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| Package 28/172 | OS | Arch | BUILD | CHECK | BUILD BIN |
bridge1.4.0Raphael Gottardo | Linux (SUSE 9.2) | x86_64 | OK | OK | |
| Linux (SUSE 9.2) | i686 | OK | OK | ||
| Solaris 2.9 | sparc | OK | OK | ||
| Linux (SUSE 10.0) | x86_64 | OK | OK | ||
| Windows Server 2003 | x86_64 | OK | [ OK ] | OK |
| Package: bridge |
| Version: 1.4.0 |
| Command: D:\biocbld\1.8d\R\bin\R.exe CMD check bridge_1.4.0.tar.gz |
| RetCode: 0 |
| Time: 139.4 seconds |
| Status: OK |
| CheckDir: bridge.Rcheck |
| Warnings: 0 |
* checking for working latex ... OK * using log directory 'D:/biocbld/1.8d/Rpacks/bridge.Rcheck' * using Version 2.3.1 (2006-06-01) * checking for file 'bridge/DESCRIPTION' ... OK * this is package 'bridge' version '1.4.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'bridge' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking Rd files ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * creating bridge-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating bridge-manual.tex ... OK * checking bridge-manual.tex ... OK
bridge.Rcheck/00install.out:
installing R.css in D:/biocbld/1.8d/Rpacks/bridge.Rcheck
---------- Making package bridge ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making bridge2.affy.d from bridge2.affy.c
making bridge2.d from bridge2.c
making bridge2_util.d from bridge2_util.c
making bridge3.d from bridge3.c
gcc -Id:/biocbld/1.8d/R/include -Wall -O2 -c bridge2.affy.c -o bridge2.affy.o
bridge2.affy.c: In function `gene_express_2s':
bridge2.affy.c:36: warning: unused variable `old_model'
bridge2.affy.c:37: warning: unused variable `count_model'
bridge2.affy.c: In function `up_date_w2':
bridge2.affy.c:300: warning: implicit declaration of function `dirichlet'
bridge2.affy.c:280: warning: unused variable `w_new'
gcc -Id:/biocbld/1.8d/R/include -Wall -O2 -c bridge2.c -o bridge2.o
bridge2.c: In function `mcmc':
bridge2.c:138: warning: unused variable `rho_new'
bridge2.c:142: warning: unused variable `sum_rho'
bridge2.c:142: warning: unused variable `sum_rho_new'
bridge2.c:143: warning: unused variable `dens_rho'
bridge2.c:143: warning: unused variable `dens_rho_new'
bridge2.c:145: warning: unused variable `pi'
bridge2.c:154: warning: unused variable `dens_t'
bridge2.c:154: warning: unused variable `dens_t_new'
bridge2.c:159: warning: unused variable `post_mean_mu'
bridge2.c:159: warning: unused variable `post_prec_mu'
bridge2.c:160: warning: unused variable `post_mean_beta'
bridge2.c:160: warning: unused variable `post_prec_beta'
bridge2.c:161: warning: unused variable `post_mean_alpha'
bridge2.c:161: warning: unused variable `post_prec_alpha'
bridge2.c:162: warning: unused variable `post_mean_delta'
bridge2.c:162: warning: unused variable `post_prec_delta'
bridge2.c:163: warning: unused variable `post_mean_eta'
bridge2.c:163: warning: unused variable `post_prec_eta'
bridge2.c:165: warning: unused variable `l_ab'
bridge2.c:165: warning: unused variable `l_ab_new'
bridge2.c:166: warning: unused variable `a_eps_new'
bridge2.c:166: warning: unused variable `b_eps_new'
bridge2.c:171: warning: unused variable `countrho'
bridge2.c:173: warning: unused variable `counta'
bridge2.c:174: warning: unused variable `counta_eps'
bridge2.c:175: warning: unused variable `countb_eps'
bridge2.c:177: warning: unused variable `countp'
bridge2.c:191: warning: unused variable `sum_res1'
bridge2.c:192: warning: unused variable `sum_res2'
bridge2.c:198: warning: unused variable `old_b'
bridge2.c:198: warning: unused variable `width_b'
bridge2.c:199: warning: unused variable `old_a'
bridge2.c:199: warning: unused variable `width_a'
gcc -Id:/biocbld/1.8d/R/include -Wall -O2 -c bridge2_util.c -o bridge2_util.o
bridge2_util.c: In function `qr_solve':
bridge2_util.c:570: warning: implicit declaration of function `dqrdc2_'
bridge2_util.c:585: warning: implicit declaration of function `dqrcf_'
bridge2_util.c:549: warning: unused variable `vmax'
bridge2_util.c: In function `inverse':
bridge2_util.c:608: warning: unused variable `j'
bridge2_util.c: In function `product_mat_vec':
bridge2_util.c:655: warning: unused variable `k'
bridge2_util.c: In function `slice_sampling_b':
bridge2_util.c:763: warning: suggest parentheses around comparison in operand of &
bridge2_util.c:771: warning: suggest parentheses around comparison in operand of &
bridge2_util.c: In function `slice_sampling_a':
bridge2_util.c:818: warning: suggest parentheses around comparison in operand of &
bridge2_util.c:826: warning: suggest parentheses around comparison in operand of &
bridge2_util.c: In function `slice_sampling_rho':
bridge2_util.c:875: warning: suggest parentheses around comparison in operand of &
bridge2_util.c:884: warning: suggest parentheses around comparison in operand of &
bridge2_util.c: In function `slice_sampling_p':
bridge2_util.c:961: warning: suggest parentheses around comparison in operand of &
bridge2_util.c:969: warning: suggest parentheses around comparison in operand of &
gcc -Id:/biocbld/1.8d/R/include -Wall -O2 -c bridge3.c -o bridge3.o
bridge3.c: In function `gene_express_3s':
bridge3.c:38: warning: unused variable `old_model'
bridge3.c:39: warning: unused variable `count_model'
bridge3.c: In function `gibbs_mu':
bridge3.c:335: warning: suggest parentheses around comparison in operand of &
bridge3.c: In function `up_date_w':
bridge3.c:365: warning: unused variable `w_new'
windres --include-dir d:/biocbld/1.8d/R/include -i bridge_res.rc -o bridge_res.o
gcc -shared -s -o bridge.dll bridge.def bridge2.affy.o bridge2.o bridge2_util.o bridge3.o bridge_res.o -Ld:/biocbld/1.8d/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'bridge'
Formats: text html latex example chm
bridge.2samples text html latex example chm
bridge.3samples text html latex example chm
hiv text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\1.8d\Rpacks\bridge.Rcheck\00_pkg_src\bridge\chm\bridge.chm
Compile time: 0 minutes, 0 seconds
4 Topics
8 Local links
0 Internet links
1 Graphic
Created d:\biocbld\1.8d\Rpacks\bridge.Rcheck\00_pkg_src\bridge\chm\bridge.chm, 23,489 bytes
Compression decreased file by 1,535 bytes.
adding MD5 sums
* DONE (bridge)