
[1] "foundPkgs"
[1] "foundPkgs"
[1] "notFoundPkgs"
[1] "notFoundPkgs"
[1] "updatedPkgs"
[1] "updatedPkgs"
[1] "getPackage"
[1] "getPackage"
[1] "getFound"
[1] "getFound"
[1] "getUpdated"
[1] "getUpdated"
[1] "getUrl"
[1] "getUrl"
[1] "getPkgVersion"
[1] "getPkgVersion"
[1] "pkgStatus"
[1] "package"
[1] "package"
[1] "found"
[1] "updated"
[1] "URL"
[1] "URL"
[1] "pkgVersion"
[1] "show"
** help
 >>> Building/Updating help pages for package 'reposTools'
     Formats: text html latex example 
  ReposEntry-class                  text    html    latex   example
  ReposList-class                   text    html    latex   example
  VersionNumber-class               text    html    latex   example
  browseRepos                       text    html    latex   example
  buildPkgInfo                      text    html    latex   example
  buildReposEntry                   text    html    latex   example
  buildVersionNumber                text    html    latex   example
  checkRepos                        text    html    latex   example
  checkVers                         text    html    latex   example
  closeLocLib                       text    html    latex   example
  download.packages2                text    html    latex   example
  genRepos                          text    html    latex   example
  genReposHTML                      text    html    latex   example
  getDependings                     text    html    latex   example
  getDesciptionCon                  text    html    latex
  getExt                            text    html    latex   example
  getLocalPkgs                      text    html    latex   example
  getMaxVersion                     text    html    latex   example
  getOptReposList                   text    html    latex   example
  getPackageDescriptionAsMatrix     text    html    latex
  getPkgVers                        text    html    latex   example
  getReplisting                     text    html    latex   example
  getReposEntry                     text    html    latex   example
  getReposList                      text    html    latex   example
  getReposOption                    text    html    latex   example
  getRversion                       text    html    latex   example
  initVersionNumber                 text    html    latex
  install.packages2                 text    html    latex   example
  load.locLib                       text    html    latex   example
  loadDepends                       text    html    latex   example
  loadRepDD                         text    html    latex   example
  localPkg-class                    text    html    latex   example
  note                              text    html    latex   example
  parsePackageName                  text    html    latex
  parseThemesXML                    text    html    latex   example
  pkgInfo-class                     text    html    latex   example
  pkgListing-class                  text    html    latex   example
  pkgStatus-class                   text    html    latex   example
  pkgStatusList-class               text    html    latex   example
  repdatadesc-class                 text    html    latex   example
  replisting-class                  text    html    latex   example
  reposTheme-class                  text    html    latex   example
  reposToolsLibPaths                text    html    latex   example
  repositories                      text    html    latex   example
  resolve.depends                   text    html    latex   example
  save.locLib                       text    html    latex   example
  saveDfRda                         text    html    latex   example
  splitDFstrings                    text    html    latex   example
  syncLocalLibList                  text    html    latex   example
  themes                            text    html    latex   example
  unpackSourcePkg                   text    html    latex
  untgz                             text    html    latex
  userQuery                         text    html    latex   example
  winConvertSourceRepos             text    html    latex   example
  writeThemesXML                    text    html    latex   example
** building package indices ...
* DONE (reposTools)