Package: goCluster

Version: 1.6.0

Command: /loc/biocbuild/1.8d/R/bin/R CMD build goCluster

RetCode: 1

Time: 219.3 seconds

Status: ERROR

PackageFile: None

* checking for file 'goCluster/DESCRIPTION' ... OK
* preparing 'goCluster':
* checking DESCRIPTION meta-information ... OK
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'goCluster' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Creating a new generic function for 'print' in 'goCluster'
** help
 >>> Building/Updating help pages for package 'goCluster'
     Formats: text html latex example 
  benomylsetup                      text    html    latex   example
  checkData                         text    html    latex   example
  checkProtection                   text    html    latex   example
  checkannotationpackage            text    html    latex   example
  clusterAlgorithm-class            text    html    latex
  clusterAlgorithmClara-class       text    html    latex   example
  clusterAlgorithmHclust-class      text    html    latex   example
  clusterAlgorithmKmeans-class      text    html    latex   example
  clusterAlgorithmPam-class         text    html    latex   example
  clusterAnnotation-class           text    html    latex
  clusterAnnotationChromosome-abp-c text    html    latex   example
  clusterAnnotationGO-abp-class     text    html    latex   example
  clusterAnnotationLookup           text    html    latex   example
  clusterData-class                 text    html    latex
  clusterModule-class               text    html    latex
  clusterSignif-class               text    html    latex
  clusterSignifBase-class           text    html    latex   example
  clusterSignifBonferroni-class     text    html    latex   example
  clusterSignifFDR-class            text    html    latex   example
  clusterStatistic-class            text    html    latex
  clusterStatisticHyper-class       text    html    latex
  clusterVisual-class               text    html    latex
  clusterVisualHclust-class         text    html    latex   example
  clusterVisualHeatmap-class        text    html    latex   example
  clusterVisualNone-class           text    html    latex   example
  clusterclara                      text    html    latex   example
  clusterhclust                     text    html    latex   example
  clusterkmeans                     text    html    latex   example
  clusterpam                        text    html    latex   example
  collectTerms                      text    html    latex   example
  config-methods                    text    html    latex   example
  display-methods                   text    html    latex   example
  evalClusterHyper                  text    html    latex   example
  execute-assign-methods            text    html    latex   example
  execute-methods                   text    html    latex   example
  getChildrenClasses                text    html    latex   example
  getGeneColors                     text    html    latex   example
  goCluster-class                   text    html    latex   example
  groupCount                        text    html    latex   example
  mergeResult                       text    html    latex   example
  minimizeSelection                 text    html    latex   example
  plotAxis                          text    html    latex
  prepareAxis                       text    html    latex   example
  prepareCHRannotation              text    html    latex   example
  prepareGOannotation               text    html    latex   example
  prepareHeatmap                    text    html    latex   example
  printData                         text    html    latex   example
  reset-methods                     text    html    latex   example
  selectAnnoStats                   text    html    latex   example
  selectChild                       text    html    latex   example
  selectCore                        text    html    latex   example
  selectDouble                      text    html    latex   example
  selectNumber                      text    html    latex   example
  selectOption                      text    html    latex   example
  selectStats                       text    html    latex   example
  selectStatsBonferroni             text    html    latex   example
  selectTerms                       text    html    latex   example
  setup-assign-methods              text    html    latex   example
  setup-methods                     text    html    latex   example
** building package indices ...
* DONE (goCluster)
* creating vignettes ... ERROR

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Warning message:
there is no package called 'RBGL' in: library(pkg, character.only = TRUE, logical = TRUE, lib.loc = lib.loc) 

Error:  chunk 11 
Error: package 'RBGL' could not be loaded
Error in buildVignettes(dir = ".") : Error:  chunk 11 
Error: package 'RBGL' could not be loaded
Execution halted