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| Package 45/172 | OS | Arch | BUILD | CHECK | BUILD BIN |
EBImage1.2.2Oleg Sklyar | Linux (SUSE 9.2) | x86_64 | OK | WARNINGS | |
| Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
| Solaris 2.9 | sparc | OK | ERROR | ||
| Linux (SUSE 10.0) | x86_64 | OK | [ WARNINGS ] | ||
| Windows Server 2003 | x86_64 | ERROR | skipped | skipped |
| Package: EBImage |
| Version: 1.2.2 |
| Command: /home/biocbuild/1.8d/R/bin/R CMD check EBImage_1.2.2.tar.gz |
| RetCode: 0 |
| Time: 39.5 seconds |
| Status: WARNINGS |
| CheckDir: EBImage.Rcheck |
| Warnings: 5 |
* checking for working latex ... OK * using log directory '/home/biocbuild/1.8d/Rpacks/EBImage.Rcheck' * using Version 2.3.1 (2006-06-01) * checking for file 'EBImage/DESCRIPTION' ... OK * this is package 'EBImage' version '1.2.2' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'EBImage' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... WARNING See section 'Generic functions and methods' of the 'Writing R Extensions' manual. * checking replacement functions ... WARNING In R, the argument of a replacement function which corresponds to the right hand side must be named 'value'. * checking foreign function calls ... WARNING See section 'System and foreign language interfaces' of the 'Writing R Extensions' manual. * checking Rd files ... OK * checking for missing documentation entries ... WARNING All user-level objects in a package should have documentation entries. See chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking for code/documentation mismatches ... WARNING * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable compilation flags in Makevars ... OK * creating EBImage-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating EBImage-manual.tex ... OK * checking EBImage-manual.tex ... OK WARNING: There were 5 warnings, see /home/biocbuild/1.8d/Rpacks/EBImage.Rcheck/00check.log for details
EBImage.Rcheck/00install.out:
* Installing *source* package 'EBImage' ...
checking for Magick++-config... yes
ImageMagick version 6.2.3 found
checking for Magick++-config... yes
ImageMagick++ includes located in -I/usr/include
R found in: /home/biocbuild/1.8d/R
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -I/home/biocbuild/1.8d/R/include -I/home/biocbuild/1.8d/R/include -I/usr/local/include -I/usr/include -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -pthread -fpic -g -O2 -Wall -c algorithms2D.cpp -o algorithms2D.o
g++ -I/home/biocbuild/1.8d/R/include -I/home/biocbuild/1.8d/R/include -I/usr/local/include -I/usr/include -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -pthread -fpic -g -O2 -Wall -c common.cpp -o common.o
g++ -I/home/biocbuild/1.8d/R/include -I/home/biocbuild/1.8d/R/include -I/usr/local/include -I/usr/include -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -pthread -fpic -g -O2 -Wall -c conversions.cpp -o conversions.o
g++ -I/home/biocbuild/1.8d/R/include -I/home/biocbuild/1.8d/R/include -I/usr/local/include -I/usr/include -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -pthread -fpic -g -O2 -Wall -c display.cpp -o display.o
g++ -I/home/biocbuild/1.8d/R/include -I/home/biocbuild/1.8d/R/include -I/usr/local/include -I/usr/include -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -pthread -fpic -g -O2 -Wall -c filters2D.cpp -o filters2D.o
g++ -I/home/biocbuild/1.8d/R/include -I/home/biocbuild/1.8d/R/include -I/usr/local/include -I/usr/include -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -pthread -fpic -g -O2 -Wall -c filters2D_magick.cpp -o filters2D_magick.o
g++ -I/home/biocbuild/1.8d/R/include -I/home/biocbuild/1.8d/R/include -I/usr/local/include -I/usr/include -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -pthread -fpic -g -O2 -Wall -c io.cpp -o io.o
g++ -I/home/biocbuild/1.8d/R/include -I/home/biocbuild/1.8d/R/include -I/usr/local/include -I/usr/include -O2 -fmessage-length=0 -Wall -D_FORTIFY_SOURCE=2 -g -pthread -fpic -g -O2 -Wall -c libmain.cpp -o libmain.o
g++ -shared -L/usr/local/lib64 -o EBImage.so algorithms2D.o common.o conversions.o display.o filters2D.o filters2D_magick.o io.o libmain.o -L/usr/lib64 -L/usr/lib64 -L/usr/X11R6/lib64 -lfreetype -lz -L/usr/lib -lMagick++ -lWand -lMagick -llcms -ltiff -lfreetype -ljpeg -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lpthread -lm -lpthread
** R
** inst
** save image
** help
>>> Building/Updating help pages for package 'EBImage'
Formats: text html latex example
algorithms2D.objectCount text html latex example
class.Image2D text html latex example
class.Image3D text html latex example
filters2D.distMap text html latex example
filters2D.magick-colors text html latex example
filters2D.magick-enhance text html latex example
filters2D.magick-segment text html latex example
filters2D.magick-transform text html latex example
filters2D.magick text html latex example
filters2D.thresh text html latex example
image.io text html latex example
internals text html latex
** building package indices ...
* DONE (EBImage)