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Package 125/172OSArchBUILDCHECKBUILD BIN

plier

1.4.0

Crispin Miller		Linux (SUSE 9.2) x86_64 OK [ OK ]
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc OK  OK 
Linux (SUSE 10.0) x86_64 OK  OK 
Windows Server 2003 x86_64 OK  OK  OK 
Package: plier
Version: 1.4.0
Command: /loc/biocbuild/1.8d/R/bin/R CMD check plier_1.4.0.tar.gz
RetCode: 0
Time: 56.8 seconds
Status: OK
CheckDir: plier.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.8d/Rpacks/plier.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'plier/DESCRIPTION' ... OK
* this is package 'plier' version '1.4.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plier' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* creating plier-Ex.R ... OK
* checking examples ... OK
* creating plier-manual.tex ... OK
* checking plier-manual.tex ... OK

plier.Rcheck/00install.out:

* Installing *source* package 'plier' ...
** libs
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -Wall -c affyplier.cpp -o affyplier.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -Wall -c plieralg.cpp -o plieralg.o
plieralg.cpp: In function `long int NewtonPlier(plier_data*, double&)':
plieralg.cpp:909: warning: `double LogLikelihood' might be used uninitialized 
   in this function
plieralg.cpp: At top level:
plieralg.cpp:48: warning: `int g_ErrorCode' defined but not used
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -Wall -c plier_impl.cpp -o plier_impl.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -Wall -c rwrapper.cpp -o rwrapper.o
g++ -shared -L/usr/local/lib64 -o plier.so affyplier.o plieralg.o plier_impl.o rwrapper.o   
** R
** help
 >>> Building/Updating help pages for package 'plier'
     Formats: text html latex example 
  justPlier                         text    html    latex   example
** building package indices ...
* DONE (plier)