Package: twilight

Version: 1.8.0

Command: /home/biocbuild/1.8d/R/bin/R CMD check twilight_1.8.0.tar.gz

RetCode: 0

Time: 218.9 seconds

Status: OK

CheckDir: twilight.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/home/biocbuild/1.8d/Rpacks/twilight.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'twilight/DESCRIPTION' ... OK
* this is package 'twilight' version '1.8.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'twilight' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* creating twilight-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating twilight-manual.tex ... OK
* checking twilight-manual.tex ... OK

* Installing *source* package 'twilight' ...
** libs
gcc -I/home/biocbuild/1.8d/R/include -I/home/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c confidence.line.c -o confidence.line.o
gcc -I/home/biocbuild/1.8d/R/include -I/home/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c correlation.c -o correlation.o
gcc -I/home/biocbuild/1.8d/R/include -I/home/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c kstest.c -o kstest.o
gcc -I/home/biocbuild/1.8d/R/include -I/home/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c sep.c -o sep.o
gcc -I/home/biocbuild/1.8d/R/include -I/home/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c twosample.perm.c -o twosample.perm.o
gcc -I/home/biocbuild/1.8d/R/include -I/home/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c twosample.single.c -o twosample.single.o
gcc -shared -L/usr/local/lib64 -o twilight.so confidence.line.o correlation.o kstest.o sep.o twosample.perm.o twosample.single.o   
** R
** data
** inst
** preparing package for lazy loading
Loading required package: splines
** help
 >>> Building/Updating help pages for package 'twilight'
     Formats: text html latex example 
  exfdr                             text    html    latex
  expval                            text    html    latex
  plot.twilight                     text    html    latex   example
  print.twilight                    text    html    latex   example
  twilight                          text    html    latex   example
  twilight.combi                    text    html    latex   example
  twilight.filtering                text    html    latex   example
  twilight.getlambda                text    html    latex
  twilight.getmatrix                text    html    latex
  twilight.permute.pair             text    html    latex
  twilight.permute.unpair           text    html    latex
  twilight.pval                     text    html    latex   example
  twilight.teststat                 text    html    latex   example
** building package indices ...
* DONE (twilight)