bash
docker run -it ghcr.io/js2264/biocbookdemo:devel RWrite Quarto books with Bioconductor
Package: BiocBookDemo
Authors: Jacques Serizay [aut, cre]
Compiled: 2025-11-03
Package version: 1.8.0
R version: R version 4.5.1 Patched (2025-08-23 r88802)
BioC version: 3.22
License: MIT + file LICENSE
What are BiocBooks?
BiocBooks are package-based, versioned online books with a supporting Docker image for each book version.
A BiocBook can be created by authors (e.g. R developers, but also scientists, teachers, communicators, β¦) who wish to:
- Write: compile a body of biological and/or bioinformatics knowledge;
- Containerize: provide Docker images to reproduce the examples illustrated in the compendium;
- Publish: deploy an online book to disseminate the compendium;
- Version: automatically generate specific online book versions and Docker images for specific Bioconductor releases.
Tip
A {BiocBook}-based package hosted on GitHub with a branch named RELEASE_X_Y provides:
- A Docker image: hosted on ghcr.io;
- An online book (a.k.a website): hosted on the GitHub repository
gh-pagesbranch;
Both are built against the specific Bioconductor release X.Y.
A {BiocBook}-based package submitted to Bioconductor also lead to the online book being independently built by the Bioconductor Build System (BBS) and deployed to https://bioconductor.org/books/<bioc_version>/<pkg>/
What is this {BiocBook} package?
The {BiocBook} package offers a streamlined approach to creating BiocBooks, with several important benefits:
- The author creates a {
BiocBook}-based package without leaving R; - The author writes book chapters in
pages/*.qmdfiles using enhanced markdown; - The author can submit its {
BiocBook}-based package to Bioconductor.
The containerization and publishing of the new {BiocBook}-based package is automated:
- A Github Action workflow generates different Docker images for different Bioconductor releases, with the packages used in the book pre-installed;
- A Github Action workflow publishes different book versions for different Bioconductor releases.
Main features of BiocBooks
Fully compatible with the Bioconductor Build System
When a {BiocBook}-based package is accepted into Bioconductor, it is automatically integrated into the Bionconductor Build System (BBS).
This means that it is getting built using R CMD build --keep-empty-dirs --no-resave-data .. This triggers the rendering of the book contained in /inst/. Book packages built by the BBS are then automatically deployed and are eventually available at https://bioconductor.org/books/<bioc_version>/<pkg>/.
Automated versioning of Docker images
A separate Docker image is built for each branch (named devel or RELEASE_X_Y) of a {BiocBook}-based Github repository.
Each Docker image provides pre-installed R packages:
- Bioconductor release
X.Y; - Specific book dependencies from Bioconductor release
X.Y(listed inDESCRIPTION); - The book package itself
The Docker images also include a micromamba-based environment, named BiocBook, in which all the softwares listed in requirements.yml are installed.
For example, Docker images built from the {BiocBookDemo} package repository are available here:
π ghcr.io/js2264/biocbookdemo π³
Get started now π
You can get access to all the packages used in this book in < 1 minute, using this command in a terminal:
Automated versioning of the online book
Regardless of whether the book package is submitted to Bioconductor, a Github Actions workflow publishes individual online books for each branch (named devel or RELEASE_X_Y) of a BiocBook-based Github repository.
For example, the online book version matching the devel version of the {BiocBook} package is available from:
RStudio Server
An RStudio Server instance based on a specific Bioconductor <version> (devel or RELEASE_X_Y) can be initiated from the corresponding Docker image as follows:
bash
docker run \
--volume <local_folder>:<destination_folder> \
-e PASSWORD=OHCA \
-p 8787:8787 \
ghcr.io/<github_user>/<biocbook_repo>:<version>The initiated RStudio Server instance will be available at https://localhost:8787.
Further instructions regarding Bioconductor-based Docker images are available here.
Acknowledgments
This works was inspired by and closely follows the strategy used in coordination by the Bioconductor core team and Aaron Lun to submit book-containing packages (from the OSCA series as well as SingleR and csaw books).
- Orchestrating Single-Cell Analysis with Bioconductor (n.d.)
- Assigning cell types with SingleR (2023)
- The csaw Book (2023)
This package was also inspired by the *down package series, including:
Session info
Click to expand π
sessioninfo::session_info(
installed.packages()[,"Package"],
include_base = TRUE
)
## β Session info ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
## setting value
## version R version 4.5.1 Patched (2025-08-23 r88802)
## os Ubuntu 24.04.3 LTS
## system x86_64, linux-gnu
## ui X11
## language (EN)
## collate C
## ctype en_US.UTF-8
## tz America/New_York
## date 2025-11-03
## pandoc 2.7.3 @ /usr/bin/ (via rmarkdown)
## quarto 1.7.32 @ /usr/local/bin/quarto
##
## β Packages ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
## package * version date (UTC) lib source
## a4 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## a4Base 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## a4Classif 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## a4Core 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## a4Preproc 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## a4Reporting 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ABarray 1.78.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## abdiv 0.2.0 2020-01-20 [2] CRAN (R 4.5.1)
## abind 1.4-8 2024-09-12 [2] CRAN (R 4.5.1)
## abseqR 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ABSSeq 1.64.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## acde 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ACE 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## aCGH 1.88.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ACME 2.66.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## actuar 3.3-6 2025-07-08 [2] CRAN (R 4.5.1)
## ada 2.0-5 2016-05-13 [2] CRAN (R 4.5.1)
## adabag 5.1 2025-07-28 [2] CRAN (R 4.5.1)
## ADaCGH2 2.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ADAM 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ADAMgui 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ADAPT 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## additivityTests 1.1-4.2 2024-05-14 [2] CRAN (R 4.5.1)
## adductData 1.26.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## adductomicsR 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ade4 1.7-23 2025-02-14 [2] CRAN (R 4.5.1)
## ADGofTest 0.3 2011-12-28 [2] CRAN (R 4.5.1)
## ADImpute 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## admisc 0.39 2025-11-02 [2] CRAN (R 4.5.1)
## adSplit 1.80.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## adverSCarial 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## afex 1.5-0 2025-08-24 [2] CRAN (R 4.5.1)
## AffiXcan 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## affxparser 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## affy 1.88.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## affycomp 1.86.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## affycompData 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## affyContam 1.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## affycoretools 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## affydata 1.58.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## Affyhgu133A2Expr 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## Affyhgu133aExpr 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## Affyhgu133Plus2Expr 1.44.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## affyILM 1.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## affyio 1.80.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## affylmGUI 1.84.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AffymetrixDataTestFiles 0.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## Affymoe4302Expr 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## affyPLM 1.86.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AffyRNADegradation 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AGDEX 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## aggregateBioVar 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## aggregation 1.0.1 2018-01-25 [2] CRAN (R 4.5.1)
## agilp 3.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AgiMicroRna 2.60.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## agricolae 1.3-7 2023-10-22 [2] CRAN (R 4.5.1)
## AHCytoBands 0.99.1 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## AHEnsDbs 1.7.0 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## AHLRBaseDbs 1.8.0 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## AHMassBank 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AHMeSHDbs 1.8.0 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## AhoCorasickTrie 0.1.3 2025-02-05 [2] CRAN (R 4.5.1)
## AHPathbankDbs 0.99.5 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## AHPubMedDbs 1.8.0 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## AHWikipathwaysDbs 0.99.4 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## AICcmodavg 2.3-4 2025-03-06 [2] CRAN (R 4.5.1)
## AIMS 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## airpart 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## airway 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## akima 0.6-3.6 2025-06-02 [2] CRAN (R 4.5.1)
## akmbiclust 0.1.0 2020-09-24 [2] CRAN (R 4.5.1)
## alabama 2023.1.0 2023-08-22 [2] CRAN (R 4.5.1)
## alabaster 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## alabaster.base 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## alabaster.bumpy 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## alabaster.files 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## alabaster.mae 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## alabaster.matrix 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## alabaster.ranges 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## alabaster.sce 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## alabaster.schemas 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## alabaster.se 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## alabaster.sfe 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## alabaster.spatial 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## alabaster.string 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## alabaster.vcf 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ALDEx2 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## alevinQC 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AlgDesign 1.2.1.2 2025-04-06 [2] CRAN (R 4.5.1)
## ALL 1.52.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## AllelicImbalance 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ALLMLL 1.50.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## alluvial 0.1-2 2016-09-09 [2] CRAN (R 4.5.1)
## AlphaBeta 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## alphahull 2.5 2022-06-16 [2] CRAN (R 4.5.1)
## AlphaMissense.v2023.hg19 3.18.2 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## AlphaMissense.v2023.hg38 3.18.2 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## AlphaMissenseR 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AlpsNMR 4.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## altcdfenvs 2.72.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## alternativeSplicingEvents.hg19 1.1.0 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## alternativeSplicingEvents.hg38 1.1.0 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## amap 0.8-20 2024-10-21 [2] CRAN (R 4.5.1)
## AMARETTO 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ami 0.2.1 2024-11-15 [2] CRAN (R 4.5.1)
## AMOUNTAIN 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AmpAffyExample 1.50.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## analogue 0.18.1 2025-06-25 [2] CRAN (R 4.5.1)
## anansi 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Anaquin 2.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ANCOMBC 2.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AneuFinderData 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ANF 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## anglemania 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## animalcules 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## animation 2.8 2025-08-26 [2] CRAN (R 4.5.1)
## annaffy 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## anndata 0.8.0 2025-05-27 [2] CRAN (R 4.5.1)
## anndataR 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## annmap 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## annotate 1.88.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## annotation 1.33.1 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## AnnotationDbi 1.72.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AnnotationFilter 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AnnotationForge 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AnnotationHub 4.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AnnotationHubData 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## annotationTools 1.84.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## annotatr 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## anota 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## anota2seq 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## antiProfiles 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## antiProfilesData 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## AnVIL 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AnVILAz 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AnVILBase 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AnVILBilling 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AnVILGCP 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AnVILPublish 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AnVILWorkflow 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## anytime 0.3.12 2025-07-14 [2] CRAN (R 4.5.1)
## aod 1.3.3 2023-12-13 [2] CRAN (R 4.5.1)
## aods3 0.5 2024-11-06 [2] CRAN (R 4.5.1)
## APAlyzer 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## apcluster 1.4.14 2025-09-22 [2] CRAN (R 4.5.1)
## apComplex 2.76.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ape 5.8-1 2024-12-16 [2] CRAN (R 4.5.1)
## apeglm 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## APL 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## aplot 0.2.9 2025-09-12 [2] CRAN (R 4.5.1)
## appreci8R 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## aracne.networks 1.36.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## archive 1.1.12 2025-03-20 [2] CRAN (R 4.5.1)
## argparse 2.3.1 2025-10-08 [2] CRAN (R 4.5.1)
## argparser 0.7.2 2024-04-04 [2] CRAN (R 4.5.1)
## aricode 1.0.3 2023-10-20 [2] CRAN (R 4.5.1)
## arm 1.14-4 2024-04-01 [2] CRAN (R 4.5.1)
## aroma.affymetrix 3.2.3 2025-08-19 [2] CRAN (R 4.5.1)
## aroma.apd 0.7.1 2025-04-06 [2] CRAN (R 4.5.1)
## aroma.core 3.3.2 2025-08-18 [2] CRAN (R 4.5.1)
## aroma.light 3.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## arrangements 1.1.9 2020-09-13 [2] CRAN (R 4.5.1)
## ArrayExpress 1.70.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## arrayhelpers 1.1-0 2020-02-04 [2] CRAN (R 4.5.1)
## arrayMvout 1.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## arrayQuality 1.88.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## arrayQualityMetrics 3.66.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## arrays 1.35.0 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## ARRmData 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ARRmNormalization 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## arrow 22.0.0 2025-10-29 [2] CRAN (R 4.5.1)
## arsenal 3.6.3 2021-06-04 [2] CRAN (R 4.5.1)
## artMS 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## arules 1.7-11 2025-05-29 [2] CRAN (R 4.5.1)
## ASAFE 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ASEB 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ASGSCA 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ash 1.0-15 2015-09-01 [2] CRAN (R 4.5.1)
## AshkenazimSonChr21 1.40.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ashr 2.2-63 2023-08-21 [2] CRAN (R 4.5.1)
## ASICS 2.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ASICSdata 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## AsioHeaders 1.30.2-1 2025-04-15 [2] CRAN (R 4.5.1)
## askpass 1.2.1 2024-10-04 [2] CRAN (R 4.5.1)
## ASpli 2.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## assertr 3.0.1 2023-11-23 [2] CRAN (R 4.5.1)
## assertthat 0.2.1 2019-03-21 [2] CRAN (R 4.5.1)
## AssessORF 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AssessORFData 1.28.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ASSET 2.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ASSIGN 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## assorthead 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ASURAT 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ATACseqQC 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ATACseqTFEA 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## atena 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ath1121501cdf 2.18.0 2025-09-11 [2] Bioconductor
## atSNP 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## attempt 0.3.1 2020-05-03 [2] CRAN (R 4.5.1)
## attract 1.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AUCell 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## audio 0.1-11 2023-08-18 [2] CRAN (R 4.5.1)
## automap 1.1-20 2025-07-13 [2] CRAN (R 4.5.1)
## autonomics 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## autothresholdr 1.4.3 2025-09-26 [2] CRAN (R 4.5.1)
## av 0.9.6 2025-10-20 [2] CRAN (R 4.5.1)
## available 1.1.0 2022-07-10 [2] CRAN (R 4.5.1)
## AWAggregator 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AWAggregatorData 1.0.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## AWFisher 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## aws 2.5-6 2024-09-30 [2] CRAN (R 4.5.1)
## aws.s3 0.3.22 2025-08-19 [2] CRAN (R 4.5.1)
## aws.signature 0.6.0 2020-06-01 [2] CRAN (R 4.5.1)
## awsMethods 1.1-1 2019-05-08 [2] CRAN (R 4.5.1)
## awst 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## AzureAuth 1.3.3 2021-09-13 [2] CRAN (R 4.5.1)
## AzureGraph 1.3.5 2025-07-31 [2] CRAN (R 4.5.1)
## AzureRMR 2.4.5 2025-07-31 [2] CRAN (R 4.5.1)
## AzureStor 3.7.1 2025-08-25 [2] CRAN (R 4.5.1)
## BaalChIP 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## babelgene 22.9 2022-09-29 [2] CRAN (R 4.5.1)
## backbone 3.0.2 2025-10-06 [2] CRAN (R 4.5.1)
## backports 1.5.0 2024-05-23 [2] CRAN (R 4.5.1)
## bacon 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BADER 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## badger 0.2.5 2025-07-31 [2] CRAN (R 4.5.1)
## BadRegionFinder 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BAGS 2.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ballgown 2.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bambu 3.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bamlss 1.2-5 2024-10-11 [2] CRAN (R 4.5.1)
## BAMMtools 2.1.12 2024-09-12 [2] CRAN (R 4.5.1)
## bamsignals 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BANDITS 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bandle 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Banksy 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## banocc 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## barbieQ 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## barcodetrackR 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## base * 4.5.1 2025-09-10 [3] local
## base64 2.0.2 2024-10-04 [2] CRAN (R 4.5.1)
## base64enc 0.1-3 2015-07-28 [2] CRAN (R 4.5.1)
## base64url 1.4 2018-05-14 [2] CRAN (R 4.5.1)
## basecallQC 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## baseline 1.3-7 2025-06-18 [2] CRAN (R 4.5.1)
## BaseSpaceR 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Basic4Cseq 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BASiCS 2.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BASiCStan 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BasicSTARRseq 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## basilisk 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## basilisk.utils 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## batchCorr 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## batchelor 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BatchJobs 1.10 2025-09-10 [2] CRAN (R 4.5.1)
## BatchQC 2.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BatchSVG 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## batchtools 0.9.18 2025-08-20 [2] CRAN (R 4.5.1)
## bayesbio 1.0.0 2016-05-24 [2] CRAN (R 4.5.1)
## BayesKnockdown 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bayesm 3.1-6 2023-09-23 [2] CRAN (R 4.5.1)
## bayesplot 1.14.0 2025-08-31 [2] CRAN (R 4.5.1)
## BayesSpace 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bayestestR 0.17.0 2025-08-29 [2] CRAN (R 4.5.1)
## bayNorm 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## baySeq 2.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BB 2019.10-1 2019-10-18 [2] CRAN (R 4.5.1)
## BBCAnalyzer 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BBmisc 1.13 2022-09-29 [2] CRAN (R 4.5.1)
## bbmle 1.0.25.1 2023-12-09 [2] CRAN (R 4.5.1)
## bbotk 1.7.1 2025-10-24 [2] CRAN (R 4.5.1)
## bcellViper 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## BCRANK 1.72.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bcSeq 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bdsmatrix 1.3-7 2024-03-02 [2] CRAN (R 4.5.1)
## beachmat 2.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## beachmat.hdf5 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## beachmat.tiledb 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## beadarray 2.60.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## beadarrayExampleData 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## BeadArrayUseCases 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## BeadDataPackR 1.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BeadSorted.Saliva.EPIC 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## beanplot 1.3.1 2022-04-09 [2] CRAN (R 4.5.1)
## BEAT 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BEclear 2.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BEDASSLE 1.6.1 2024-01-11 [2] CRAN (R 4.5.1)
## bedbaser 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BEDMatrix 2.0.4 2024-09-06 [2] CRAN (R 4.5.1)
## beepr 2.0 2024-07-06 [2] CRAN (R 4.5.1)
## beer 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## beeswarm 0.4.0 2021-06-01 [2] CRAN (R 4.5.1)
## bench 1.1.4 2025-01-16 [2] CRAN (R 4.5.1)
## benchdamic 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## benchmarkme 1.0.8 2022-06-12 [2] CRAN (R 4.5.1)
## benchmarkmeData 1.0.4 2020-04-23 [2] CRAN (R 4.5.1)
## berryFunctions 1.22.13 2025-07-28 [2] CRAN (R 4.5.1)
## BERT 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bestNormalize 1.9.1 2023-08-18 [2] CRAN (R 4.5.1)
## beta7 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## betaHMM 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## betareg 3.2-4 2025-08-19 [2] CRAN (R 4.5.1)
## bettr 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bezier 1.1.2 2018-12-14 [2] CRAN (R 4.5.1)
## BG2 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BgeeCall 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BgeeDB 2.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bgx 1.76.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BH 1.87.0-1 2024-12-17 [2] CRAN (R 4.5.1)
## BiasedUrn 2.0.12 2024-06-16 [2] CRAN (R 4.5.1)
## BiBitR 0.3.1 2017-06-30 [2] CRAN (R 4.5.1)
## bibtex 0.5.1 2023-01-26 [2] CRAN (R 4.5.1)
## BicARE 1.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## biclust 2.0.3.1 2023-05-19 [2] CRAN (R 4.5.1)
## BiFET 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## biganalytics 1.1.22 2024-03-28 [2] CRAN (R 4.5.1)
## bigassertr 0.1.7 2025-06-27 [2] CRAN (R 4.5.1)
## bigD 0.3.1 2025-04-03 [2] CRAN (R 4.5.1)
## biglm 0.9-3 2024-06-12 [2] CRAN (R 4.5.1)
## bigmelon 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bigmemory 4.6.4 2024-01-09 [2] CRAN (R 4.5.1)
## bigmemory.sri 0.1.8 2024-01-10 [2] CRAN (R 4.5.1)
## bigparallelr 0.3.2 2021-10-02 [2] CRAN (R 4.5.1)
## bigreadr 0.2.5 2022-12-06 [2] CRAN (R 4.5.1)
## bigrquery 1.6.1 2025-09-10 [2] CRAN (R 4.5.1)
## bigsnpr 1.12.21 2025-08-21 [2] CRAN (R 4.5.1)
## bigsparser 0.7.3 2024-09-06 [2] CRAN (R 4.5.1)
## bigstatsr 1.6.2 2025-07-29 [2] CRAN (R 4.5.1)
## bigutilsr 0.3.11 2025-07-30 [2] CRAN (R 4.5.1)
## billboarder 0.5.0 2024-09-09 [2] CRAN (R 4.5.1)
## BindingSiteFinder 2.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## binom 1.1-1.1 2022-05-02 [2] CRAN (R 4.5.1)
## binr 1.1.1 2022-06-26 [2] CRAN (R 4.5.1)
## bio3d 2.4-5 2024-10-29 [2] CRAN (R 4.5.1)
## bioassayR 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Biobase 2.70.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## biobroom 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## biobtreeR 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Bioc.gff 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bioCancer 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BioCartaImage 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BiocBaseUtils 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BiocBook 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BiocBookDemo 1.8.0 2025-11-03 [1] Bioconductor 3.22 (R 4.5.1)
## BiocCheck 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BiocFHIR 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BiocFileCache 3.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BiocGenerics 0.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## biocGraph 1.72.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BiocHail 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BiocHubsShiny 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BiocIO 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## biocmake 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BiocManager 1.30.26 2025-06-05 [2] CRAN (R 4.5.1)
## BiocNeighbors 2.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BioCor 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BiocParallel 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BiocPkgTools 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## biocroxytest 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BiocSet 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BiocSingular 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BiocSklearn 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BiocStyle 2.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## biocthis 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BiocVersion 3.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## biocViews 1.78.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BiocWorkflowTools 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## biodb 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## biodbChebi 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## biodbHmdb 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## biodbNcbi 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## biodbNci 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## biodbUniprot 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bioDist 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BioGA 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BioImageDbs 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## biomaRt 2.66.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BioMartGOGeneSets 0.99.11 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## biomartr 1.0.7 2023-12-02 [2] CRAN (R 4.5.1)
## biomformat 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BioMVCClass 1.78.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## biomvRCNS 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BioNAR 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BioNERO 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BioNet 1.70.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bionetdata 1.1 2022-09-12 [2] CRAN (R 4.5.1)
## BioPlex 1.16.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## BioQC 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bioseq 0.1.5 2025-09-29 [2] CRAN (R 4.5.1)
## biosigner 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Biostrings 2.78.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BioTIP 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## biotmle 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## biotmleData 1.34.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## biovizBase 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BiRewire 3.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## biscuiteer 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## biscuiteerData 1.24.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## BiSeq 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bit 4.6.0 2025-03-06 [2] CRAN (R 4.5.1)
## bit64 4.6.0-1 2025-01-16 [2] CRAN (R 4.5.1)
## bitops 1.0-9 2024-10-03 [2] CRAN (R 4.5.1)
## biwt 1.0.1 2022-06-13 [2] CRAN (R 4.5.1)
## blacksheepr 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bladderbatch 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## BlandAltmanLeh 0.3.1 2015-12-23 [2] CRAN (R 4.5.1)
## blase 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## blaster 1.0.7 2023-08-22 [2] CRAN (R 4.5.1)
## blastula 0.3.6 2025-04-03 [2] CRAN (R 4.5.1)
## blima 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## blimaTestingData 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## BLMA 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## blme 1.0-6 2024-09-07 [2] CRAN (R 4.5.1)
## blob 1.2.4 2023-03-17 [2] CRAN (R 4.5.1)
## blockmodeling 1.1.8 2025-07-25 [2] CRAN (R 4.5.1)
## BloodCancerMultiOmics2017 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## BloodGen3Module 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bluster 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BMA 3.18.20 2025-01-11 [2] CRAN (R 4.5.1)
## bmp 0.3.1 2025-09-22 [2] CRAN (R 4.5.1)
## bnbc 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bnem 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bnlearn 5.1 2025-08-20 [2] CRAN (R 4.5.1)
## bnstruct 1.0.15 2024-01-09 [2] CRAN (R 4.5.1)
## bnviewer 0.1.6 2020-09-14 [2] CRAN (R 4.5.1)
## BOBaFIT 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bodymapRat 1.26.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## bookdown 0.45 2025-10-03 [2] CRAN (R 4.5.1)
## BoolNet 2.1.9 2023-10-02 [2] CRAN (R 4.5.1)
## boot 1.3-32 2025-08-29 [3] CRAN (R 4.5.1)
## bootstrap 2019.6 2019-06-17 [2] CRAN (R 4.5.1)
## borealis 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BoutrosLab.plotting.general 7.1.2 2024-10-04 [2] CRAN (R 4.5.1)
## BP4RNAseq 1.19.0 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## BPRMeth 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BRAIN 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## branchpointer 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bread 0.4.1 2023-06-26 [2] CRAN (R 4.5.1)
## breakaway 4.8.4 2022-11-22 [2] CRAN (R 4.5.1)
## breakpointR 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## breakpointRdata 1.28.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## breastCancerMAINZ 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## breastCancerNKI 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## breastCancerTRANSBIG 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## breastCancerUNT 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## breastCancerUPP 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## breastCancerVDX 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## BreastSubtypeR 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## brendaDb 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## brew 1.0-10 2023-12-16 [2] CRAN (R 4.5.1)
## BREW3R.r 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## brgedata 1.32.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## brglm 0.7.3 2025-09-16 [2] CRAN (R 4.5.1)
## BridgeDbR 2.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## brio 1.1.5 2024-04-24 [2] CRAN (R 4.5.1)
## BRISC 1.0.6 2024-10-02 [2] CRAN (R 4.5.1)
## broadSeq 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## broman 0.90 2025-10-10 [2] CRAN (R 4.5.1)
## bronchialIL13 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## broom 1.0.10 2025-09-13 [2] CRAN (R 4.5.1)
## broom.mixed 0.2.9.6 2024-10-15 [2] CRAN (R 4.5.1)
## BrowserViz 2.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bs4Dash 2.3.5 2025-08-25 [2] CRAN (R 4.5.1)
## BSDA 1.2.2 2023-09-18 [2] CRAN (R 4.5.1)
## BSgenome 1.78.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BSgenome.Athaliana.TAIR.TAIR9 1.3.1000 2025-09-10 [2] Bioconductor
## BSgenome.Btaurus.UCSC.bosTau6 1.4.0 2025-09-10 [2] Bioconductor
## BSgenome.Btaurus.UCSC.bosTau6.masked 1.3.99 2025-09-10 [2] Bioconductor
## BSgenome.Celegans.UCSC.ce10 1.4.0 2025-09-10 [2] Bioconductor
## BSgenome.Celegans.UCSC.ce11 1.4.2 2025-09-10 [2] Bioconductor
## BSgenome.Celegans.UCSC.ce2 1.4.0 2025-09-10 [2] Bioconductor
## BSgenome.Dmelanogaster.UCSC.dm3 1.4.0 2025-09-10 [2] Bioconductor
## BSgenome.Dmelanogaster.UCSC.dm6 1.4.1 2025-09-10 [2] Bioconductor
## BSgenome.Drerio.UCSC.danRer10 1.4.2 2025-09-10 [2] Bioconductor
## BSgenome.Drerio.UCSC.danRer7 1.4.0 2025-09-10 [2] Bioconductor
## BSgenome.Ecoli.NCBI.20080805 1.3.1000 2025-09-10 [2] Bioconductor
## BSgenome.Ggallus.UCSC.galGal3 1.4.0 2025-09-10 [2] Bioconductor
## BSgenome.Hsapiens.1000genomes.hs37d5 0.99.1 2025-09-10 [2] Bioconductor
## BSgenome.Hsapiens.NCBI.GRCh38 1.3.1000 2025-09-10 [2] Bioconductor
## BSgenome.Hsapiens.UCSC.hg18 1.3.1000 2025-09-10 [2] Bioconductor
## BSgenome.Hsapiens.UCSC.hg18.masked 1.3.99 2025-09-10 [2] Bioconductor
## BSgenome.Hsapiens.UCSC.hg19 1.4.3 2025-09-10 [2] Bioconductor
## BSgenome.Hsapiens.UCSC.hg19.masked 1.3.993 2025-09-10 [2] Bioconductor
## BSgenome.Hsapiens.UCSC.hg38 1.4.5 2025-09-10 [2] Bioconductor
## BSgenome.Hsapiens.UCSC.hg38.masked 1.4.5 2025-09-10 [2] Bioconductor
## BSgenome.Mmulatta.UCSC.rheMac10 1.4.2 2025-09-10 [2] Bioconductor
## BSgenome.Mmusculus.UCSC.mm10 1.4.3 2025-09-10 [2] Bioconductor
## BSgenome.Mmusculus.UCSC.mm10.masked 1.4.3 2025-09-10 [2] Bioconductor
## BSgenome.Mmusculus.UCSC.mm39 1.4.3 2025-09-10 [2] Bioconductor
## BSgenome.Mmusculus.UCSC.mm8 1.4.0 2025-09-10 [2] Bioconductor
## BSgenome.Mmusculus.UCSC.mm8.masked 1.3.99 2025-09-10 [2] Bioconductor
## BSgenome.Mmusculus.UCSC.mm9 1.4.0 2025-09-10 [2] Bioconductor
## BSgenome.Mmusculus.UCSC.mm9.masked 1.3.99 2025-09-10 [2] Bioconductor
## BSgenome.Rnorvegicus.UCSC.rn4 1.4.0 2025-09-10 [2] Bioconductor
## BSgenome.Rnorvegicus.UCSC.rn5 1.4.0 2025-09-10 [2] Bioconductor
## BSgenome.Rnorvegicus.UCSC.rn5.masked 1.3.99 2025-09-10 [2] Bioconductor
## BSgenome.Rnorvegicus.UCSC.rn6 1.4.1 2025-09-10 [2] Bioconductor
## BSgenome.Rnorvegicus.UCSC.rn7 1.4.3 2025-09-10 [2] Bioconductor
## BSgenome.Scerevisiae.UCSC.sacCer1 1.4.0 2025-09-10 [2] Bioconductor
## BSgenome.Scerevisiae.UCSC.sacCer2 1.4.0 2025-09-10 [2] Bioconductor
## BSgenome.Scerevisiae.UCSC.sacCer3 1.4.0 2025-09-10 [2] Bioconductor
## BSgenomeForge 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bsicons 0.1.2 2023-11-04 [2] CRAN (R 4.5.1)
## bslib 0.9.0 2025-01-30 [2] CRAN (R 4.5.1)
## bsplus 0.1.5 2025-04-06 [2] CRAN (R 4.5.1)
## bsseq 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bsseqData 0.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## bst 0.3-24 2023-01-06 [2] CRAN (R 4.5.1)
## BubbleTree 2.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BufferedMatrix 1.74.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BufferedMatrixMethods 1.74.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bugphyzz 1.4.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## bugsigdbr 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BulkSignalR 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BUMHMM 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## bumphunter 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BumpyMatrix 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BUS 1.66.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BUScorrect 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BUSpaRse 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## BUSseq 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## butcher 0.3.6 2025-08-18 [2] CRAN (R 4.5.1)
## BWStest 0.2.3 2023-10-10 [2] CRAN (R 4.5.1)
## c3net 1.1.1.1 2022-06-24 [2] CRAN (R 4.5.1)
## C50 0.2.0 2025-04-03 [2] CRAN (R 4.5.1)
## ca 0.71.1 2020-01-24 [2] CRAN (R 4.5.1)
## cachem 1.1.0 2024-05-16 [2] CRAN (R 4.5.1)
## cadd.v1.6.hg19 3.18.1 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## cadd.v1.6.hg38 3.18.1 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## CaDrA 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CAEN 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CAFE 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CAGEfightR 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cageminer 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CAGEr 2.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CAGEWorkflow 1.25.0 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## Cairo 1.7-0 2025-10-29 [2] CRAN (R 4.5.1)
## CalibraCurve 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## calibrate 1.7.7 2020-06-19 [2] CRAN (R 4.5.1)
## callr 3.7.6 2024-03-25 [2] CRAN (R 4.5.1)
## calm 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CAMERA 1.66.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CaMutQC 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## canceR 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cancerclass 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cancerdata 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## capushe 1.1.3 2025-09-10 [2] CRAN (R 4.5.1)
## car 3.1-3 2024-09-27 [2] CRAN (R 4.5.1)
## carData 3.0-5 2022-01-06 [2] CRAN (R 4.5.1)
## cardelino 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Cardinal 3.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CardinalIO 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CardinalWorkflows 1.42.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## CARDspa 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## caret 7.0-1 2024-12-10 [2] CRAN (R 4.5.1)
## caretEnsemble 4.0.1 2024-09-12 [2] CRAN (R 4.5.1)
## CARNIVAL 2.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## casper 2.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CATALYST 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## catdata 1.2.4 2024-01-25 [2] CRAN (R 4.5.1)
## Category 2.76.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## categoryCompare 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CatEncoders 0.1.1 2017-03-08 [2] CRAN (R 4.5.1)
## caTools 1.18.3 2024-09-04 [2] CRAN (R 4.5.1)
## CatsCradle 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CATT 2.0 2017-05-19 [2] CRAN (R 4.5.1)
## CausalR 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cba 0.2-25 2024-08-16 [2] CRAN (R 4.5.1)
## cbaf 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cBioPortalData 2.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CBN2Path 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CBNplot 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cbpManager 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CCAFE 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ccaPP 0.3.5 2025-10-02 [2] CRAN (R 4.5.1)
## ccdata 1.36.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ccfindR 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ccImpute 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CCl4 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ccmap 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CCP 1.2 2022-04-21 [2] CRAN (R 4.5.1)
## CCPlotR 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CCPROMISE 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ccrepe 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ccTensor 1.0.3 2025-08-25 [2] CRAN (R 4.5.1)
## CDFt 1.2 2021-02-18 [2] CRAN (R 4.5.1)
## CDI 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CDM 8.3-14 2025-07-13 [2] CRAN (R 4.5.1)
## celaref 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## celarefData 1.28.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## celda 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## celestial 1.5.8 2025-09-02 [2] CRAN (R 4.5.1)
## CellBarcode 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cellbaseR 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CellBench 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## celldex 1.20.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## CelliD 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cellity 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CellMapper 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CellMapperData 1.36.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## cellmig 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cellmigRation 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CellMixS 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CellNOptR 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cellranger 1.1.0 2016-07-27 [2] CRAN (R 4.5.1)
## cellscape 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CellScore 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CellTrails 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cellxgenedp 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CEMiTool 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## censcyt 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CENTREannotation 0.99.1 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## CENTREprecomputed 1.0.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## Cepo 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ceRNAnetsim 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CeTF 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CexoR 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CFAssay 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cfdnakit 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cfDNAPro 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cfTools 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cfToolsData 1.8.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## CGEN 3.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CGHbase 1.70.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CGHcall 2.72.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cghMCR 1.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CGHnormaliter 1.64.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CGHregions 1.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ChAMP 2.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ChAMPdata 2.42.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## changepoint 2.3 2024-11-04 [2] CRAN (R 4.5.1)
## changepoint.np 1.0.5 2022-10-20 [2] CRAN (R 4.5.1)
## checkmate 2.3.3 2025-08-18 [2] CRAN (R 4.5.1)
## ChemmineDrugs 1.0.2 2025-09-10 [2] Bioconductor
## ChemmineOB 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ChemmineR 3.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## chemometrics 1.4.4 2023-08-25 [2] CRAN (R 4.5.1)
## ChemoSpec 6.3.1 2025-09-09 [2] CRAN (R 4.5.1)
## ChemoSpecUtils 1.0.5 2025-04-12 [2] CRAN (R 4.5.1)
## CHETAH 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## chevreulPlot 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## chevreulProcess 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## chevreulShiny 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Chicago 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## chihaya 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## chimeraviz 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ChimpHumanBrainData 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ChIPanalyser 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ChIPComp 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ChIPDBData 1.0.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## chipenrich 2.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## chipenrich.data 2.34.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ChIPexoQual 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ChIPexoQualExample 1.34.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ChIPpeakAnno 3.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ChIPseeker 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## chipseq 1.60.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## chipseqDB 1.33.0 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## chipseqDBData 1.26.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ChIPseqR 1.64.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ChIPsim 1.64.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ChIPXpress 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ChIPXpressData 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## chk 0.10.0 2025-01-24 [2] CRAN (R 4.5.1)
## chopsticks 1.76.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Chromatograms 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## chromDraw 2.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ChromHeatMap 1.64.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## chromhmmData 0.99.2 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## chromote 0.5.1 2025-04-24 [2] CRAN (R 4.5.1)
## chromPlot 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ChromSCape 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## chromstaRData 1.36.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## chromVAR 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## chron 2.3-62 2024-12-31 [2] CRAN (R 4.5.1)
## CHRONOS 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cicero 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cicerone 1.0.4 2021-01-10 [2] CRAN (R 4.5.1)
## cigarillo 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CIMICE 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CINdex 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## circlize 0.4.16 2024-02-20 [2] CRAN (R 4.5.1)
## circRNAprofiler 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CircSeqAlignTk 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CircStats 0.2-7 2025-06-19 [2] CRAN (R 4.5.1)
## circular 0.5-2 2025-09-25 [2] CRAN (R 4.5.1)
## CiteFuse 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Ckmeans.1d.dp 4.3.5 2023-08-19 [2] CRAN (R 4.5.1)
## class 7.3-23 2025-01-01 [3] CRAN (R 4.5.1)
## ClassifyR 3.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## classInt 0.4-11 2025-01-08 [2] CRAN (R 4.5.1)
## cleanUpdTSeq 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CleanUpRNAseq 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cleaver 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## clevr 0.1.2 2023-09-16 [2] CRAN (R 4.5.1)
## clevRvis 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cli 3.6.5 2025-04-23 [2] CRAN (R 4.5.1)
## clinfun 1.1.5 2023-10-19 [2] CRAN (R 4.5.1)
## clippda 1.60.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## clipper 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## clipr 0.8.0 2022-02-22 [2] CRAN (R 4.5.1)
## cliProfiler 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cliqueMS 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## clisymbols 1.2.0 2017-05-21 [2] CRAN (R 4.5.1)
## CLL 1.50.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## CLLmethylation 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## clock 0.7.3 2025-03-21 [2] CRAN (R 4.5.1)
## Clomial 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## clst 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## clstutils 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## clue 0.3-66 2024-11-13 [2] CRAN (R 4.5.1)
## ClueR 1.4.2 2023-11-15 [2] CRAN (R 4.5.1)
## CluMSID 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CluMSIDdata 1.26.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ClustAll 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## clustComp 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cluster 2.1.8.1 2025-03-12 [3] CRAN (R 4.5.1)
## clusterCrit 1.3.0 2023-11-23 [2] CRAN (R 4.5.1)
## clusterExperiment 2.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ClusterFoldSimilarity 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## clusterGeneration 1.3.8 2023-08-16 [2] CRAN (R 4.5.1)
## ClusterJudge 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## clusterProfiler 4.18.1 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ClusterR 1.3.5 2025-10-18 [2] CRAN (R 4.5.1)
## clusterRepro 0.9 2018-10-15 [2] CRAN (R 4.5.1)
## clusterSeq 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ClusterSignificance 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## clusterStab 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## clustifyr 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## clustifyrdatahub 1.20.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ClustIRR 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## clustree 0.5.1 2023-11-05 [2] CRAN (R 4.5.1)
## clustSIGNAL 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## clustvarsel 2.3.5 2025-04-02 [2] CRAN (R 4.5.1)
## clValid 0.7 2021-02-14 [2] CRAN (R 4.5.1)
## CMA 1.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cMAP 1.15.1 2025-09-10 [2] local
## cMap2data 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## cmapR 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cmdfun 1.0.2 2020-10-10 [2] CRAN (R 4.5.1)
## cmprsk 2.2-12 2024-05-19 [2] CRAN (R 4.5.1)
## cn.farms 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cn.mops 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CNAnorm 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CNEr 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CNORdt 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CNORfeeder 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CNORfuzzy 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CNORode 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CNTools 1.66.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CNVfilteR 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cnvGSA 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cnvGSAdata 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## CNViz 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CNVMetrics 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CNVPanelizer 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CNVRanger 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CNVrd2 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cobalt 4.6.1 2025-08-20 [2] CRAN (R 4.5.1)
## cobs 1.3-9-1 2025-07-02 [2] CRAN (R 4.5.1)
## CoCiteStats 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## COCOA 2.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## coda 0.19-4.1 2024-01-31 [2] CRAN (R 4.5.1)
## CodeDepends 0.6.6 2024-04-07 [2] CRAN (R 4.5.1)
## codelink 1.78.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## codetools 0.2-20 2024-03-31 [3] CRAN (R 4.5.1)
## CODEX 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## codingMatrices 0.4.0 2023-02-01 [2] CRAN (R 4.5.1)
## CoGAPS 3.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cogena 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cogeqc 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Cogito 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## coGPS 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## COHCAPanno 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## coin 1.4-3 2023-09-27 [2] CRAN (R 4.5.1)
## cola 2.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## collapse 2.1.4 2025-10-24 [2] CRAN (R 4.5.1)
## collections 0.3.9 2025-08-18 [2] CRAN (R 4.5.1)
## colonCA 1.52.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## colorBlindness 0.1.9 2021-04-17 [2] CRAN (R 4.5.1)
## colorRamp2 0.1.0 2022-12-21 [2] CRAN (R 4.5.1)
## colorRamps 2.3.4 2024-03-07 [2] CRAN (R 4.5.1)
## colorspace 2.1-2 2025-09-22 [2] CRAN (R 4.5.1)
## colourpicker 1.3.0 2023-08-21 [2] CRAN (R 4.5.1)
## colourvalues 0.3.9 2023-04-11 [2] CRAN (R 4.5.1)
## cols4all 0.10 2025-10-27 [2] CRAN (R 4.5.1)
## comapr 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## combi 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## combinat 0.0-8 2012-10-29 [2] CRAN (R 4.5.1)
## coMethDMR 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## common 1.1.3 2024-04-05 [2] CRAN (R 4.5.1)
## commonmark 2.0.0 2025-07-07 [2] CRAN (R 4.5.1)
## compareGroups 4.10.1 2025-10-29 [2] CRAN (R 4.5.1)
## COMPASS 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## compcodeR 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## compEpiTools 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## compiler 4.5.1 2025-09-10 [3] local
## ComplexHeatmap 2.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ComplexUpset 1.3.3 2021-12-11 [2] CRAN (R 4.5.1)
## COMPoissonReg 0.8.1 2023-11-29 [2] CRAN (R 4.5.1)
## compositions 2.0-9 2025-08-21 [2] CRAN (R 4.5.1)
## CompoundDb 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CompQuadForm 1.4.4 2025-07-13 [2] CRAN (R 4.5.1)
## ComPrAn 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## comprehenr 0.6.10 2021-01-31 [2] CRAN (R 4.5.1)
## compSPOT 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## concaveman 1.2.0 2025-10-06 [2] CRAN (R 4.5.1)
## concordexR 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## condformat 0.10.1 2023-10-08 [2] CRAN (R 4.5.1)
## condiments 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CONFESS 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CONFESSdata 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## config 0.3.2 2023-08-30 [2] CRAN (R 4.5.1)
## configr 0.3.5 2020-07-17 [2] CRAN (R 4.5.1)
## confintr 1.0.2 2023-06-04 [2] CRAN (R 4.5.1)
## conflicted 1.2.0 2023-02-01 [2] CRAN (R 4.5.1)
## conicfit 1.0.4 2015-10-05 [2] CRAN (R 4.5.1)
## ConnectivityMap 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## consensus 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ConsensusClusterPlus 1.74.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## consensusDE 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## consensusOV 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## consensusSeekeR 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## consICA 2.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ConsRank 2.1.5 2025-04-15 [2] CRAN (R 4.5.1)
## CONSTANd 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## contrast 0.24.2 2022-10-05 [2] CRAN (R 4.5.1)
## conumee 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## convert 1.86.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CooccurrenceAffinity 1.0.2 2025-06-27 [2] CRAN (R 4.5.1)
## coop 0.6-3 2021-09-19 [2] CRAN (R 4.5.1)
## copa 1.78.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## COPDSexualDimorphism.data 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## copula 1.1-6 2025-03-18 [2] CRAN (R 4.5.1)
## CopyhelpeR 1.42.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## CopyNeutralIMA 1.28.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## CopyNumberPlots 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Coralysis 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## coRdon 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CoreGx 2.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Cormotif 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## corncob 0.4.2 2025-03-29 [2] CRAN (R 4.5.1)
## coro 1.1.0 2024-11-05 [2] CRAN (R 4.5.1)
## corpcor 1.6.10 2021-09-16 [2] CRAN (R 4.5.1)
## corral 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## corrgram 1.14 2021-04-29 [2] CRAN (R 4.5.1)
## corrplot 0.95 2024-10-14 [2] CRAN (R 4.5.1)
## coseq 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CoSIA 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CoSIAdata 1.10.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## COSMIC.67 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## cosmiq 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cosmosR 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## COSNet 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## COTAN 2.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## countrycode 1.6.1 2025-03-31 [2] CRAN (R 4.5.1)
## countsimQC 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## covEB 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CoverageView 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## covr 3.6.4 2023-11-09 [2] CRAN (R 4.5.1)
## covRNA 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cowplot 1.2.0 2025-07-07 [2] CRAN (R 4.5.1)
## coxme 2.2-22 2024-08-23 [2] CRAN (R 4.5.1)
## coxrobust 1.0.2 2025-08-18 [2] CRAN (R 4.5.1)
## cp4p 0.3.6 2019-02-24 [2] CRAN (R 4.5.1)
## cplm 0.7-12.1 2024-09-21 [2] CRAN (R 4.5.1)
## cpp11 0.5.2 2025-03-03 [2] CRAN (R 4.5.1)
## CPSM 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cpvSNP 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cqn 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cramer 0.9-4 2024-02-05 [2] CRAN (R 4.5.1)
## crayon 1.5.3 2024-06-20 [2] CRAN (R 4.5.1)
## CRCL18 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## credentials 2.0.3 2025-09-12 [2] CRAN (R 4.5.1)
## crew 1.3.0 2025-09-13 [2] CRAN (R 4.5.1)
## CRImage 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CRISPRball 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## crisprBase 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## crisprBowtie 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## crisprBwa 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## crisprDesign 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## crisprScore 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## crisprScoreData 1.14.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## CRISPRseek 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## crisprShiny 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CrispRVariants 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## crisprVerse 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## crisprViz 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## crlmm 1.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## crmn 0.0.21 2020-02-10 [2] CRAN (R 4.5.1)
## crochet 2.3.0 2020-05-20 [2] CRAN (R 4.5.1)
## crosstalk 1.2.2 2025-08-26 [2] CRAN (R 4.5.1)
## crul 1.6.0 2025-07-23 [2] CRAN (R 4.5.1)
## crumblr 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## crupR 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CSAR 1.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## csaw 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## csawBook 1.18.0 2025-11-03 [2] Bioconductor 3.22 (R 4.5.1)
## csawUsersGuide 1.25.0 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## csdR 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CSOA 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CSSQ 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ctc 1.84.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CTCF 0.99.12 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## CTdata 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CTDquerier 2.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CTexploreR 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cTRAP 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ctsGE 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CTSV 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cubature 2.1.4 2025-06-02 [2] CRAN (R 4.5.1)
## Cubist 0.5.1 2025-10-25 [2] CRAN (R 4.5.1)
## cummeRbund 2.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## curatedAdipoArray 1.22.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## curatedAdipoChIP 1.26.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## curatedAdipoRNA 1.26.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## CuratedAtlasQueryR 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## curatedBladderData 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## curatedBreastData 2.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## curatedCRCData 2.42.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## curatedMetagenomicData 3.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## curatedOvarianData 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## curatedPCaData 1.6.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## curatedTBData 2.6.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## curatedTCGAData 1.32.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## curl 7.0.0 2025-08-19 [2] CRAN (R 4.5.1)
## customCMPdb 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## customProDB 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cvar 0.5 2022-11-03 [2] CRAN (R 4.5.1)
## cvAUC 1.1.4 2022-01-17 [2] CRAN (R 4.5.1)
## cvms 1.8.1 2025-08-24 [2] CRAN (R 4.5.1)
## cvTools 0.3.3 2024-03-13 [2] CRAN (R 4.5.1)
## CVXR 1.0-15 2024-11-07 [2] CRAN (R 4.5.1)
## cyanoFilter 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cycle 1.64.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cydar 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cypress 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CytoDx 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CyTOFpower 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cytofWorkflow 1.33.0 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## CytoGLMM 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cytoKernel 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cytolib 2.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cytomapper 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CytoMDS 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cytoMEM 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CytoMethIC 1.6.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## cytometree 2.0.6 2025-07-24 [2] CRAN (R 4.5.1)
## CytoML 2.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CytoPipeline 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## CytoPipelineGUI 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## cytoviewer 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## dada2 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## dagLogo 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## daMA 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DAMEfinder 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DaMiRseq 2.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Damsel 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## dandelionR 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DAPAR 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DAPARdata 1.40.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## dar 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DART 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## dashboardthemes 1.1.6 2022-07-13 [2] CRAN (R 4.5.1)
## data.table 1.17.8 2025-07-10 [2] CRAN (R 4.5.1)
## data.tree 1.2.0 2025-08-25 [2] CRAN (R 4.5.1)
## DataEditR 0.1.5 2022-03-08 [2] CRAN (R 4.5.1)
## datamods 1.5.3 2024-10-02 [2] CRAN (R 4.5.1)
## datasets * 4.5.1 2025-09-10 [3] local
## DataVisualizations 1.4.0 2025-10-31 [2] CRAN (R 4.5.1)
## datawizard 1.3.0 2025-10-11 [2] CRAN (R 4.5.1)
## davidTiling 1.50.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## DBI 1.2.3 2024-06-02 [2] CRAN (R 4.5.1)
## dbplyr 2.5.1 2025-09-10 [2] CRAN (R 4.5.1)
## dbscan 1.2.3 2025-08-20 [2] CRAN (R 4.5.1)
## dcanr 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DCATS 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## dcGSA 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ddCt 1.66.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ddPCRclust 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DDRTree 0.1.5 2017-04-30 [2] CRAN (R 4.5.1)
## dearseq 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## debrowser 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## debugme 1.2.0 2024-04-25 [2] CRAN (R 4.5.1)
## DECIPHER 3.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## decompTumor2Sig 2.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DeconRNASeq 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## decontam 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## decontX 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DeconvoBuddies 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## deconvR 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## decor 1.0.2 2023-07-01 [2] CRAN (R 4.5.1)
## decoupleR 2.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DeeDeeExperiment 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DeepPINCS 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## deepSNV 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DeepTarget 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DEFormats 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DegCre 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DegNorm 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DEGraph 1.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DEGreport 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DEGseq 1.64.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Delaporte 8.4.2 2025-07-17 [2] CRAN (R 4.5.1)
## DelayedArray 0.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DelayedDataFrame 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DelayedMatrixStats 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DelayedRandomArray 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DelayedTensor 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## deldir 2.0-4 2024-02-28 [2] CRAN (R 4.5.1)
## DELocal 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## deltaCaptureC 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## deltaGseg 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DeMAND 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## deming 1.4-1 2024-06-26 [2] CRAN (R 4.5.1)
## DeMixT 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## demuxmix 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## demuxSNP 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## dendextend 1.19.1 2025-07-15 [2] CRAN (R 4.5.1)
## dendsort 0.3.4 2021-04-20 [2] CRAN (R 4.5.1)
## densEstBayes 1.0-2.2 2023-03-31 [2] CRAN (R 4.5.1)
## densvis 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DEoptim 2.2-8 2022-11-11 [2] CRAN (R 4.5.1)
## DEoptimR 1.1-4 2025-07-27 [2] CRAN (R 4.5.1)
## DEP 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DepecheR 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DepInfeR 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## depmap 1.24.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## depmixS4 1.5-1 2025-05-11 [2] CRAN (R 4.5.1)
## DEqMS 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## derfinder 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## derfinderData 2.28.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## derfinderHelper 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## derfinderPlot 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Deriv 4.2.0 2025-06-20 [2] CRAN (R 4.5.1)
## desc 1.4.3 2023-12-10 [2] CRAN (R 4.5.1)
## DEScan2 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DescTools 0.99.60 2025-03-28 [2] CRAN (R 4.5.1)
## DESeq2 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DEsingle 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## deSolve 1.40 2023-11-27 [2] CRAN (R 4.5.1)
## DeSousa2013 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## DESpace 2.2.1 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## destiny 3.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DEsubs 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## detectseparation 0.3 2022-08-26 [2] CRAN (R 4.5.1)
## devEMF 4.5-1 2025-03-24 [2] CRAN (R 4.5.1)
## devtools 2.4.6 2025-10-03 [2] CRAN (R 4.5.1)
## DEWSeq 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DExMA 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DExMAdata 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## DEXSeq 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DFP 1.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DFplyr 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DGEobj 1.1.2 2022-05-16 [2] CRAN (R 4.5.1)
## DGEobj.utils 1.0.6 2022-05-19 [2] CRAN (R 4.5.1)
## dgof 1.5.1 2024-10-09 [2] CRAN (R 4.5.1)
## diagram 1.6.5 2020-09-30 [2] CRAN (R 4.5.1)
## DiagrammeR 1.0.11 2024-02-02 [2] CRAN (R 4.5.1)
## DiceKriging 1.6.1 2025-10-21 [2] CRAN (R 4.5.1)
## diceR 3.1.0 2025-06-19 [2] CRAN (R 4.5.1)
## dichromat 2.0-0.1 2022-05-02 [2] CRAN (R 4.5.1)
## DiffBind 3.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## diffcoexp 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DiffCorr 0.4.5 2025-06-08 [2] CRAN (R 4.5.1)
## diffcyt 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DifferentialRegulation 2.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## diffGeneAnalysis 1.92.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## diffHic 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DiffLogo 2.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## diffloopdata 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## diffobj 0.3.6 2025-04-21 [2] CRAN (R 4.5.1)
## diffuStats 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## diffUTR 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## diffviewer 0.1.2 2024-06-12 [2] CRAN (R 4.5.1)
## digest 0.6.37 2024-08-19 [2] CRAN (R 4.5.1)
## diggit 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## diggitdata 1.42.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## Dino 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## dinoR 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## diptest 0.77-2 2025-08-20 [2] CRAN (R 4.5.1)
## dir.expiry 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## directlabels 2025.6.24 2025-06-24 [2] CRAN (R 4.5.1)
## directPA 1.5.1 2023-11-16 [2] CRAN (R 4.5.1)
## DirichletMultinomial 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DirichletReg 0.7-2 2025-05-31 [2] CRAN (R 4.5.1)
## dirmult 0.1.3-5 2022-03-21 [2] CRAN (R 4.5.1)
## discordant 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DiscoRhythm 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## distances 0.1.12 2025-04-01 [2] CRAN (R 4.5.1)
## distill 1.6 2023-10-06 [2] CRAN (R 4.5.1)
## distillery 1.2-2 2024-11-28 [2] CRAN (R 4.5.1)
## distinct 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## distr 2.9.7 2025-01-12 [2] CRAN (R 4.5.1)
## distributional 0.5.0 2024-09-17 [2] CRAN (R 4.5.1)
## distributions3 0.2.3 2025-09-12 [2] CRAN (R 4.5.1)
## dittoSeq 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## divergence 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## dixonTest 1.0.4 2022-08-22 [2] CRAN (R 4.5.1)
## dks 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DLBCL 1.50.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## dlstats 0.1.7 2023-05-24 [2] CRAN (R 4.5.1)
## DMCFB 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DMCHMM 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## dmGsea 1.0.1 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## dml 1.1.0 2015-08-29 [2] CRAN (R 4.5.1)
## DMRcaller 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DMRcate 3.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DMRcatedata 2.28.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## DMRScan 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## dmrseq 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DNABarcodeCompatibility 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DNABarcodes 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DNAcopy 1.84.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DNAcycP2 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DNAfusion 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DNAshapeR 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DNAZooData 1.10.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## DNEA 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DO.db 2.9 2025-09-10 [2] Bioconductor
## doBy 4.7.0 2025-06-29 [2] CRAN (R 4.5.1)
## docopt 0.7.2 2025-03-25 [2] CRAN (R 4.5.1)
## doFuture 1.1.2 2025-07-14 [2] CRAN (R 4.5.1)
## doMC 1.3.8 2022-02-05 [2] CRAN (R 4.5.1)
## DominoEffect 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## dominoSignal 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DonaPLLP2013 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## doParallel 1.0.17 2022-02-07 [2] CRAN (R 4.5.1)
## doppelgangR 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DoReMiTra 1.0.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## doRNG 1.8.6.2 2025-04-02 [2] CRAN (R 4.5.1)
## dorothea 1.22.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## Doscheda 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DOSE 4.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## doseR 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## doSNOW 1.0.20 2022-02-04 [2] CRAN (R 4.5.1)
## dotCall64 1.2 2024-10-04 [2] CRAN (R 4.5.1)
## DOtools 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DoubleExpSeq 1.1 2015-09-04 [2] CRAN (R 4.5.1)
## doubletrouble 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## downlit 0.4.4 2024-06-10 [2] CRAN (R 4.5.1)
## downloader 0.4.1 2025-03-26 [2] CRAN (R 4.5.1)
## downloadthis 0.5.0 2025-07-11 [2] CRAN (R 4.5.1)
## dplyr 1.1.4 2023-11-17 [2] CRAN (R 4.5.1)
## dqrng 0.4.1 2024-05-28 [2] CRAN (R 4.5.1)
## drawer 0.2.0.1 2022-08-19 [2] CRAN (R 4.5.1)
## drawProteins 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## drc 3.0-1 2016-08-30 [2] CRAN (R 4.5.1)
## dreamlet 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## dressCheck 0.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## DrImpute 1.0 2017-07-15 [2] CRAN (R 4.5.1)
## DRIMSeq 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DriverNet 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DropletTestFiles 1.20.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## DropletUtils 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## drosgenome1.db 3.13.0 2025-09-10 [2] Bioconductor
## drosophila2probe 2.18.0 2025-09-10 [2] Bioconductor
## drtmle 1.1.2 2023-01-05 [2] CRAN (R 4.5.1)
## drugTargetInteractions 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DrugVsDisease 2.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DrugVsDiseasedata 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## DspikeIn 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DSS 2.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## dStruct 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DT 0.34.0 2025-09-02 [2] CRAN (R 4.5.1)
## DTA 2.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## dtangle 2.0.9 2019-12-01 [2] CRAN (R 4.5.1)
## dtplyr 1.3.2 2025-09-10 [2] CRAN (R 4.5.1)
## dtt 0.1-2.1 2025-06-17 [2] CRAN (R 4.5.1)
## dtw 1.23-1 2022-09-19 [2] CRAN (R 4.5.1)
## duckdb 1.4.1 2025-10-16 [2] CRAN (R 4.5.1)
## Dune 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## dunn.test 1.3.6 2024-04-12 [2] CRAN (R 4.5.1)
## DuoClustering2018 1.28.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## DuplexDiscovereR 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## dupRadar 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## DvDdata 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## dyebias 1.70.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## dyebiasexamples 1.50.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## dynamicTreeCut 1.63-1 2016-03-11 [2] CRAN (R 4.5.1)
## DynDoc 1.88.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## e1071 1.7-16 2024-09-16 [2] CRAN (R 4.5.1)
## earth 5.3.4 2024-10-05 [2] CRAN (R 4.5.1)
## easier 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## easierData 1.16.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## EasyCellType 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## easylift 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## easyPubMed 3.1.6 2025-08-25 [2] CRAN (R 4.5.1)
## easyreporting 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## easyRNASeq 2.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EatonEtAlChIPseq 0.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## EBarrays 2.74.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EBcoexpress 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EBImage 4.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EBSEA 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EBSeq 2.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## echarts4r 0.4.6 2025-09-11 [2] CRAN (R 4.5.1)
## ecodist 2.1.3 2023-10-30 [2] CRAN (R 4.5.1)
## ecolicdf 2.18.0 2025-09-10 [2] Bioconductor
## ecoliLeucine 1.50.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ecolitk 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ECOSolveR 0.5.5 2023-05-15 [2] CRAN (R 4.5.1)
## ecp 3.1.6 2024-08-26 [2] CRAN (R 4.5.1)
## Ecume 0.9.2 2024-05-28 [2] CRAN (R 4.5.1)
## EDASeq 2.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## edge 2.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## edgeR 4.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EDIRquery 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## eds 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## effectsize 1.0.1 2025-05-27 [2] CRAN (R 4.5.1)
## effsize 0.8.1 2020-10-05 [2] CRAN (R 4.5.1)
## EGAD 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## egg 0.4.5 2019-07-13 [2] CRAN (R 4.5.1)
## EGSEA 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EGSEA123 1.33.0 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## EGSEAdata 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## einsum 0.1.2 2023-08-28 [2] CRAN (R 4.5.1)
## eiR 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## eisaR 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## elasticnet 1.3 2020-05-15 [2] CRAN (R 4.5.1)
## elitism 1.1.1 2023-09-02 [2] CRAN (R 4.5.1)
## ellipse 0.5.0 2023-07-20 [2] CRAN (R 4.5.1)
## ellipsis 0.3.2 2021-04-29 [2] CRAN (R 4.5.1)
## ellmer 0.3.2 2025-09-03 [2] CRAN (R 4.5.1)
## ELMER 2.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ELMER.data 2.34.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## elsa 1.1-28 2020-03-19 [2] CRAN (R 4.5.1)
## ELViS 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## embed 1.2.0 2025-09-08 [2] CRAN (R 4.5.1)
## emdbook 1.3.14 2025-07-23 [2] CRAN (R 4.5.1)
## emdist 0.3-3 2023-08-18 [2] CRAN (R 4.5.1)
## EMDomics 2.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## emmeans 2.0.0 2025-10-29 [2] CRAN (R 4.5.1)
## emoji 16.0.0 2024-10-28 [2] CRAN (R 4.5.1)
## emojifont 0.5.5 2021-04-20 [2] CRAN (R 4.5.1)
## EmpiricalBrownsMethod 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## emtdata 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ENCODExplorerData 0.99.5 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## energy 1.7-12 2024-08-24 [2] CRAN (R 4.5.1)
## english 1.2-6 2021-08-21 [2] CRAN (R 4.5.1)
## EnhancedVolcano 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## enhancerHomologSearch 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EnMCB 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ENmix 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EnrichDO 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EnrichedHeatmap 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EnrichmentBrowser 2.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## enrichplot 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## enrichR 3.4 2025-02-02 [2] CRAN (R 4.5.1)
## enrichViewNet 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EnsDb.Hsapiens.v75 2.99.0 2025-09-10 [2] Bioconductor
## EnsDb.Hsapiens.v79 2.99.0 2025-09-10 [2] Bioconductor
## EnsDb.Hsapiens.v86 2.99.0 2025-09-10 [2] Bioconductor
## EnsDb.Mmusculus.v79 2.99.0 2025-09-10 [2] Bioconductor
## ensembldb 2.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## entropy 1.3.2 2025-04-07 [2] CRAN (R 4.5.1)
## enviPat 2.6 2022-10-21 [2] CRAN (R 4.5.1)
## EnvStats 3.1.0 2025-04-24 [2] CRAN (R 4.5.1)
## eoPredData 1.4.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## epialleleR 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EpiCompare 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EPICv2manifest 0.99.7 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## epidecodeR 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EpiDISH 2.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## epigenomix 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## epigraHMM 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EpiMix 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EpiMix.data 1.12.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## epimutacions 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## epimutacionsData 1.14.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## epiNEM 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EpipwR 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EpipwR.data 1.4.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## epiR 2.0.88 2025-10-21 [2] CRAN (R 4.5.1)
## epiregulon 2.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## epiregulon.extra 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## epistack 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## epistasisGA 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EpiTxDb 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## EpiTxDb.Hs.hg38 0.99.7 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## EpiTxDb.Mm.mm10 0.99.6 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## EpiTxDb.Sc.sacCer3 0.99.5 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## epivizr 2.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## epivizrChart 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## epivizrData 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## epivizrServer 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## epivizrStandalone 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## erccdashboard 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ERSSA 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## esATAC 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## escape 2.6.1 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## escheR 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## esetVis 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## esquisse 2.1.0 2025-02-21 [2] CRAN (R 4.5.1)
## estimability 1.5.1 2024-05-12 [2] CRAN (R 4.5.1)
## estrogen 1.56.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## etec16s 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## etrunct 0.1 2016-07-04 [2] CRAN (R 4.5.1)
## eudysbiome 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## eulerr 7.0.4 2025-09-24 [2] CRAN (R 4.5.1)
## EuPathDB 1.0.1 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## europepmc 0.4.3 2023-09-20 [2] CRAN (R 4.5.1)
## eva 0.2.6 2020-11-15 [2] CRAN (R 4.5.1)
## evaluate 1.0.5 2025-08-27 [2] CRAN (R 4.5.1)
## evaluomeR 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## evd 2.3-7.1 2024-09-21 [2] CRAN (R 4.5.1)
## EventPointer 3.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## evmix 2.12 2019-09-03 [2] CRAN (R 4.5.1)
## EWCE 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ewceData 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## Exact 3.3 2024-07-21 [2] CRAN (R 4.5.1)
## exactRankTests 0.8-35 2022-04-26 [2] CRAN (R 4.5.1)
## excelR 0.4.0 2020-03-09 [2] CRAN (R 4.5.1)
## excluderanges 0.99.10 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## ExCluster 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ExiMiR 2.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ExperimentHub 3.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ExperimentHubData 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ExperimentSubset 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ExpHunterSuite 1.17.0 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## expint 0.1-8 2022-10-28 [2] CRAN (R 4.5.1)
## ExploreModelMatrix 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## expm 1.0-0 2024-08-19 [2] CRAN (R 4.5.1)
## ExPosition 2.11.0 2025-04-13 [2] CRAN (R 4.5.1)
## ExpressionAtlas 2.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ExpressionNormalizationWorkflow 1.35.0 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## ExtDist 0.7-4 2025-09-23 [2] CRAN (R 4.5.1)
## extraChIPs 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## extraDistr 1.10.0 2023-11-30 [2] CRAN (R 4.5.1)
## extrafont 0.20 2025-09-24 [2] CRAN (R 4.5.1)
## extrafontdb 1.1 2025-09-28 [2] CRAN (R 4.5.1)
## extRemes 2.2-1 2025-05-16 [2] CRAN (R 4.5.1)
## EZtune 3.1.1 2021-12-10 [2] CRAN (R 4.5.1)
## faahKO 1.50.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## fabia 2.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## fabiaData 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## fabricatr 1.0.2 2024-01-16 [2] CRAN (R 4.5.1)
## factDesign 1.86.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## factoextra 1.0.7 2020-04-01 [2] CRAN (R 4.5.1)
## FactoInvestigate 1.9 2023-11-27 [2] CRAN (R 4.5.1)
## FactoMineR 2.12 2025-07-23 [2] CRAN (R 4.5.1)
## factR 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## faers 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## FamAgg 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## famat 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## fANCOVA 0.6-1 2020-11-13 [2] CRAN (R 4.5.1)
## fansi 1.0.6 2023-12-08 [2] CRAN (R 4.5.1)
## FANTOM3and4CAGE 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## farver 2.1.2 2024-05-13 [2] CRAN (R 4.5.1)
## fastcluster 1.3.0 2025-05-07 [2] CRAN (R 4.5.1)
## fastDummies 1.7.5 2025-01-20 [2] CRAN (R 4.5.1)
## fastICA 1.2-7 2024-12-11 [2] CRAN (R 4.5.1)
## fastLiquidAssociation 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## fastmap 1.2.0 2024-05-15 [2] CRAN (R 4.5.1)
## fastmatch 1.1-6 2024-12-23 [2] CRAN (R 4.5.1)
## fastmatrix 0.6-4 2025-10-23 [2] CRAN (R 4.5.1)
## FastqCleaner 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## fastqcr 0.1.3 2023-02-18 [2] CRAN (R 4.5.1)
## fastreeR 2.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## fastseg 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## fBasics 4041.97 2024-08-19 [2] CRAN (R 4.5.1)
## fCCAC 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## fCI 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## fclust 2.1.3 2025-10-18 [2] CRAN (R 4.5.1)
## FCPS 1.3.5 2025-10-30 [2] CRAN (R 4.5.1)
## fcScan 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## fda 6.3.0 2025-05-21 [2] CRAN (R 4.5.1)
## fdatest 2.1.1 2022-05-04 [2] CRAN (R 4.5.1)
## FDb.InfiniumMethylation.hg18 2.2.0 2025-09-10 [2] Bioconductor
## FDb.InfiniumMethylation.hg19 2.2.0 2025-09-10 [2] Bioconductor
## FDb.UCSC.tRNAs 1.0.1 2025-09-10 [2] Bioconductor
## fdrame 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## fdrtool 1.2.18 2024-08-20 [2] CRAN (R 4.5.1)
## fds 1.8 2018-10-31 [2] CRAN (R 4.5.1)
## FEAST 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## FeatSeekR 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## feature 1.2.15 2021-02-10 [2] CRAN (R 4.5.1)
## fedup 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## FELLA 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## fenr 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ff 4.5.2 2025-01-13 [2] CRAN (R 4.5.1)
## ffpe 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ffpeExampleData 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## fftw 1.0-9 2024-09-20 [2] CRAN (R 4.5.1)
## fftwtools 0.9-11 2021-03-01 [2] CRAN (R 4.5.1)
## fGarch 4033.92 2024-03-26 [2] CRAN (R 4.5.1)
## fgga 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## FGNet 3.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## fgsea 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## fibroEset 1.52.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## FieldEffectCrc 1.20.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## fields 17.1 2025-09-08 [2] CRAN (R 4.5.1)
## filehash 2.4-6 2024-06-25 [2] CRAN (R 4.5.1)
## filelock 1.0.3 2023-12-11 [2] CRAN (R 4.5.1)
## filematrix 1.3 2018-02-27 [2] CRAN (R 4.5.1)
## filesstrings 3.4.0 2024-02-11 [2] CRAN (R 4.5.1)
## fillpattern 1.0.2 2024-06-24 [2] CRAN (R 4.5.1)
## FilterFFPE 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## findIPs 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## FindIT2 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## findpython 1.0.9 2024-11-19 [2] CRAN (R 4.5.1)
## FinfoMDS 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## fingerprint 3.5.7 2018-01-07 [2] CRAN (R 4.5.1)
## FIs 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## FISHalyseR 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## fishpond 2.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## fission 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## fit.models 0.64 2020-08-02 [2] CRAN (R 4.5.1)
## fitdistrplus 1.2-4 2025-07-03 [2] CRAN (R 4.5.1)
## FitHiC 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flagme 1.66.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## FLAMES 2.4.1 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flashClust 1.01-2 2012-08-21 [2] CRAN (R 4.5.1)
## flatxml 0.1.1 2020-12-01 [2] CRAN (R 4.5.1)
## Fletcher2013a 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## Fletcher2013b 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## flexclust 1.5.0 2025-02-28 [2] CRAN (R 4.5.1)
## flexdashboard 0.6.2 2023-08-11 [2] CRAN (R 4.5.1)
## flexmix 2.3-20 2025-02-28 [2] CRAN (R 4.5.1)
## FlexParamCurve 1.5-7 2025-08-26 [2] CRAN (R 4.5.1)
## flextable 0.9.10 2025-08-24 [2] CRAN (R 4.5.1)
## float 0.3-3 2025-03-12 [2] CRAN (R 4.5.1)
## flock 0.7 2016-11-12 [2] CRAN (R 4.5.1)
## flowAI 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowBeads 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowBin 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowcatchR 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowCHIC 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowClean 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowClust 3.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowCore 2.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowCut 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowCyBar 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowDensity 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowFP 1.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowGate 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowGraph 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowMatch 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowMeans 1.70.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowMerge 2.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowPeaks 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowPloidy 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowPloidyData 1.36.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## flowPlots 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## FlowSOM 2.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## FlowSorted.Blood.450k 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## FlowSorted.Blood.EPIC 2.14.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## FlowSorted.CordBlood.450k 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## FlowSorted.CordBloodCombined.450k 1.26.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## FlowSorted.CordBloodNorway.450k 1.36.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## FlowSorted.DLPFC.450k 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## flowSpecs 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowStats 4.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowTime 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowTrans 1.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowViz 1.74.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowVS 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowWorkspace 4.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## flowWorkspaceData 3.22.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## fluentGenomics 1.21.0 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## fmcsR 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## FME 1.3.6.4 2025-07-25 [2] CRAN (R 4.5.1)
## fmrs 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## fmsb 0.7.6 2024-01-19 [2] CRAN (R 4.5.1)
## FMStable 0.1-4 2022-06-06 [2] CRAN (R 4.5.1)
## FNN 1.1.4.1 2024-09-22 [2] CRAN (R 4.5.1)
## fobitools 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## fontawesome 0.5.3 2024-11-16 [2] CRAN (R 4.5.1)
## fontBitstreamVera 0.1.1 2017-02-01 [2] CRAN (R 4.5.1)
## fontLiberation 0.1.0 2016-10-15 [2] CRAN (R 4.5.1)
## fontquiver 0.2.1 2017-02-01 [2] CRAN (R 4.5.1)
## forcats 1.0.1 2025-09-25 [2] CRAN (R 4.5.1)
## foreach 1.5.2 2022-02-02 [2] CRAN (R 4.5.1)
## forecast 8.24.0 2025-04-08 [2] CRAN (R 4.5.1)
## foreign 0.8-90 2025-03-31 [3] CRAN (R 4.5.1)
## forestplot 3.1.7 2025-06-12 [2] CRAN (R 4.5.1)
## formatR 1.14 2023-01-17 [2] CRAN (R 4.5.1)
## formattable 0.2.1 2021-01-07 [2] CRAN (R 4.5.1)
## Formula 1.2-5 2023-02-24 [2] CRAN (R 4.5.1)
## formula.tools 1.7.1 2018-03-01 [2] CRAN (R 4.5.1)
## fossil 0.4.0 2020-03-23 [2] CRAN (R 4.5.1)
## fourDNData 1.10.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## fpc 2.2-13 2024-09-24 [2] CRAN (R 4.5.1)
## fracdiff 1.5-3 2024-02-01 [2] CRAN (R 4.5.1)
## fractional 0.1.3 2016-02-15 [2] CRAN (R 4.5.1)
## FRASER 2.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## frenchFISH 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## fresh 0.2.2 2025-09-04 [2] CRAN (R 4.5.1)
## FRGEpistasis 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## frma 1.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## frmaExampleData 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## frmaTools 1.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## fs 1.6.6 2025-04-12 [2] CRAN (R 4.5.1)
## FSA 0.10.0 2025-05-06 [2] CRAN (R 4.5.1)
## fscache 1.0.5 2024-06-02 [2] CRAN (R 4.5.1)
## FSelector 0.34 2023-08-22 [2] CRAN (R 4.5.1)
## fst 0.9.8 2022-02-08 [2] CRAN (R 4.5.1)
## fstcore 0.10.0 2025-02-10 [2] CRAN (R 4.5.1)
## functional 0.6 2014-07-16 [2] CRAN (R 4.5.1)
## funkycells 1.1.1 2023-08-09 [2] CRAN (R 4.5.1)
## funOmics 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## funtooNorm 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## furrowSeg 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## furrr 0.3.1 2022-08-15 [2] CRAN (R 4.5.1)
## FuseSOM 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## futile.logger 1.4.3 2016-07-10 [2] CRAN (R 4.5.1)
## futile.options 1.0.1 2018-04-20 [2] CRAN (R 4.5.1)
## future 1.67.0 2025-07-29 [2] CRAN (R 4.5.1)
## future.apply 1.20.0 2025-06-06 [2] CRAN (R 4.5.1)
## fuzzyjoin 0.1.6.1 2025-07-10 [2] CRAN (R 4.5.1)
## G4SNVHunter 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GA 3.2.4 2024-01-28 [2] CRAN (R 4.5.1)
## GA4GHclient 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GA4GHshiny 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gaga 2.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gage 2.60.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gageData 2.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## gam 1.22-6 2025-08-22 [2] CRAN (R 4.5.1)
## gamlss 5.5-0 2025-08-19 [2] CRAN (R 4.5.1)
## gamlss.data 6.0-7 2025-09-04 [2] CRAN (R 4.5.1)
## gamlss.dist 6.1-1 2023-08-23 [2] CRAN (R 4.5.1)
## gamlss.tr 5.1-9 2024-01-30 [2] CRAN (R 4.5.1)
## gamm4 0.2-7 2025-04-22 [2] CRAN (R 4.5.1)
## gap 1.6 2024-08-27 [2] CRAN (R 4.5.1)
## gap.datasets 0.0.6 2023-08-25 [2] CRAN (R 4.5.1)
## GAprediction 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## garfield 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gargle 1.6.0 2025-09-03 [2] CRAN (R 4.5.1)
## GARS 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gaschYHS 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## GateFinder 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gatom 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gbm 2.2.2 2024-06-28 [2] CRAN (R 4.5.1)
## GBScleanR 2.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gbutils 0.5 2022-05-27 [2] CRAN (R 4.5.1)
## gcapc 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gcatest 2.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gclus 1.3.3 2025-03-28 [2] CRAN (R 4.5.1)
## GCPtools 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gCrisprTools 2.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gcrma 2.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gcspikelite 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## gdata 3.0.1 2024-10-22 [2] CRAN (R 4.5.1)
## GDCRNATools 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gDNAinRNAseqData 1.10.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## gDNAx 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gDR 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gDRcore 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gDRimport 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gDRstyle 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gDRtestData 1.8.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## gDRutils 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GDSArray 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gdsfmt 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gdtools 0.4.4 2025-10-06 [2] CRAN (R 4.5.1)
## GeDi 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## geeM 0.10.1 2018-06-18 [2] CRAN (R 4.5.1)
## geepack 1.3.13 2025-10-14 [2] CRAN (R 4.5.1)
## geigen 2.3 2019-05-30 [2] CRAN (R 4.5.1)
## GEM 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gemini 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gemma.R 3.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## genalg 0.2.1 2022-04-04 [2] CRAN (R 4.5.1)
## genArise 1.86.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## geneAttribution 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GeneBreak 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## geneClassifiers 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## geneExpressionFromGEO 1.2 2025-04-11 [2] CRAN (R 4.5.1)
## GeneExpressionSignature 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## genefilter 1.92.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## genefu 2.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GeneGA 1.60.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## genekitr 1.2.8 2024-09-06 [2] CRAN (R 4.5.1)
## geneLenDataBase 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## GeneMeta 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GeneNet 1.2.17 2025-04-07 [2] CRAN (R 4.5.1)
## GeneNetworkBuilder 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GeneOverlap 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## geneplast 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## geneplast.data 0.99.9 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## geneplast.data.string.v91 0.99.6 2025-09-10 [2] Bioconductor
## geneplotter 1.88.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## geneRecommender 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GeneRegionScan 1.66.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## generegulation 1.33.0 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## generics 0.1.4 2025-05-09 [2] CRAN (R 4.5.1)
## geneRxCluster 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GeneSelectMMD 2.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## geneset 0.2.7 2022-11-20 [2] CRAN (R 4.5.1)
## GENESIS 2.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GeneStructureTools 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GeneSummary 0.99.6 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## geNetClassifier 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## genetics 1.3.8.1.3 2021-03-01 [2] CRAN (R 4.5.1)
## GeneticsPed 1.72.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GeneTonic 3.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## geneXtendeR 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GENIE3 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## genieclust 1.2.0 2025-07-24 [2] CRAN (R 4.5.1)
## genio 1.1.2 2023-01-06 [2] CRAN (R 4.5.1)
## genlasso 1.6.1 2022-08-22 [2] CRAN (R 4.5.1)
## GENLIB 1.1.10 2024-02-19 [2] CRAN (R 4.5.1)
## genomation 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## genomationData 1.42.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## GenomAutomorphism 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GenomeInfoDb 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GenomeInfoDbData 1.2.15 2025-09-29 [2] Bioconductor
## genomeIntervals 1.66.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## genomes 3.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## genomewidesnp5Crlmm 1.0.6 2025-09-10 [2] local
## genomewidesnp6Crlmm 1.0.7 2025-09-10 [2] Bioconductor
## GenomicAlignments 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GenomicDataCommons 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GenomicDistributions 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GenomicDistributionsData 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## GenomicFeatures 1.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GenomicFiles 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## genomicInstability 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GenomicInteractionNodes 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GenomicInteractions 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GenomicOZone 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GenomicPlot 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GenomicRanges 1.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GenomicScores 2.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GenomicState 0.99.17 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## GenomicSuperSignature 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GenomicTools.fileHandler 0.1.5.9 2020-03-05 [2] CRAN (R 4.5.1)
## GenomicTuples 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GenProSeq 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GenSA 1.1.14.1 2024-09-21 [2] CRAN (R 4.5.1)
## GenVisR 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GeoDiff 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GEOexplorer 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GEOfastq 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## geojsonsf 2.0.3 2022-05-30 [2] CRAN (R 4.5.1)
## GEOmetadb 1.72.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## geomeTriD 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## geometries 0.2.4 2024-01-15 [2] CRAN (R 4.5.1)
## geometry 0.5.2 2025-02-08 [2] CRAN (R 4.5.1)
## GeomxTools 3.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GeoMxWorkflows 1.15.1 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## GEOquery 2.78.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## geosphere 1.5-20 2024-10-04 [2] CRAN (R 4.5.1)
## GEOsubmission 1.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GeoTcgaData 2.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gep2pep 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gert 2.1.5 2025-03-25 [2] CRAN (R 4.5.1)
## getDEE2 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## getopt 1.20.4 2023-10-01 [2] CRAN (R 4.5.1)
## GetoptLong 1.0.5 2020-12-15 [2] CRAN (R 4.5.1)
## getPass 0.2-4 2023-12-10 [2] CRAN (R 4.5.1)
## GeuvadisTranscriptExpr 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## geva 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GEWIST 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## geyser 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GFA 1.0.5 2023-10-21 [2] CRAN (R 4.5.1)
## gg4way 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ggalluvial 0.12.5 2023-02-22 [2] CRAN (R 4.5.1)
## GGally 2.4.0 2025-08-23 [2] CRAN (R 4.5.1)
## gganimate 1.0.11 2025-09-04 [2] CRAN (R 4.5.1)
## ggarchery 0.4.4 2025-07-24 [2] CRAN (R 4.5.1)
## ggbeeswarm 0.7.2 2023-04-29 [2] CRAN (R 4.5.1)
## ggbio 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ggbump 0.1.0 2020-04-24 [2] CRAN (R 4.5.1)
## ggcorrplot 0.1.4.1 2023-09-05 [2] CRAN (R 4.5.1)
## ggcyto 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ggdendro 0.2.0 2024-02-23 [2] CRAN (R 4.5.1)
## ggdensity 1.0.0 2023-02-09 [2] CRAN (R 4.5.1)
## ggdist 3.3.3 2025-04-23 [2] CRAN (R 4.5.1)
## ggeasy 0.1.6 2025-06-15 [2] CRAN (R 4.5.1)
## ggeffects 2.3.1 2025-08-20 [2] CRAN (R 4.5.1)
## ggExtra 0.11.0 2025-09-01 [2] CRAN (R 4.5.1)
## ggfittext 0.10.2 2024-02-01 [2] CRAN (R 4.5.1)
## ggforce 0.5.0 2025-06-18 [2] CRAN (R 4.5.1)
## ggformula 1.0.0 2025-10-06 [2] CRAN (R 4.5.1)
## ggfortify 0.4.19 2025-07-27 [2] CRAN (R 4.5.1)
## ggfun 0.2.0 2025-07-15 [2] CRAN (R 4.5.1)
## gggenes 0.5.1 2023-09-05 [2] CRAN (R 4.5.1)
## ggh4x 0.3.1 2025-05-30 [2] CRAN (R 4.5.1)
## gghalves 0.1.4 2022-11-20 [2] CRAN (R 4.5.1)
## gghighlight 0.5.0 2025-06-14 [2] CRAN (R 4.5.1)
## ggHoriPlot 1.0.1 2022-10-11 [2] CRAN (R 4.5.1)
## ggimage 0.3.4 2025-08-24 [2] CRAN (R 4.5.1)
## gginnards 0.2.0-1 2024-11-14 [2] CRAN (R 4.5.1)
## ggiraph 0.9.2 2025-10-07 [2] CRAN (R 4.5.1)
## ggiraphExtra 0.3.0 2020-10-06 [2] CRAN (R 4.5.1)
## ggkegg 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ggm 2.5.2 2025-07-25 [2] CRAN (R 4.5.1)
## ggmanh 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ggmcmc 1.5.1.2 2025-10-02 [2] CRAN (R 4.5.1)
## ggmsa 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ggnetwork 0.5.14 2025-09-10 [2] CRAN (R 4.5.1)
## ggnewscale 0.5.2 2025-06-20 [2] CRAN (R 4.5.1)
## GGPA 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ggpattern 1.2.1 2025-08-27 [2] CRAN (R 4.5.1)
## ggplot.multistats 1.0.1 2024-09-25 [2] CRAN (R 4.5.1)
## ggplot2 4.0.0 2025-09-11 [2] CRAN (R 4.5.1)
## ggplotify 0.1.3 2025-09-20 [2] CRAN (R 4.5.1)
## ggpmisc 0.6.2 2025-07-08 [2] CRAN (R 4.5.1)
## ggpointdensity 0.2.0 2025-05-16 [2] CRAN (R 4.5.1)
## ggpp 0.5.9 2025-06-28 [2] CRAN (R 4.5.1)
## ggprism 1.0.7 2025-08-23 [2] CRAN (R 4.5.1)
## ggpubr 0.6.2 2025-10-17 [2] CRAN (R 4.5.1)
## ggraph 2.2.2 2025-08-24 [2] CRAN (R 4.5.1)
## ggrastr 1.0.2 2023-06-01 [2] CRAN (R 4.5.1)
## ggrepel 0.9.6 2024-09-07 [2] CRAN (R 4.5.1)
## ggridges 0.5.7 2025-08-27 [2] CRAN (R 4.5.1)
## ggsc 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ggsci 4.1.0 2025-10-25 [2] CRAN (R 4.5.1)
## ggseqalign 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ggseqlogo 0.2 2024-02-09 [2] CRAN (R 4.5.1)
## ggside 0.4.0 2025-09-13 [2] CRAN (R 4.5.1)
## ggsignif 0.6.4 2022-10-13 [2] CRAN (R 4.5.1)
## ggspavis 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ggstance 0.3.7 2024-04-05 [2] CRAN (R 4.5.1)
## ggstar 1.0.6 2025-09-19 [2] CRAN (R 4.5.1)
## ggstats 0.11.0 2025-09-15 [2] CRAN (R 4.5.1)
## ggsurvfit 1.2.0 2025-09-13 [2] CRAN (R 4.5.1)
## ggtangle 0.0.7 2025-06-30 [2] CRAN (R 4.5.1)
## ggtern 3.5.0 2024-03-24 [2] CRAN (R 4.5.1)
## ggtext 0.1.2 2022-09-16 [2] CRAN (R 4.5.1)
## ggthemes 5.1.0 2024-02-10 [2] CRAN (R 4.5.1)
## ggtree 4.0.1 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ggtreeDendro 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ggtreeExtra 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ggtreeSpace 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ggupset 0.4.1 2025-02-11 [2] CRAN (R 4.5.1)
## ggvenn 0.1.19 2025-10-08 [2] CRAN (R 4.5.1)
## ggVennDiagram 1.5.4 2025-06-21 [2] CRAN (R 4.5.1)
## ggvis 0.4.9 2024-02-05 [2] CRAN (R 4.5.1)
## ggwordcloud 0.6.2 2024-05-30 [2] CRAN (R 4.5.1)
## gh 1.5.0 2025-05-26 [2] CRAN (R 4.5.1)
## GIGSEA 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GIGSEAdata 1.28.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ginmappeR 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gINTomics 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## git2r 0.36.2 2025-03-29 [2] CRAN (R 4.5.1)
## gitcreds 0.1.2 2022-09-08 [2] CRAN (R 4.5.1)
## GLAD 2.74.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GladiaTOX 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## glasso 1.11 2019-10-01 [2] CRAN (R 4.5.1)
## glassoFast 1.0.1 2023-08-21 [2] CRAN (R 4.5.1)
## gld 2.6.8 2025-09-14 [2] CRAN (R 4.5.1)
## Glimma 2.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## glm2 1.2.1 2018-08-11 [2] CRAN (R 4.5.1)
## glmGamPoi 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## glmmSeq 0.5.7 2025-10-02 [2] CRAN (R 4.5.1)
## glmmTMB 1.1.13 2025-10-09 [2] CRAN (R 4.5.1)
## glmnet 4.1-10 2025-07-17 [2] CRAN (R 4.5.1)
## glmnetUtils 1.1.9 2023-09-10 [2] CRAN (R 4.5.1)
## glmpca 0.2.0 2020-07-18 [2] CRAN (R 4.5.1)
## glmSparseNet 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GlobalAncova 4.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GlobalOptions 0.1.2 2020-06-10 [2] CRAN (R 4.5.1)
## globals 0.18.0 2025-05-08 [2] CRAN (R 4.5.1)
## globalSeq 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## globaltest 5.64.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GloScope 2.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## glue 1.8.0 2024-09-30 [2] CRAN (R 4.5.1)
## gmapR 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GmicR 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gmm 1.9-1 2025-08-26 [2] CRAN (R 4.5.1)
## gmodels 2.19.1 2024-03-06 [2] CRAN (R 4.5.1)
## gmoviz 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gmp 0.7-5 2024-08-23 [2] CRAN (R 4.5.1)
## GMRP 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GNET2 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gnm 1.1-5 2023-09-16 [2] CRAN (R 4.5.1)
## GNOSIS 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GO.db 3.22.0 2025-10-08 [2] Bioconductor
## goat 1.1.3 2025-08-27 [2] CRAN (R 4.5.1)
## goatea 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GOexpress 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GoFKernel 2.1-3 2024-12-06 [2] CRAN (R 4.5.1)
## goftest 1.2-3 2021-10-07 [2] CRAN (R 4.5.1)
## GOfuncR 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## golem 0.5.1 2024-08-27 [2] CRAN (R 4.5.1)
## golubEsets 1.52.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## googledrive 2.1.2 2025-09-10 [2] CRAN (R 4.5.1)
## googlesheets4 1.1.2 2025-09-03 [2] CRAN (R 4.5.1)
## googleVis 0.7.3 2024-05-25 [2] CRAN (R 4.5.1)
## GOpro 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## goProfiles 1.72.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GOSemSim 2.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## goseq 1.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## goSorensen 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## goSTAG 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GOstats 2.76.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GOTHiC 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## goTools 1.84.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gower 1.0.2 2024-12-17 [2] CRAN (R 4.5.1)
## GPA 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gpaExample 1.22.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## GPArotation 2025.3-1 2025-04-12 [2] CRAN (R 4.5.1)
## gplots 3.2.0 2024-10-05 [2] CRAN (R 4.5.1)
## gpls 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gProfileR 0.7.0 2019-11-04 [2] CRAN (R 4.5.1)
## gprofiler2 0.2.3 2024-02-23 [2] CRAN (R 4.5.1)
## GrafGen 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gRain 1.4.5 2024-10-17 [2] CRAN (R 4.5.1)
## GRaNIE 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## granulator 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## graper 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## graph 1.88.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GraphAlignment 1.74.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GraphAT 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## graphics * 4.5.1 2025-09-10 [3] local
## graphite 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## graphlayouts 1.2.2 2025-01-23 [2] CRAN (R 4.5.1)
## grasp2db 1.1.1 2025-09-10 [2] local
## gRbase 2.0.3 2024-10-22 [2] CRAN (R 4.5.1)
## grDevices * 4.5.1 2025-09-10 [3] local
## GRENITS 1.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GreyListChIP 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## grid 4.5.1 2025-09-10 [3] local
## gridBase 0.4-7 2014-02-24 [2] CRAN (R 4.5.1)
## gridExtra 2.3 2017-09-09 [2] CRAN (R 4.5.1)
## gridGraphics 0.5-1 2020-12-13 [2] CRAN (R 4.5.1)
## gridpattern 1.3.1 2025-01-16 [2] CRAN (R 4.5.1)
## gridSVG 1.7-7 2025-10-31 [2] CRAN (R 4.5.1)
## gridtext 0.1.5 2022-09-16 [2] CRAN (R 4.5.1)
## grImport 0.9-7 2023-03-09 [2] CRAN (R 4.5.1)
## grImport2 0.3-3 2024-07-30 [2] CRAN (R 4.5.1)
## GRmetrics 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## grndata 1.42.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## groHMM 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## groupdata2 2.0.5 2024-12-18 [2] CRAN (R 4.5.1)
## grpreg 3.5.0 2024-09-03 [2] CRAN (R 4.5.1)
## grr 0.9.5 2016-08-26 [2] CRAN (R 4.5.1)
## GSA 1.03.3 2024-04-20 [2] CRAN (R 4.5.1)
## GSALightning 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GSAR 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GSBenchMark 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## GSCA 2.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gscreend 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GSE103322 1.16.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## GSE13015 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## GSE159526 1.16.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## GSE62944 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## GSEABase 1.72.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GSEABenchmarkeR 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GSEAlm 1.70.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GSEAmining 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gsean 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GSgalgoR 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gsignal 0.3-7 2024-09-11 [2] CRAN (R 4.5.1)
## gsl 2.1-8 2023-01-24 [2] CRAN (R 4.5.1)
## gson 0.1.0 2023-03-07 [2] CRAN (R 4.5.1)
## GSReg 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GSRI 2.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gss 2.2-9 2025-04-13 [2] CRAN (R 4.5.1)
## gstat 2.1-4 2025-07-10 [2] CRAN (R 4.5.1)
## gsubfn 0.7 2018-03-16 [2] CRAN (R 4.5.1)
## GSVA 2.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GSVAdata 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## gt 1.1.0 2025-09-23 [2] CRAN (R 4.5.1)
## gtable 0.3.6 2024-10-25 [2] CRAN (R 4.5.1)
## gtools 3.9.5 2023-11-20 [2] CRAN (R 4.5.1)
## gtrellis 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GUIDEseq 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Guitar 2.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GUniFrac 1.9 2025-08-25 [2] CRAN (R 4.5.1)
## gVenn 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Gviz 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GWAS.BAYES 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gwascat 2.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gwascatData 0.99.6 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## GWASdata 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## GWASExactHW 1.2 2024-03-12 [2] CRAN (R 4.5.1)
## gwasrapidd 0.99.18 2025-05-31 [2] CRAN (R 4.5.1)
## GWASTools 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gwasurvivr 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## GWENA 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## gypsum 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## h5mread 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## h5vc 2.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## h5vcData 2.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## hapFabia 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## haplo.stats 1.9.7 2024-09-19 [2] CRAN (R 4.5.1)
## hapmap100khind 1.52.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## hapmap100kxba 1.52.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## hapmap500knsp 1.52.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## hapmap500ksty 1.52.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## hapmapsnp5 1.52.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## hapmapsnp6 1.52.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## harbChIP 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## hardhat 1.4.2 2025-08-20 [2] CRAN (R 4.5.1)
## HardyWeinberg 1.7.9 2025-09-10 [2] CRAN (R 4.5.1)
## Harman 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HarmanData 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## harmonicmeanp 3.0.1 2024-01-17 [2] CRAN (R 4.5.1)
## HarmonizedTCGAData 1.32.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## HarmonizR 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## harmony 1.2.4 2025-10-10 [2] CRAN (R 4.5.1)
## hash 2.2.6.3 2023-08-19 [2] CRAN (R 4.5.1)
## haven 2.5.5 2025-05-30 [2] CRAN (R 4.5.1)
## hca 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HCAData 1.26.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## HCATonsilData 1.8.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## HD2013SGI 1.50.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## HDCI 1.0-2 2017-06-06 [2] CRAN (R 4.5.1)
## HDCytoData 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## HDF5Array 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## hdf5r 1.3.12 2025-01-20 [2] CRAN (R 4.5.1)
## HDInterval 0.2.4 2022-11-17 [2] CRAN (R 4.5.1)
## hdrcde 3.4 2021-01-18 [2] CRAN (R 4.5.1)
## HDTD 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## hdxmsqc 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## healthyControlsPresenceChecker 1.14.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## healthyFlowData 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## heatmap3 1.1.9 2021-01-06 [2] CRAN (R 4.5.1)
## heatmaply 1.6.0 2025-07-12 [2] CRAN (R 4.5.1)
## heatmaps 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Heatplus 3.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HEEBOdata 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## HelloRanges 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HelloRangesData 1.36.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## HELP 1.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HEM 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## henna 0.3.4 2025-10-19 [2] CRAN (R 4.5.1)
## here 1.0.2 2025-09-15 [2] CRAN (R 4.5.1)
## hermes 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HERON 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Herper 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## hexbin 1.28.5 2024-11-13 [2] CRAN (R 4.5.1)
## hexDensity 1.4.10 2025-09-28 [2] CRAN (R 4.5.1)
## HGC 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## hgfocuscdf 2.18.0 2025-09-10 [2] Bioconductor
## hgfocusprobe 2.18.0 2025-09-10 [2] Bioconductor
## HGNChelper 0.8.15 2024-11-16 [2] CRAN (R 4.5.1)
## hgu133a.db 3.13.0 2025-09-10 [2] Bioconductor
## hgu133a2.db 3.13.0 2025-09-10 [2] Bioconductor
## hgu133abarcodevecs 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## hgu133acdf 2.18.0 2025-09-10 [2] Bioconductor
## hgu133afrmavecs 1.5.0 2025-09-10 [2] Bioconductor
## hgu133aprobe 2.18.0 2025-09-10 [2] Bioconductor
## hgu133atagcdf 2.18.0 2025-09-10 [2] Bioconductor
## hgu133atagprobe 2.18.0 2025-09-10 [2] Bioconductor
## hgu133plus2.db 3.13.0 2025-09-10 [2] Bioconductor
## hgu133plus2barcodevecs 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## hgu133plus2cdf 2.18.0 2025-09-10 [2] Bioconductor
## hgu133plus2CellScore 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## hgu133plus2frmavecs 1.5.0 2025-09-11 [2] Bioconductor
## hgu133plus2probe 2.18.0 2025-09-10 [2] Bioconductor
## hgu2beta7 1.50.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## hgu95a.db 3.13.0 2025-09-10 [2] Bioconductor
## hgu95acdf 2.18.0 2025-09-10 [2] Bioconductor
## hgu95av2 2.2.0 2025-09-10 [2] Bioconductor
## hgu95av2.db 3.13.0 2025-09-10 [2] Bioconductor
## hgu95av2cdf 2.18.0 2025-09-10 [2] Bioconductor
## hgu95av2probe 2.18.0 2025-09-10 [2] Bioconductor
## hiAnnotator 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HIBAG 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HiBED 1.8.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## HicAggR 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HiCaptuRe 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HiCBricks 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HiCcompare 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HiCDataHumanIMR90 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## HiCDataLymphoblast 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## HiCDCPlus 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HiCDOC 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HiCExperiment 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HiContacts 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HiContactsData 1.12.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## HiCool 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HiCParser 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HiCPotts 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## hicVennDiagram 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HiddenMarkov 1.8-14 2025-01-28 [2] CRAN (R 4.5.1)
## hierGWAS 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## hierinf 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## highcharter 0.9.4 2022-01-03 [2] CRAN (R 4.5.1)
## HighlyReplicatedRNASeq 1.22.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## highr 0.11 2024-05-26 [2] CRAN (R 4.5.1)
## highthroughputassays 1.33.0 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## Hiiragi2013 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## HilbertCurve 2.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HilbertVis 1.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HilbertVisGUI 1.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HiLDA 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## hipathia 3.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HIPPO 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## hiReadsProcessor 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HIREewas 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## hitandrun 0.5-6 2022-05-27 [2] CRAN (R 4.5.1)
## HiTC 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HIVcDNAvantWout03 1.50.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## HiveR 0.4.0 2024-07-18 [2] CRAN (R 4.5.1)
## hmdbQuery 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Hmisc 5.2-4 2025-10-05 [2] CRAN (R 4.5.1)
## HMM 1.0.2 2025-05-16 [2] CRAN (R 4.5.1)
## HMMcopy 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HMP 2.0.1 2019-08-31 [2] CRAN (R 4.5.1)
## HMP16SData 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## HMP2Data 1.24.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## hms 1.1.4 2025-10-17 [2] CRAN (R 4.5.1)
## HoloFoodR 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Homo.sapiens 1.3.1 2025-09-10 [2] Bioconductor
## homologene 1.4.68.19.3.27 2019-03-28 [2] CRAN (R 4.5.1)
## homosapienDEE2CellScore 1.6.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## hoodscanR 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## hopach 2.70.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HPAanalyze 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## hpAnnot 1.1.1 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## hpar 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HPiP 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HSMMSingleCell 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## htm2txt 2.2.2 2022-06-12 [2] CRAN (R 4.5.1)
## htmlTable 2.4.3 2024-07-21 [2] CRAN (R 4.5.1)
## htmltools 0.5.8.1 2024-04-04 [2] CRAN (R 4.5.1)
## HTMLUtils 0.1.9 2024-01-25 [2] CRAN (R 4.5.1)
## htmlwidgets 1.6.4 2023-12-06 [2] CRAN (R 4.5.1)
## HTqPCR 1.64.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HTSCluster 2.0.11 2023-09-05 [2] CRAN (R 4.5.1)
## HTSFilter 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## httpcode 0.3.0 2020-04-10 [2] CRAN (R 4.5.1)
## httptest 4.2.2 2024-01-23 [2] CRAN (R 4.5.1)
## httptest2 1.2.1 2025-07-27 [2] CRAN (R 4.5.1)
## httpuv 1.6.16 2025-04-16 [2] CRAN (R 4.5.1)
## httr 1.4.7 2023-08-15 [2] CRAN (R 4.5.1)
## httr2 1.2.1 2025-07-22 [2] CRAN (R 4.5.1)
## hu6800.db 3.13.0 2025-09-10 [2] Bioconductor
## HuBMAPR 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HubPub 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## hues 0.2.0 2019-12-01 [2] CRAN (R 4.5.1)
## huge 1.3.5 2021-06-30 [2] CRAN (R 4.5.1)
## hugene10sttranscriptcluster.db 8.8.0 2025-09-16 [2] Bioconductor
## human.db0 3.22.0 2025-10-08 [2] Bioconductor
## human370v1cCrlmm 1.0.2 2025-09-10 [2] Bioconductor
## human610quadv1bCrlmm 1.0.3 2025-09-10 [2] Bioconductor
## HumanAffyData 1.36.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## humanCHRLOC 2.1.6 2025-09-10 [2] Bioconductor
## humanHippocampus2024 1.2.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## humanStemCell 0.50.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## hummingbird 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## hunspell 3.0.6 2025-03-22 [2] CRAN (R 4.5.1)
## HVP 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## hwriter 1.3.2.1 2022-04-08 [2] CRAN (R 4.5.1)
## HybridExpress 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## HybridMTest 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## hyperdraw 1.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## hypergraph 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iASeq 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iasva 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iBBiG 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Ibex 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ibh 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iBMQ 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iC10 2.0.2 2024-07-19 [2] CRAN (R 4.5.1)
## iC10TrainingData 2.0.1 2024-07-16 [2] CRAN (R 4.5.1)
## ica 1.0-3 2022-07-08 [2] CRAN (R 4.5.1)
## iCARE 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iCellR 1.7.0 2025-10-28 [2] CRAN (R 4.5.1)
## Icens 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## icetea 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iCheck 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iChip 1.64.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iClusterPlus 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iCNV 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iCOBRA 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ICS 1.4-2 2025-03-18 [2] CRAN (R 4.5.1)
## ICSNP 1.1-2 2023-09-18 [2] CRAN (R 4.5.1)
## ideal 2.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## IdeoViz 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## idiogram 1.86.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## IDPmisc 1.1.21 2024-02-08 [2] CRAN (R 4.5.1)
## idpr 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## idr 1.3 2022-06-21 [2] CRAN (R 4.5.1)
## idr2d 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ids 1.0.1 2017-05-31 [2] CRAN (R 4.5.1)
## ieugwasr 1.1.0 2025-07-31 [2] CRAN (R 4.5.1)
## IFAA 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## igblastr 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iGC 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## IgGeneUsage 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## igraph 2.2.1 2025-10-27 [2] CRAN (R 4.5.1)
## igraphdata 1.0.1 2015-07-13 [2] CRAN (R 4.5.1)
## igvR 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## igvShiny 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## IHW 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## IHWpaper 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ijtiff 3.1.3 2025-04-05 [2] CRAN (R 4.5.1)
## Illumina450ProbeVariants.db 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## IlluminaDataTestFiles 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## IlluminaHumanMethylation450kanno.ilmn12.hg19 0.6.1 2025-09-10 [2] Bioconductor
## IlluminaHumanMethylation450kmanifest 0.4.0 2025-09-10 [2] Bioconductor
## IlluminaHumanMethylationEPICanno.ilm10b2.hg19 0.6.0 2025-09-10 [2] Bioconductor
## IlluminaHumanMethylationEPICanno.ilm10b4.hg19 0.6.0 2025-09-10 [2] Bioconductor
## IlluminaHumanMethylationEPICmanifest 0.3.0 2025-09-10 [2] Bioconductor
## IlluminaHumanMethylationEPICv2anno.20a1.hg38 1.0.0 2025-09-10 [2] Bioconductor
## IlluminaHumanMethylationEPICv2manifest 1.0.0 2025-09-10 [2] Bioconductor
## illuminaHumanv1.db 1.26.0 2025-09-10 [2] Bioconductor
## illuminaHumanv2.db 1.26.0 2025-09-11 [2] Bioconductor
## illuminaHumanv3.db 1.26.0 2025-09-10 [2] Bioconductor
## illuminaHumanv4.db 1.26.0 2025-09-10 [2] Bioconductor
## illuminaio 0.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ILoReg 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## imager 1.0.5 2025-08-02 [2] CRAN (R 4.5.1)
## imageTCGA 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## IMAS 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## imcdatasets 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## imcRtools 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iml 0.11.4 2025-02-24 [2] CRAN (R 4.5.1)
## IMMAN 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## immApex 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## immunoClust 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## immunogenViewer 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## immunotation 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iModMix 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iModMixData 1.0.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## imp4p 1.2 2021-09-02 [2] CRAN (R 4.5.1)
## IMPCdata 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## import 1.3.4 2025-10-19 [2] CRAN (R 4.5.1)
## impute 1.84.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## imputeLCMD 2.1 2022-06-10 [2] CRAN (R 4.5.1)
## inaparc 1.2.1 2025-09-14 [2] CRAN (R 4.5.1)
## INDEED 2.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ineq 0.2-13 2014-07-21 [2] CRAN (R 4.5.1)
## iNETgrate 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## INetTool 0.1.1 2025-06-19 [2] CRAN (R 4.5.1)
## iNEXT 3.0.2 2025-07-30 [2] CRAN (R 4.5.1)
## infercnv 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## infinityFlow 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## inflection 1.3.7 2025-07-17 [2] CRAN (R 4.5.1)
## Informeasure 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## infotheo 1.2.0.1 2022-04-08 [2] CRAN (R 4.5.1)
## ini 0.3.1 2018-05-20 [2] CRAN (R 4.5.1)
## inline 0.3.21 2025-01-09 [2] CRAN (R 4.5.1)
## InPAS 2.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## INPower 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## insight 1.4.2 2025-09-02 [2] CRAN (R 4.5.1)
## INSPEcT 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## instantiate 0.2.3 2024-10-02 [2] CRAN (R 4.5.1)
## INTACT 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## InTAD 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## intansv 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## interacCircos 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## InteractionSet 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## InteractiveComplexHeatmap 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## interactiveDisplay 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## interactiveDisplayBase 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## InterCellar 2.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## IntEREst 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## intergraph 2.0-4 2024-02-01 [2] CRAN (R 4.5.1)
## interp 1.1-6 2024-01-26 [2] CRAN (R 4.5.1)
## intervals 0.15.5 2024-08-23 [2] CRAN (R 4.5.1)
## IntramiRExploreR 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## intrinsicDimension 1.2.0 2019-06-07 [2] CRAN (R 4.5.1)
## inum 1.0-5 2023-03-09 [2] CRAN (R 4.5.1)
## InvariantCausalPrediction 0.8 2019-11-10 [2] CRAN (R 4.5.1)
## invgamma 1.2 2025-07-02 [2] CRAN (R 4.5.1)
## IONiseR 2.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iPath 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ipdDb 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ipflasso 1.1 2019-12-10 [2] CRAN (R 4.5.1)
## IPO 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ipred 0.9-15 2024-07-18 [2] CRAN (R 4.5.1)
## IRanges 2.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## IRdisplay 1.1 2022-01-04 [2] CRAN (R 4.5.1)
## IRkernel 1.3.2 2023-01-20 [2] CRAN (R 4.5.1)
## irlba 2.3.5.1 2022-10-03 [2] CRAN (R 4.5.1)
## irr 0.84.1 2019-01-26 [2] CRAN (R 4.5.1)
## isa2 0.3.6 2023-02-21 [2] CRAN (R 4.5.1)
## ISAnalytics 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iscream 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iSEE 2.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iSEEde 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iSEEfier 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iSEEhex 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iSEEhub 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iSEEindex 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iSEEpathways 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iSEEtree 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iSEEu 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iSeq 1.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ISLET 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## islify 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Iso 0.0-21 2023-10-02 [2] CRAN (R 4.5.1)
## isoband 0.2.7 2022-12-20 [2] CRAN (R 4.5.1)
## isobar 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## IsoBayes 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ISOcodes 2025.05.18 2025-05-18 [2] CRAN (R 4.5.1)
## IsoCorrectoR 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## IsoCorrectoRGUI 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## IsoformSwitchAnalyzeR 2.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ISoLDE 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## isomiRs 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## isotree 0.6.1-4 2025-01-08 [2] CRAN (R 4.5.1)
## isva 1.9 2017-01-14 [2] CRAN (R 4.5.1)
## ITALICS 2.70.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ITALICSData 2.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## iterativeBMA 1.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iterativeBMAsurv 1.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## iterators 1.0.14 2022-02-05 [2] CRAN (R 4.5.1)
## itertools 0.1-3 2014-03-12 [2] CRAN (R 4.5.1)
## IVAS 2.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ivygapSE 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## IWTomics 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Iyer517 1.52.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## JADE 2.0-4 2023-09-17 [2] CRAN (R 4.5.1)
## janeaustenr 1.0.0 2022-08-26 [2] CRAN (R 4.5.1)
## janitor 2.2.1 2024-12-22 [2] CRAN (R 4.5.1)
## JASPAR2014 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## JASPAR2016 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## JASPAR2018 1.1.1 2025-09-10 [2] Bioconductor
## JASPAR2020 0.99.10 2025-10-30 [2] Bioconductor
## JASPAR2022 0.99.8 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## JASPAR2024 0.99.7 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## jazzPanda 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## JohnsonKinaseData 1.6.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## jomo 2.7-6 2023-04-15 [2] CRAN (R 4.5.1)
## jose 1.2.1 2024-10-04 [2] CRAN (R 4.5.1)
## jpeg 0.1-11 2025-03-21 [2] CRAN (R 4.5.1)
## jquerylib 0.1.4 2021-04-26 [2] CRAN (R 4.5.1)
## jsonify 1.2.2 2022-11-09 [2] CRAN (R 4.5.1)
## jsonlite 2.0.0 2025-03-27 [2] CRAN (R 4.5.1)
## jsonvalidate 1.5.0 2025-02-07 [2] CRAN (R 4.5.1)
## juicyjuice 0.1.0 2022-11-10 [2] CRAN (R 4.5.1)
## kableExtra 1.4.0 2024-01-24 [2] CRAN (R 4.5.1)
## karyoploteR 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## katdetectr 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## KBoost 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## KCsmart 2.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## kde1d 1.1.1 2025-06-12 [2] CRAN (R 4.5.1)
## kebabs 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## KEGGandMetacoreDzPathwaysGEO 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## KEGGdzPathwaysGEO 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## KEGGgraph 1.70.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## KEGGlincs 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## keggorthology 2.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## KEGGREST 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Kendall 2.2.1 2022-03-20 [2] CRAN (R 4.5.1)
## keras 2.16.0 2025-08-18 [2] CRAN (R 4.5.1)
## KernelKnn 1.1.6 2025-09-15 [2] CRAN (R 4.5.1)
## kernelshap 0.9.1 2025-09-20 [2] CRAN (R 4.5.1)
## kernlab 0.9-33 2024-08-13 [2] CRAN (R 4.5.1)
## KernSmooth 2.23-26 2025-01-01 [3] CRAN (R 4.5.1)
## kerntools 1.2.0 2025-02-19 [2] CRAN (R 4.5.1)
## keys 0.1.1 2021-07-11 [2] CRAN (R 4.5.1)
## kidpack 1.52.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## kinship2 1.9.6.2 2025-09-04 [2] CRAN (R 4.5.1)
## KinSwingR 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## kissDE 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## kknn 1.4.1 2025-05-19 [2] CRAN (R 4.5.1)
## klaR 1.7-3 2023-12-13 [2] CRAN (R 4.5.1)
## km.ci 0.5-6 2022-04-06 [2] CRAN (R 4.5.1)
## kmcut 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## kmer 1.1.2 2019-05-20 [2] CRAN (R 4.5.1)
## KMsurv 0.1-6 2025-05-20 [2] CRAN (R 4.5.1)
## knitcitations 1.0.12 2021-01-10 [2] CRAN (R 4.5.1)
## knitr 1.50 2025-03-16 [2] CRAN (R 4.5.1)
## knitrBootstrap 1.0.3 2024-02-06 [2] CRAN (R 4.5.1)
## knn.covertree 1.0 2019-10-28 [2] CRAN (R 4.5.1)
## knnmi 1.0 2024-04-02 [2] CRAN (R 4.5.1)
## KnowSeq 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## knowYourCG 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## KOdata 1.36.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## kohonen 3.0.12 2023-06-09 [2] CRAN (R 4.5.1)
## koinar 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## koRpus 0.13-8 2021-05-17 [2] CRAN (R 4.5.1)
## koRpus.lang.en 0.1-4 2020-10-24 [2] CRAN (R 4.5.1)
## kpeaks 1.1.0 2020-02-08 [2] CRAN (R 4.5.1)
## kriging 1.2 2022-06-24 [2] CRAN (R 4.5.1)
## ks 1.15.1 2025-05-04 [2] CRAN (R 4.5.1)
## kSamples 1.2-12 2025-08-26 [2] CRAN (R 4.5.1)
## labdsv 2.1-2 2025-07-31 [2] CRAN (R 4.5.1)
## labeling 0.4.3 2023-08-29 [2] CRAN (R 4.5.1)
## labelled 2.16.0 2025-10-22 [2] CRAN (R 4.5.1)
## LACE 2.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## laeken 0.5.3 2024-01-25 [2] CRAN (R 4.5.1)
## lambda.r 1.2.4 2019-09-18 [2] CRAN (R 4.5.1)
## LambertW 0.6.9-2 2025-08-21 [2] CRAN (R 4.5.1)
## lamW 2.2.5 2025-07-08 [2] CRAN (R 4.5.1)
## LaplacesDemon 16.1.6 2021-07-09 [2] CRAN (R 4.5.1)
## lars 1.3 2022-04-13 [2] CRAN (R 4.5.1)
## later 1.4.4 2025-08-27 [2] CRAN (R 4.5.1)
## latex2exp 0.9.6 2022-11-28 [2] CRAN (R 4.5.1)
## lattice 0.22-7 2025-04-02 [3] CRAN (R 4.5.1)
## latticeExtra 0.6-31 2025-09-10 [2] CRAN (R 4.5.1)
## lava 1.8.2 2025-10-30 [2] CRAN (R 4.5.1)
## lavaan 0.6-20 2025-09-21 [2] CRAN (R 4.5.1)
## lazyeval 0.2.2 2019-03-15 [2] CRAN (R 4.5.1)
## LBE 1.78.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## lbfgs 1.2.1.2 2022-06-23 [2] CRAN (R 4.5.1)
## ldblock 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## LDlinkR 1.4.0 2024-04-10 [2] CRAN (R 4.5.1)
## LEA 3.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## leafem 0.2.5 2025-08-28 [2] CRAN (R 4.5.1)
## leafgl 0.2.2 2024-11-13 [2] CRAN (R 4.5.1)
## leaflegend 1.2.1 2024-05-09 [2] CRAN (R 4.5.1)
## leaflet 2.2.3 2025-09-04 [2] CRAN (R 4.5.1)
## leaflet.providers 2.0.0 2023-10-17 [2] CRAN (R 4.5.1)
## leafsync 0.1.0 2019-03-05 [2] CRAN (R 4.5.1)
## leaps 3.2 2024-06-10 [2] CRAN (R 4.5.1)
## LearnBayes 2.15.1 2018-03-18 [2] CRAN (R 4.5.1)
## learnr 0.11.5 2023-09-28 [2] CRAN (R 4.5.1)
## LedPred 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## leeBamViews 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## lefser 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## LegATo 1.4.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## leiden 0.4.3.1 2023-11-17 [2] CRAN (R 4.5.1)
## leidenAlg 1.1.5 2025-04-19 [2] CRAN (R 4.5.1)
## leidenbase 0.1.35 2025-04-02 [2] CRAN (R 4.5.1)
## lemur 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## les 1.60.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## leukemiasEset 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## levi 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## lexicon 1.2.1 2019-03-21 [2] CRAN (R 4.5.1)
## lfa 2.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## lfda 1.1.3 2019-07-31 [2] CRAN (R 4.5.1)
## lgr 0.5.0 2025-07-23 [2] CRAN (R 4.5.1)
## Lheuristic 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## lhs 1.2.0 2024-06-30 [2] CRAN (R 4.5.1)
## libcoin 1.0-10 2023-09-27 [2] CRAN (R 4.5.1)
## LiblineaR 2.10-24 2024-09-13 [2] CRAN (R 4.5.1)
## LiebermanAidenHiC2009 0.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## lifecycle 1.0.4 2023-11-07 [2] CRAN (R 4.5.1)
## liftOver 1.33.1 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## lime 0.5.3 2022-08-19 [2] CRAN (R 4.5.1)
## limma 3.66.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## limmaGUI 1.86.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## limpa 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## limpca 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## LimROTS 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## limSolve 2.0.1 2025-06-24 [2] CRAN (R 4.5.1)
## lineagespot 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## LinkHD 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## linkSet 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Linnorm 2.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## linprog 0.9-4 2022-03-09 [2] CRAN (R 4.5.1)
## LinTInd 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## lintr 3.2.0 2025-02-12 [2] CRAN (R 4.5.1)
## lionessR 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## lipidr 2.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## LipidTrend 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## LiquidAssociation 1.64.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## lisaClust 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## listenv 0.10.0 2025-11-02 [2] CRAN (R 4.5.1)
## ListerEtAlBSseq 1.42.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## listviewer 4.0.0 2023-09-30 [2] CRAN (R 4.5.1)
## litedown 0.8 2025-11-02 [2] CRAN (R 4.5.1)
## liver 1.24 2025-10-24 [2] CRAN (R 4.5.1)
## lmdme 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## lme4 1.1-37 2025-03-26 [2] CRAN (R 4.5.1)
## lmerTest 3.1-3 2020-10-23 [2] CRAN (R 4.5.1)
## lmodel2 1.7-4 2024-12-05 [2] CRAN (R 4.5.1)
## lmom 3.2 2024-09-30 [2] CRAN (R 4.5.1)
## Lmoments 1.3-2 2025-09-18 [2] CRAN (R 4.5.1)
## lmtest 0.9-40 2022-03-21 [2] CRAN (R 4.5.1)
## LOBSTAHS 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## lobstr 1.1.2 2022-06-22 [2] CRAN (R 4.5.1)
## locfdr 1.1-8 2015-07-15 [2] CRAN (R 4.5.1)
## locfit 1.5-9.12 2025-03-05 [2] CRAN (R 4.5.1)
## loci2path 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## locStra 1.9 2022-04-12 [2] CRAN (R 4.5.1)
## log4r 0.4.4 2024-10-12 [2] CRAN (R 4.5.1)
## logger 0.4.1 2025-09-11 [2] CRAN (R 4.5.1)
## logging 0.10-108 2019-07-14 [2] CRAN (R 4.5.1)
## logicFS 2.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## LogicReg 1.6.6 2023-08-08 [2] CRAN (R 4.5.1)
## logistf 1.26.1 2025-04-16 [2] CRAN (R 4.5.1)
## logitnorm 0.8.39 2024-01-24 [2] CRAN (R 4.5.1)
## logNormReg 0.5-0 2021-11-08 [2] CRAN (R 4.5.1)
## logr 1.3.9 2025-03-26 [2] CRAN (R 4.5.1)
## lokern 1.1-12 2024-07-30 [2] CRAN (R 4.5.1)
## LOLA 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## longitudinal 1.1.13 2021-11-13 [2] CRAN (R 4.5.1)
## loo 2.8.0 2024-07-03 [2] CRAN (R 4.5.1)
## looking4clusters 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## LoomExperiment 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## LPE 1.84.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## lpNet 2.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## lpSolve 5.6.23 2024-12-14 [2] CRAN (R 4.5.1)
## lpSolveAPI 5.5.2.0-17.14 2025-04-14 [2] CRAN (R 4.5.1)
## lpsymphony 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## LRBaseDbi 2.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## LRcell 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## LRcellTypeMarkers 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## lsa 0.73.3 2022-05-09 [2] CRAN (R 4.5.1)
## LSD 4.1-0 2020-06-17 [2] CRAN (R 4.5.1)
## lsr 0.5.2 2021-12-01 [2] CRAN (R 4.5.1)
## lubridate 1.9.4 2024-12-08 [2] CRAN (R 4.5.1)
## lumi 2.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## lumiBarnes 1.50.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## lumiHumanAll.db 1.22.0 2025-09-10 [2] Bioconductor
## lumiHumanIDMapping 1.10.1 2025-09-10 [2] Bioconductor
## LungCancerACvsSCCGEO 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## LungCancerLines 0.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## lungExpression 0.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## lute 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## lwgeom 0.2-14 2024-02-21 [2] CRAN (R 4.5.1)
## lydata 1.36.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## LymphoSeq 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## LymphoSeqDB 0.99.2 2025-09-10 [2] Bioconductor
## M3C 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## M3DExampleData 1.36.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## M3Drop 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## m6Aboost 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Maaslin2 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## maaslin3 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Macarron 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## maCorrPlot 1.80.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## macrophage 1.26.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## MACSdata 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## MACSQuantifyR 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MACSr 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## made4 1.84.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## maEndToEnd 2.29.0 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## MafDb.1Kgenomes.phase1.hs37d5 3.10.0 2025-09-10 [2] Bioconductor
## MafDb.1Kgenomes.phase3.GRCh38 3.10.0 2025-09-10 [2] Bioconductor
## MafDb.1Kgenomes.phase3.hs37d5 3.10.0 2025-09-10 [2] Bioconductor
## MafDb.ExAC.r1.0.hs37d5 3.10.0 2025-09-10 [2] Bioconductor
## MafDb.gnomADex.r2.1.hs37d5 3.10.0 2025-09-10 [2] Bioconductor
## MafH5.gnomAD.v4.0.GRCh38 3.19.0 2025-09-10 [2] Bioconductor
## maftools 2.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MAGAR 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## magic 1.6-1 2022-11-16 [2] CRAN (R 4.5.1)
## magicaxis 2.5.1 2025-09-02 [2] CRAN (R 4.5.1)
## magick 2.9.0 2025-09-08 [2] CRAN (R 4.5.1)
## magpie 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## magrene 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## magrittr 2.0.4 2025-09-12 [2] CRAN (R 4.5.1)
## MAI 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MAIT 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## makecdfenv 1.86.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MALDIquant 1.22.3 2024-08-19 [2] CRAN (R 4.5.1)
## MALDIquantForeign 0.14.1 2024-01-22 [2] CRAN (R 4.5.1)
## mammaPrintData 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## manipulateWidget 0.11.1 2021-10-05 [2] CRAN (R 4.5.1)
## MANOR 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MantelCorr 1.80.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MAPFX 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mapplots 1.5.3 2025-06-26 [2] CRAN (R 4.5.1)
## mapproj 1.2.12 2025-05-19 [2] CRAN (R 4.5.1)
## maPredictDSC 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## maps 3.4.3 2025-05-26 [2] CRAN (R 4.5.1)
## mapscape 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## maptiles 0.10.0 2025-05-07 [2] CRAN (R 4.5.1)
## maptree 1.4-9 2025-07-22 [2] CRAN (R 4.5.1)
## maqcExpression4plex 1.54.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## MAQCsubset 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## mariner 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## marinerData 1.10.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## markdown 2.0 2025-03-23 [2] CRAN (R 4.5.1)
## markeR 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## marr 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## marray 1.88.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## martini 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## maser 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mashr 0.2.79 2023-10-18 [2] CRAN (R 4.5.1)
## maSigPro 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## maskBAD 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MASS 7.3-65 2025-02-28 [3] CRAN (R 4.5.1)
## MassArray 1.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## massiR 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MassSpecWavelet 1.76.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MAST 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mastR 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## matchBox 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## matchingR 2.0.0 2025-09-23 [2] CRAN (R 4.5.1)
## MatchIt 4.7.2 2025-05-30 [2] CRAN (R 4.5.1)
## mathjaxr 1.8-0 2025-04-30 [2] CRAN (R 4.5.1)
## matlab 1.0.4.1 2024-07-01 [2] CRAN (R 4.5.1)
## Matrix 1.7-4 2025-08-28 [3] CRAN (R 4.5.1)
## matrixcalc 1.0-6 2022-09-14 [2] CRAN (R 4.5.1)
## MatrixCorrelation 0.10.1 2025-07-28 [2] CRAN (R 4.5.1)
## MatrixEQTL 2.3 2019-12-22 [2] CRAN (R 4.5.1)
## MatrixExtra 0.1.15 2024-01-22 [2] CRAN (R 4.5.1)
## MatrixGenerics 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MatrixModels 0.5-4 2025-03-26 [2] CRAN (R 4.5.1)
## MatrixQCvis 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MatrixRider 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## matrixStats 1.5.0 2025-01-07 [2] CRAN (R 4.5.1)
## matrixTests 0.2.3.1 2025-10-17 [2] CRAN (R 4.5.1)
## matter 2.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## maxLik 1.5-2.1 2024-03-24 [2] CRAN (R 4.5.1)
## maxstat 0.7-26 2025-05-02 [2] CRAN (R 4.5.1)
## MBA 0.1-2 2024-09-23 [2] CRAN (R 4.5.1)
## MBAmethyl 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MBASED 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MBCB 1.64.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MBECS 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mbest 0.6.1 2025-04-24 [2] CRAN (R 4.5.1)
## mbkmeans 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mboost 2.9-11 2024-08-22 [2] CRAN (R 4.5.1)
## mBPCR 1.64.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MBQN 2.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mbQTL 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MBttest 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MCbiclust 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mcbiopi 1.1.6 2018-10-06 [2] CRAN (R 4.5.1)
## MCL 1.0 2015-03-11 [2] CRAN (R 4.5.1)
## mclust 6.1.2 2025-10-31 [2] CRAN (R 4.5.1)
## mclustcomp 0.3.5 2025-09-22 [2] CRAN (R 4.5.1)
## mcmc 0.9-8 2023-11-16 [2] CRAN (R 4.5.1)
## MCMCglmm 2.36 2024-05-06 [2] CRAN (R 4.5.1)
## MCMCpack 1.7-1 2024-08-27 [2] CRAN (R 4.5.1)
## MCMCprecision 0.4.2 2025-07-22 [2] CRAN (R 4.5.1)
## mco 1.17 2024-08-19 [2] CRAN (R 4.5.1)
## mcprogress 0.1.1 2024-09-26 [2] CRAN (R 4.5.1)
## mcr 1.3.3.1 2024-09-23 [2] CRAN (R 4.5.1)
## mCSEA 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mCSEAdata 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## mcsurvdata 1.28.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## mdendro 2.2.3 2025-09-04 [2] CRAN (R 4.5.1)
## mdp 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mdqc 1.72.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MDTS 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MEAL 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MeasurementError.cor 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MEAT 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MEB 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mediation 4.5.1 2025-06-07 [2] CRAN (R 4.5.1)
## MEDIPS 1.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MEDIPSData 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## MEDME 1.70.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MEEBOdata 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## mefa 3.2-10 2025-07-13 [2] CRAN (R 4.5.1)
## megadepth 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MEIGOR 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Melissa 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## memes 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## memoise 2.0.1 2021-11-26 [2] CRAN (R 4.5.1)
## memuse 4.2-3 2023-01-24 [2] CRAN (R 4.5.1)
## MerfishData 1.12.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## Mergeomics 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MeSHDbi 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## meshes 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## meshr 2.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MesKit 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MESS 0.6.0 2025-09-13 [2] CRAN (R 4.5.1)
## messina 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## meta 8.2-1 2025-09-01 [2] CRAN (R 4.5.1)
## metabCombiner 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## metabinR 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MetaboAnnotation 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MetaboCoreUtils 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MetaboDynamics 2.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## metaboliteIDmapping 1.0.0 2025-10-30 [2] Bioconductor
## metabolomicsWorkbenchR 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## metabomxtr 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MetaboSignal 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## metaCCA 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MetaCycle 1.2.0 2019-04-18 [2] CRAN (R 4.5.1)
## MetaCyto 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## metadat 1.4-0 2025-02-04 [2] CRAN (R 4.5.1)
## MetaDICT 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## metafor 4.8-0 2025-01-28 [2] CRAN (R 4.5.1)
## metagene2 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## metagenomeSeq 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MetaGxBreast 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## MetaGxOvarian 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## MetaGxPancreas 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## metahdep 1.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## metaMS 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## metaMSdata 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## MetaNeighbor 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## metap 1.12 2025-03-15 [2] CRAN (R 4.5.1)
## MetaPhOR 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## metapod 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## metapone 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## metaRNASeq 1.0.8 2025-03-26 [2] CRAN (R 4.5.1)
## MetaScope 1.10.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## metaSeq 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## metaseqR2 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MetBrewer 0.2.0 2022-03-21 [2] CRAN (R 4.5.1)
## MetCirc 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## methimpute 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## methInheritSim 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## methodical 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## methods * 4.5.1 2025-09-10 [3] local
## MethPed 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MethReg 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## methrix 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MethTargetedNGS 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MethylAid 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MethylAidData 1.42.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## methylationArrayAnalysis 1.33.1 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## methylCC 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## methylclock 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## methylclockData 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## methylGSA 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## methyLImp2 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## methylInheritance 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## methylKit 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MethylMix 2.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## methylMnM 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## methylPipe 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## methylscaper 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MethylSeekR 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MethylSeqData 1.20.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## methylSig 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## methylumi 2.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MetID 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MetMashR 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MetNet 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## metR 0.18.2 2025-09-05 [2] CRAN (R 4.5.1)
## metrica 2.1.0 2024-06-30 [2] CRAN (R 4.5.1)
## Metrics 0.1.4 2018-07-09 [2] CRAN (R 4.5.1)
## mets 1.3.8 2025-10-21 [2] CRAN (R 4.5.1)
## mfa 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Mfuzz 2.70.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mgcv 1.9-3 2025-04-04 [3] CRAN (R 4.5.1)
## MGFM 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MGFR 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MGLM 0.2.1 2022-04-13 [2] CRAN (R 4.5.1)
## MGnifyR 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mgsa 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mgsub 1.7.3 2021-07-28 [2] CRAN (R 4.5.1)
## mhsmm 0.4.21 2023-08-23 [2] CRAN (R 4.5.1)
## mia 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## miaDash 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## miaSim 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## miaTime 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## miaViz 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mice 3.18.0 2025-05-27 [2] CRAN (R 4.5.1)
## miceadds 3.18-36 2025-09-12 [2] CRAN (R 4.5.1)
## MiChip 1.64.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## microbenchmark 1.5.0 2024-09-04 [2] CRAN (R 4.5.1)
## microbiome 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MicrobiomeBenchmarkData 1.12.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## microbiomeDASim 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## microbiomeDataSets 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## microbiomeExplorer 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MicrobiomeProfiler 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MicrobiomeStat 1.2 2024-04-01 [2] CRAN (R 4.5.1)
## MicrobiotaProcess 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## microRNA 1.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## microRNAome 1.32.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## microSTASIS 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MICSQTL 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## midasHLA 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## miloR 2.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mimager 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mime 0.13 2025-03-17 [2] CRAN (R 4.5.1)
## mina 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MineICA 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## minerva 1.5.10 2021-06-17 [2] CRAN (R 4.5.1)
## minet 3.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## minfi 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## minfiData 0.56.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## minfiDataEPIC 1.36.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## MinimumDistance 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## minionSummaryData 1.40.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## miniUI 0.1.2 2025-04-17 [2] CRAN (R 4.5.1)
## minpack.lm 1.2-4 2023-09-11 [2] CRAN (R 4.5.1)
## minqa 1.2.8 2024-08-17 [2] CRAN (R 4.5.1)
## minty 0.0.5 2025-01-07 [2] CRAN (R 4.5.1)
## MiPP 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## miQC 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MIRA 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MiRaGE 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mirai 2.5.1 2025-10-06 [2] CRAN (R 4.5.1)
## miRBaseConverter 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## miRBaseVersions.db 1.1.0 2025-09-10 [2] Bioconductor
## miRcomp 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## miRcompData 1.40.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## mirIntegrator 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MIRit 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## miRLAB 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mirna10cdf 2.18.0 2025-09-10 [2] Bioconductor
## miRNAmeConverter 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## miRNApath 1.70.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## miRNAtap 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## miRNAtap.db 0.99.10 2025-09-10 [2] Bioconductor
## miRNATarget 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## miRSM 2.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## miRspongeR 2.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mirTarRnaSeq 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## misc3d 0.9-1 2021-10-07 [2] CRAN (R 4.5.1)
## miscTools 0.6-28 2023-05-03 [2] CRAN (R 4.5.1)
## missForest 1.6.1 2025-10-26 [2] CRAN (R 4.5.1)
## missMDA 1.20 2025-07-23 [2] CRAN (R 4.5.1)
## missMethyl 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## missRows 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mist 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mistyR 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mitch 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mitml 0.4-5 2023-03-08 [2] CRAN (R 4.5.1)
## mitoClone2 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mitology 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mitools 2.4 2019-04-26 [2] CRAN (R 4.5.1)
## mixOmics 6.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mixsmsn 1.1-11 2025-04-23 [2] CRAN (R 4.5.1)
## mixsqp 0.3-54 2023-12-20 [2] CRAN (R 4.5.1)
## mixtools 2.0.0.1 2025-03-08 [2] CRAN (R 4.5.1)
## MKdescr 0.9 2025-09-10 [2] CRAN (R 4.5.1)
## MKinfer 1.2 2024-04-06 [2] CRAN (R 4.5.1)
## MKmisc 1.9 2022-11-19 [2] CRAN (R 4.5.1)
## mlapi 0.1.1 2022-04-24 [2] CRAN (R 4.5.1)
## mlbench 2.1-6 2024-12-30 [2] CRAN (R 4.5.1)
## MLeval 0.3 2020-02-12 [2] CRAN (R 4.5.1)
## MLInterfaces 1.90.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MLP 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mlr 2.19.3 2025-08-22 [2] CRAN (R 4.5.1)
## mlr3 1.2.0 2025-09-13 [2] CRAN (R 4.5.1)
## mlr3learners 0.13.0 2025-10-02 [2] CRAN (R 4.5.1)
## mlr3measures 1.1.0 2025-09-04 [2] CRAN (R 4.5.1)
## mlr3misc 0.19.0 2025-09-12 [2] CRAN (R 4.5.1)
## mlr3tuning 1.4.0 2025-06-04 [2] CRAN (R 4.5.1)
## mlrMBO 1.1.5.1 2022-07-04 [2] CRAN (R 4.5.1)
## MLSeq 2.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mltools 0.3.5 2018-05-12 [2] CRAN (R 4.5.1)
## mmand 1.6.3 2023-02-07 [2] CRAN (R 4.5.1)
## MMDiff2 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MMDiffBamSubset 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## MMUPHin 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mnem 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mnormt 2.1.1 2022-09-26 [2] CRAN (R 4.5.1)
## moanin 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mobileRNA 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mockery 0.4.5 2025-09-04 [2] CRAN (R 4.5.1)
## mockr 0.2.2 2025-05-01 [2] CRAN (R 4.5.1)
## MODA 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ModCon 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## modeest 2.4.0 2019-11-18 [2] CRAN (R 4.5.1)
## ModelMetrics 1.2.2.2 2020-03-17 [2] CRAN (R 4.5.1)
## modelr 0.1.11 2023-03-22 [2] CRAN (R 4.5.1)
## modeltools 0.2-24 2025-05-02 [2] CRAN (R 4.5.1)
## Modstrings 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MOFA2 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MOFAdata 1.26.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## MOGAMUN 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mogsa 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MoleculeExperiment 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MOMA 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## moments 0.14.1 2022-05-02 [2] CRAN (R 4.5.1)
## monaLisa 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## monocle 2.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MonoPoly 0.3-10 2019-04-24 [2] CRAN (R 4.5.1)
## Moonlight2R 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MoonlightR 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mosaicCore 0.9.5 2025-07-30 [2] CRAN (R 4.5.1)
## mosaics 2.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mosaicsExample 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## mosbi 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MOSClip 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mosdef 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MOSim 2.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Motif2Site 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## motifbreakR 2.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## motifcounter 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MotifDb 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## motifmatchr 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MotifPeeker 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## motifStack 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## motifTestR 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mouse4302.db 3.13.0 2025-09-10 [2] Bioconductor
## mouse4302barcodevecs 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## mouse4302cdf 2.18.0 2025-09-10 [2] Bioconductor
## mouse4302frmavecs 1.5.0 2025-09-10 [2] Bioconductor
## MouseAgingData 1.6.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## MouseFM 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MouseGastrulationData 1.24.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## MouseThymusAgeing 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## MPAC 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mpath 0.4-2.26 2024-06-27 [2] CRAN (R 4.5.1)
## MPFE 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mpm 1.0-23 2022-04-01 [2] CRAN (R 4.5.1)
## MPO.db 0.99.8 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## mpra 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MPRAnalyze 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mrfDepth 1.0.17 2024-05-24 [2] CRAN (R 4.5.1)
## mRMRe 2.1.2.2 2024-11-05 [2] CRAN (R 4.5.1)
## msa 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MSA2dist 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MsBackendMassbank 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MsBackendMetaboLights 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MsBackendMgf 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MsBackendMsp 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MsBackendRawFileReader 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MsBackendSql 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MsCoreUtils 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## msd16s 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## msdata 0.50.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## MsDataHub 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## msentropy 0.1.4 2023-08-07 [2] CRAN (R 4.5.1)
## MsExperiment 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MsFeatures 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## msgbsR 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## msgps 1.3.5 2022-10-20 [2] CRAN (R 4.5.1)
## msigdb 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## msigdbr 25.1.1 2025-07-21 [2] CRAN (R 4.5.1)
## msImpute 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mslp 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## msm 1.8.2 2024-11-07 [2] CRAN (R 4.5.1)
## MSMB 1.28.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## msmsEDA 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## msmsTests 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MSnbase 2.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MSnID 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mspms 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MSPrep 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## msPurity 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## msPurityData 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## msqc1 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## msqrob2 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MsQuality 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MSstats 4.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MSstatsBig 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MSstatsBioNet 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MSstatsConvert 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MSstatsLiP 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MSstatsLOBD 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MSstatsPTM 2.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MSstatsQC 2.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MSstatsQCgui 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MSstatsResponse 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MSstatsShiny 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MSstatsTMT 2.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mstate 0.3.3 2024-07-11 [2] CRAN (R 4.5.1)
## mtbls2 1.40.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## MTLR 0.2.1 2019-06-03 [2] CRAN (R 4.5.1)
## MuData 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MUGAExampleData 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## Mulcom 1.60.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## muleaData 1.6.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## multcomp 1.4-29 2025-10-20 [2] CRAN (R 4.5.1)
## multcompView 0.1-10 2024-03-08 [2] CRAN (R 4.5.1)
## MultiAssayExperiment 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MultiBaC 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## multiClust 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## multicool 1.0.1 2024-02-05 [2] CRAN (R 4.5.1)
## multicrispr 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MultiDataSet 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## multiGSEA 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## multiHiCcompare 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MultiMed 2.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## multiMiR 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MultimodalExperiment 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## multinet 4.3.2 2025-10-24 [2] CRAN (R 4.5.1)
## MultiRNAflow 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## multiscan 1.70.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## multistateQTL 2.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## multitaper 1.0-17 2023-07-20 [2] CRAN (R 4.5.1)
## multiWGCNA 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## multiWGCNAdata 1.8.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## multtest 2.66.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MuMIn 1.48.11 2025-04-01 [2] CRAN (R 4.5.1)
## mumosa 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MungeSumstats 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Mus.musculus 1.3.1 2025-09-10 [2] Bioconductor
## muscat 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## muscData 1.24.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## muscle 3.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## musicatk 2.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## muSpaData 1.2.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## MutationalPatterns 3.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mutoss 0.1-13 2023-03-14 [2] CRAN (R 4.5.1)
## mutscan 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## MUVR2 0.1.0 2024-09-16 [2] CRAN (R 4.5.1)
## MVCClass 1.84.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mvnfast 0.2.8 2023-02-23 [2] CRAN (R 4.5.1)
## mvoutData 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## mvoutlier 2.1.1 2021-07-30 [2] CRAN (R 4.5.1)
## mvtnorm 1.3-3 2025-01-10 [2] CRAN (R 4.5.1)
## MWASTools 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mwcsr 0.1.9 2024-09-09 [2] CRAN (R 4.5.1)
## mycor 0.1.1 2018-04-10 [2] CRAN (R 4.5.1)
## mygene 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## myvariant 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mzID 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## mzR 2.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## nabor 0.5.0 2018-07-11 [2] CRAN (R 4.5.1)
## NADfinder 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## naivebayes 1.0.0 2024-03-16 [2] CRAN (R 4.5.1)
## naniar 1.1.0 2024-03-05 [2] CRAN (R 4.5.1)
## nanoarrow 0.7.0-1 2025-09-24 [2] CRAN (R 4.5.1)
## NanoMethViz 3.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## nanonext 1.7.1 2025-10-01 [2] CRAN (R 4.5.1)
## nanoparquet 0.4.2 2025-02-22 [2] CRAN (R 4.5.1)
## NanoporeRNASeq 1.20.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## NanoStringDiff 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## NanoStringNCTools 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## nanotime 0.3.12 2025-04-02 [2] CRAN (R 4.5.1)
## NanoTube 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## nanotubes 1.26.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## nat 1.8.25 2025-08-18 [2] CRAN (R 4.5.1)
## nat.utils 0.6.1 2023-06-07 [2] CRAN (R 4.5.1)
## naturalsort 0.1.3 2016-08-30 [2] CRAN (R 4.5.1)
## NBAMSeq 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## NbClust 3.0.1 2022-05-02 [2] CRAN (R 4.5.1)
## NBPSeq 0.3.1 2022-06-09 [2] CRAN (R 4.5.1)
## ncdf4 1.24 2025-03-25 [2] CRAN (R 4.5.1)
## ncdfFlow 2.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ncGTW 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## NCIgraph 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## NCIgraphData 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## NCmisc 1.2.0 2022-10-17 [2] CRAN (R 4.5.1)
## ncRNAtools 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ndexr 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## nearBynding 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Nebulosa 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## nempi 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## neo4r 0.1.1 2019-02-15 [2] CRAN (R 4.5.1)
## NestLink 1.26.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## NetActivity 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## NetActivityData 1.12.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## netboost 2.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## netgsa 4.0.6 2025-07-30 [2] CRAN (R 4.5.1)
## nethet 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## NetPathMiner 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## netprioR 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## NetRep 1.2.9 2025-10-23 [2] CRAN (R 4.5.1)
## netresponse 1.70.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## NetSAM 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## netSmooth 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## network 1.19.0 2024-12-09 [2] CRAN (R 4.5.1)
## networkD3 0.4.1 2025-04-14 [2] CRAN (R 4.5.1)
## Neve2006 0.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## NewWave 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## NGLVieweR 1.4.0 2024-11-22 [2] CRAN (R 4.5.1)
## NGScopyData 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ngsReports 2.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## NHPoisson 3.3 2020-02-19 [2] CRAN (R 4.5.1)
## nipals 1.0 2024-12-02 [2] CRAN (R 4.5.1)
## nipalsMCIA 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## NISTunits 1.0.1 2016-08-11 [2] CRAN (R 4.5.1)
## nlcv 0.3.6 2025-05-06 [2] CRAN (R 4.5.1)
## nleqslv 3.3.5 2023-11-26 [2] CRAN (R 4.5.1)
## nlme 3.1-168 2025-03-31 [3] CRAN (R 4.5.1)
## nloptr 2.2.1 2025-03-17 [2] CRAN (R 4.5.1)
## NLP 0.3-2 2024-11-20 [2] CRAN (R 4.5.1)
## nls2 0.3-4 2024-07-14 [2] CRAN (R 4.5.1)
## NMF 0.28 2024-08-22 [2] CRAN (R 4.5.1)
## NMFN 2.0.1 2022-06-23 [2] CRAN (R 4.5.1)
## NMI 2.0 2016-08-20 [2] CRAN (R 4.5.1)
## nmrdata 1.0.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## NMRphasing 1.0.7 2025-06-24 [2] CRAN (R 4.5.1)
## nnet 7.3-20 2025-01-01 [3] CRAN (R 4.5.1)
## nnlasso 0.3 2016-03-10 [2] CRAN (R 4.5.1)
## nnls 1.6 2024-10-23 [2] CRAN (R 4.5.1)
## nnNorm 2.74.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## nnSVG 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## nnTensor 1.3.0 2024-05-13 [2] CRAN (R 4.5.1)
## NOISeq 2.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## nondetects 2.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## nor1mix 1.3-3 2024-04-06 [2] CRAN (R 4.5.1)
## NoRCE 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## norm 1.0-11.1 2023-06-18 [2] CRAN (R 4.5.1)
## normalize450K 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## NormalyzerDE 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## NormqPCR 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## normr 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## nortest 1.0-4 2015-07-30 [2] CRAN (R 4.5.1)
## notame 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## notameStats 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## notameViz 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## np 0.60-18 2024-12-10 [2] CRAN (R 4.5.1)
## NPARC 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## npGSEA 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## nsga2R 1.1 2022-05-23 [2] CRAN (R 4.5.1)
## NTW 1.60.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## nucleoSim 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## nucleR 2.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## nuCpos 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## nullranges 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## nullrangesData 1.16.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## numbers 0.8-5 2022-11-23 [2] CRAN (R 4.5.1)
## numDeriv 2016.8-1.1 2019-06-06 [2] CRAN (R 4.5.1)
## NuPoP 2.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## NxtIRFdata 1.16.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## objectProperties 0.6.8 2022-05-02 [2] CRAN (R 4.5.1)
## objectSignals 0.10.3 2022-04-05 [2] CRAN (R 4.5.1)
## ObMiTi 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## occugene 1.70.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## OCplus 1.84.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## oct4 1.26.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## octad 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## octad.db 1.12.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## odseq 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## officer 0.7.0 2025-09-03 [2] CRAN (R 4.5.1)
## OGRE 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## OHCA 1.6.0 2025-11-03 [2] Bioconductor 3.22 (R 4.5.1)
## oligo 1.74.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## oligoClasses 1.72.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## oligoData 1.8.0 2025-09-10 [2] Bioconductor
## OLIN 1.88.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## OLINgui 1.84.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## OlinkAnalyze 4.3.2 2025-09-24 [2] CRAN (R 4.5.1)
## omada 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## OmaDB 2.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## omicade4 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## OmicCircos 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## omicplotR 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## omicRexposome 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## omicsGMF 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## OmicsMLRepoR 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## OMICsPCA 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## OMICsPCAdata 1.28.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## omicsPrint 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## omicsViewer 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Omixer 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## OmnipathR 3.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ompBAM 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## omXplore 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## OnassisJavaLibs 1.32.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## oncomix 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## oncoscanR 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## OncoScore 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## OncoSimulR 4.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Oncotree 0.3.5 2023-09-27 [2] CRAN (R 4.5.1)
## onlineFDR 2.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ontologyIndex 2.12 2024-02-27 [2] CRAN (R 4.5.1)
## ontologyPlot 1.7 2024-02-20 [2] CRAN (R 4.5.1)
## ontoProc 2.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ontoProcData 0.99.9904 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## openair 2.19.0 2025-08-28 [2] CRAN (R 4.5.1)
## opencpu 2.2.14 2024-10-04 [2] CRAN (R 4.5.1)
## openCyto 2.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## openEBGM 0.9.1 2023-09-14 [2] CRAN (R 4.5.1)
## openPrimeR 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## openssl 2.3.4 2025-09-30 [2] CRAN (R 4.5.1)
## OpenStats 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## openxlsx 4.2.8.1 2025-10-31 [2] CRAN (R 4.5.1)
## operator.tools 1.6.3 2017-02-28 [2] CRAN (R 4.5.1)
## oposSOM 2.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## oppar 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## oppti 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## optimalFlow 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## optimalFlowData 1.22.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## optimParallel 1.0-2 2021-02-11 [2] CRAN (R 4.5.1)
## optimx 2025-4.9 2025-04-10 [2] CRAN (R 4.5.1)
## optparse 1.7.5 2024-04-16 [2] CRAN (R 4.5.1)
## OPWeight 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## OrderedList 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ordinal 2023.12-4.1 2024-08-19 [2] CRAN (R 4.5.1)
## ore 1.7.5.1 2025-03-14 [2] CRAN (R 4.5.1)
## ORFhunteR 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ORFik 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## org.Ag.eg.db 3.22.0 2025-10-08 [2] Bioconductor
## org.At.tair.db 3.22.0 2025-10-08 [2] Bioconductor
## org.Bt.eg.db 3.22.0 2025-10-08 [2] Bioconductor
## org.Ce.eg.db 3.22.0 2025-10-08 [2] Bioconductor
## org.Cf.eg.db 3.22.0 2025-10-08 [2] Bioconductor
## org.Dm.eg.db 3.22.0 2025-10-08 [2] Bioconductor
## org.Dr.eg.db 3.22.0 2025-10-08 [2] Bioconductor
## org.EcK12.eg.db 3.22.0 2025-10-08 [2] Bioconductor
## org.EcSakai.eg.db 3.22.0 2025-10-08 [2] Bioconductor
## org.Gg.eg.db 3.22.0 2025-10-08 [2] Bioconductor
## org.Hbacteriophora.eg.db 0.99.1 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## org.Hs.eg.db 3.22.0 2025-10-08 [2] Bioconductor
## org.Mm.eg.db 3.22.0 2025-10-08 [2] Bioconductor
## org.Mmu.eg.db 3.22.0 2025-10-08 [2] Bioconductor
## org.Mxanthus.db 1.0.27 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## org.Pt.eg.db 3.22.0 2025-10-08 [2] Bioconductor
## org.Rn.eg.db 3.22.0 2025-10-08 [2] Bioconductor
## org.Sc.sgd.db 3.22.0 2025-10-08 [2] Bioconductor
## org.Ss.eg.db 3.22.0 2025-10-08 [2] Bioconductor
## org.Xl.eg.db 3.22.0 2025-10-08 [2] Bioconductor
## Organism.dplyr 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## OrganismDbi 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## OrgMassSpecR 0.5-3 2017-08-13 [2] CRAN (R 4.5.1)
## origami 1.0.7 2022-10-19 [2] CRAN (R 4.5.1)
## orthogene 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## orthos 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## orthosData 1.8.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## OSAT 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## OSCA 1.20.0 2025-11-03 [2] Bioconductor 3.22 (R 4.5.1)
## OSCA.advanced 1.18.0 2025-11-03 [2] Bioconductor 3.22 (R 4.5.1)
## OSCA.basic 1.18.0 2025-11-03 [2] Bioconductor 3.22 (R 4.5.1)
## OSCA.intro 1.18.0 2025-11-03 [2] Bioconductor 3.22 (R 4.5.1)
## OSCA.multisample 1.18.0 2025-11-03 [2] Bioconductor 3.22 (R 4.5.1)
## OSCA.workflows 1.18.0 2025-11-03 [2] Bioconductor 3.22 (R 4.5.1)
## Oscope 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## osfr 0.2.9 2022-09-25 [2] CRAN (R 4.5.1)
## osqp 0.6.3.3 2024-06-08 [2] CRAN (R 4.5.1)
## OSTA 1.0.0 2025-11-03 [2] Bioconductor 3.22 (R 4.5.1)
## OSTA.data 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## otel 0.2.0 2025-08-29 [2] CRAN (R 4.5.1)
## OTUbase 1.60.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## outliers 0.15 2022-03-26 [2] CRAN (R 4.5.1)
## OUTRIDER 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## OutSplice 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## OVESEG 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PAA 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## packFinder 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## padma 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PADOG 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pageRank 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## paintmap 1.0 2016-08-31 [2] CRAN (R 4.5.1)
## PAIRADISE 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## paircompviz 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PairedData 1.1.1 2018-06-02 [2] CRAN (R 4.5.1)
## pairedGSEA 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pairkat 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pairsD3 0.1.3 2022-06-06 [2] CRAN (R 4.5.1)
## pak 0.9.0 2025-05-27 [2] CRAN (R 4.5.1)
## paletteer 1.6.0 2024-01-21 [2] CRAN (R 4.5.1)
## palmerpenguins 0.1.1 2022-08-15 [2] CRAN (R 4.5.1)
## pals 1.10 2025-03-07 [2] CRAN (R 4.5.1)
## pamr 1.57 2024-07-01 [2] CRAN (R 4.5.1)
## pan 1.9 2023-12-07 [2] CRAN (R 4.5.1)
## pandaR 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pander 0.6.6 2025-03-01 [2] CRAN (R 4.5.1)
## panelcn.mops 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PanomiR 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## panp 1.80.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PANR 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PANTHER.db 1.0.12 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## paradox 1.0.1 2024-07-09 [2] CRAN (R 4.5.1)
## parallel 4.5.1 2025-09-10 [3] local
## parallelDist 0.2.7 2025-09-27 [2] CRAN (R 4.5.1)
## ParallelLogger 3.5.1 2025-10-29 [2] CRAN (R 4.5.1)
## parallelly 1.45.1 2025-07-24 [2] CRAN (R 4.5.1)
## parallelMap 1.5.1 2021-06-28 [2] CRAN (R 4.5.1)
## parameters 0.28.2 2025-09-10 [2] CRAN (R 4.5.1)
## ParamHelpers 1.14.2 2025-01-09 [2] CRAN (R 4.5.1)
## parglms 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## parmigene 1.1.1 2024-10-21 [2] CRAN (R 4.5.1)
## parody 1.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## parsedate 1.3.2 2024-12-09 [2] CRAN (R 4.5.1)
## partCNV 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## party 1.3-18 2025-01-29 [2] CRAN (R 4.5.1)
## partykit 1.2-24 2025-05-02 [2] CRAN (R 4.5.1)
## pasilla 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## pasillaBamSubset 0.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## PasillaTranscriptExpr 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## PAST 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pastecs 1.4.2 2024-02-01 [2] CRAN (R 4.5.1)
## patchwork 1.3.2 2025-08-25 [2] CRAN (R 4.5.1)
## Path2PPI 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pathifier 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pathlinkR 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pathMED 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PathNet 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PathNetData 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## PathoStat 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pathRender 1.78.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pathview 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pathwayPCA 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## patrick 0.3.0 2025-01-27 [2] CRAN (R 4.5.1)
## paws.common 0.8.5 2025-07-25 [2] CRAN (R 4.5.1)
## paws.storage 0.9.0 2025-03-14 [2] CRAN (R 4.5.1)
## pbapply 1.7-4 2025-07-20 [2] CRAN (R 4.5.1)
## pbdZMQ 0.3-14 2025-04-13 [2] CRAN (R 4.5.1)
## pbivnorm 0.6.0 2015-01-23 [2] CRAN (R 4.5.1)
## pbkrtest 0.5.5 2025-07-18 [2] CRAN (R 4.5.1)
## pbmcapply 1.5.1 2022-04-28 [2] CRAN (R 4.5.1)
## pbs 1.1 2013-06-08 [2] CRAN (R 4.5.1)
## pbv 0.5-47 2023-11-30 [2] CRAN (R 4.5.1)
## pcaExplorer 3.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pcalg 2.7-12 2024-09-12 [2] CRAN (R 4.5.1)
## pcaMethods 2.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PCAN 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pcaPP 2.0-5 2024-08-19 [2] CRAN (R 4.5.1)
## PCAtools 2.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PCHiCdata 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## pd.atdschip.tiling 0.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## pd.genomewidesnp.5 3.14.1 2025-09-10 [2] Bioconductor
## pd.genomewidesnp.6 3.14.1 2025-09-10 [2] Bioconductor
## pd.hg.u95a 3.12.0 2025-09-10 [2] Bioconductor
## pd.hg.u95av2 3.12.0 2025-09-10 [2] Bioconductor
## pd.hg18.60mer.expr 3.12.0 2025-09-10 [2] Bioconductor
## pd.huex.1.0.st.v2 3.14.1 2025-09-10 [2] Bioconductor
## pd.hugene.1.0.st.v1 3.14.1 2025-09-10 [2] Bioconductor
## pd.mapping250k.nsp 3.12.0 2025-09-10 [2] Bioconductor
## pd.mapping250k.sty 3.12.0 2025-09-10 [2] Bioconductor
## pd.mapping50k.hind240 3.12.0 2025-09-10 [2] Bioconductor
## pd.mapping50k.xba240 3.12.0 2025-09-10 [2] Bioconductor
## PDATK 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pdfCluster 1.0-4 2022-12-02 [2] CRAN (R 4.5.1)
## pdftools 3.6.0 2025-09-10 [2] CRAN (R 4.5.1)
## pdInfoBuilder 1.74.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pdist 1.2.1 2022-05-02 [2] CRAN (R 4.5.1)
## PeacoQC 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## peakCombiner 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## peakPantheR 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pec 2025.06.24 2025-07-24 [2] CRAN (R 4.5.1)
## PECA 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## peco 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Pedixplorer 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## penalized 0.9-53 2025-10-02 [2] CRAN (R 4.5.1)
## pengls 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pepDat 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## PepSetTest 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PepsNMR 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PepsNMRData 1.28.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## pepStat 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Peptides 2.4.6 2023-12-13 [2] CRAN (R 4.5.1)
## pepXMLTab 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PerfMeas 1.2.5 2022-09-14 [2] CRAN (R 4.5.1)
## performance 0.15.2 2025-10-06 [2] CRAN (R 4.5.1)
## PerformanceAnalytics 2.0.8 2024-12-09 [2] CRAN (R 4.5.1)
## periodicDNA 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PERMANOVA 0.2.0 2021-09-06 [2] CRAN (R 4.5.1)
## permute 0.9-8 2025-06-25 [2] CRAN (R 4.5.1)
## perturbR 0.1.3 2019-02-19 [2] CRAN (R 4.5.1)
## PFAM.db 3.22.0 2025-10-08 [2] Bioconductor
## pfamAnalyzeR 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pgca 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pgxRpi 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## phangorn 2.12.1 2024-09-17 [2] CRAN (R 4.5.1)
## phantasus 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## phantasusLite 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PharmacoGx 3.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## phastCons100way.UCSC.hg19 3.7.2 2025-09-10 [2] Bioconductor
## phastCons100way.UCSC.hg38 3.7.1 2025-09-10 [2] Bioconductor
## phastCons30way.UCSC.hg38 3.13.1 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## pheatmap 1.0.13 2025-06-05 [2] CRAN (R 4.5.1)
## PhenoGeneRanker 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## phenomis 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## phenopath 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## phenoTest 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## philentropy 0.9.0 2024-11-12 [2] CRAN (R 4.5.1)
## philr 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PhIPData 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## phosphonormalizer 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## phosphoricons 0.2.1 2024-04-08 [2] CRAN (R 4.5.1)
## PhosR 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## phyclust 0.1-34 2023-09-06 [2] CRAN (R 4.5.1)
## phylobase 0.8.12 2024-01-30 [2] CRAN (R 4.5.1)
## phylogram 2.1.0 2018-06-25 [2] CRAN (R 4.5.1)
## phylolm 2.6.5 2024-09-30 [2] CRAN (R 4.5.1)
## PhyloProfile 2.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PhyloProfileData 1.24.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## phyloseq 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## phytools 2.5-2 2025-09-19 [2] CRAN (R 4.5.1)
## piano 2.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PICB 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pickgene 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Pigengene 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## piggyback 0.1.5 2023-07-10 [2] CRAN (R 4.5.1)
## pillar 1.11.1 2025-09-17 [2] CRAN (R 4.5.1)
## pinfsc50 1.3.0 2023-12-05 [2] CRAN (R 4.5.1)
## pingr 2.0.5 2024-12-12 [2] CRAN (R 4.5.1)
## pipeComp 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pipeFrame 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PIPETS 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Pirat 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## piton 1.0.0 2020-11-15 [2] CRAN (R 4.5.1)
## PIUMA 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pixmap 0.4-14 2025-07-26 [2] CRAN (R 4.5.1)
## PK 1.3-6 2023-09-12 [2] CRAN (R 4.5.1)
## pkgbuild 1.4.8 2025-05-26 [2] CRAN (R 4.5.1)
## pkgcond 0.1.1 2021-04-28 [2] CRAN (R 4.5.1)
## pkgconfig 2.0.3 2019-09-22 [2] CRAN (R 4.5.1)
## pkgdown 2.1.3 2025-05-25 [2] CRAN (R 4.5.1)
## pkgload 1.4.1 2025-09-23 [2] CRAN (R 4.5.1)
## pkgndep 1.99.3 2023-10-13 [2] CRAN (R 4.5.1)
## planet 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## planttfhunter 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## plasmodiumanophelescdf 2.18.0 2025-09-10 [2] Bioconductor
## plasmut 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## plgem 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## plier 1.80.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## plogr 0.2.0 2018-03-25 [2] CRAN (R 4.5.1)
## plot3D 1.4.2 2025-07-25 [2] CRAN (R 4.5.1)
## plot3Drgl 1.0.5 2025-07-25 [2] CRAN (R 4.5.1)
## plotfunctions 1.4 2020-04-28 [2] CRAN (R 4.5.1)
## plotgardener 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## plotgardenerData 1.16.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## plotGrouper 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## plotly 4.11.0 2025-06-19 [2] CRAN (R 4.5.1)
## plotmo 3.6.4 2024-08-31 [2] CRAN (R 4.5.1)
## plotrix 3.8-4 2023-11-10 [2] CRAN (R 4.5.1)
## plotROC 2.3.3 2025-08-25 [2] CRAN (R 4.5.1)
## PlotTools 0.3.1 2024-09-03 [2] CRAN (R 4.5.1)
## PLPE 1.70.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pls 2.8-5 2024-09-15 [2] CRAN (R 4.5.1)
## PLSDAbatch 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## plsgenomics 1.5-3 2024-03-28 [2] CRAN (R 4.5.1)
## plsVarSel 0.9.13 2025-04-09 [2] CRAN (R 4.5.1)
## plyinteractions 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## plyr 1.8.9 2023-10-02 [2] CRAN (R 4.5.1)
## plyranges 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## plyxp 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PMA 1.2-4 2024-09-03 [2] CRAN (R 4.5.1)
## PMCMRplus 1.9.12 2024-09-08 [2] CRAN (R 4.5.1)
## pmm 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pmp 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PMScanR 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## png 0.1-8 2022-11-29 [2] CRAN (R 4.5.1)
## PoDCall 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## podkat 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## poem 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pogos 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## poibin 1.6 2024-08-23 [2] CRAN (R 4.5.1)
## PoiClaClu 1.0.2.1 2019-01-04 [2] CRAN (R 4.5.1)
## polspline 1.1.25 2024-05-10 [2] CRAN (R 4.5.1)
## Polychrome 1.5.4 2025-04-06 [2] CRAN (R 4.5.1)
## polyclip 1.10-7 2024-07-23 [2] CRAN (R 4.5.1)
## polycor 0.8-1 2022-01-11 [2] CRAN (R 4.5.1)
## polyCub 0.9.2 2025-02-11 [2] CRAN (R 4.5.1)
## polylabelr 0.3.0 2024-11-19 [2] CRAN (R 4.5.1)
## polynom 1.4-1 2022-04-11 [2] CRAN (R 4.5.1)
## PolynomF 2.0-8 2024-03-03 [2] CRAN (R 4.5.1)
## PolyPhen.Hsapiens.dbSNP131 1.0.2 2025-09-10 [2] Bioconductor
## PolySTest 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Polytect 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## POMA 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pool 1.0.4 2024-10-07 [2] CRAN (R 4.5.1)
## poolr 1.2-0 2025-05-07 [2] CRAN (R 4.5.1)
## poorman 0.2.7 2023-10-30 [2] CRAN (R 4.5.1)
## posterior 1.6.1 2025-02-27 [2] CRAN (R 4.5.1)
## poweRlaw 1.0.0 2025-02-03 [2] CRAN (R 4.5.1)
## powerTCR 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## POWSC 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ppclust 1.1.0.1 2023-12-13 [2] CRAN (R 4.5.1)
## ppcor 1.1 2015-12-03 [2] CRAN (R 4.5.1)
## ppcseq 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PPInfer 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pqsfinder 2.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## prabclus 2.3-4 2024-09-24 [2] CRAN (R 4.5.1)
## pracma 2.4.6 2025-10-22 [2] CRAN (R 4.5.1)
## praise 1.0.0 2015-08-11 [2] CRAN (R 4.5.1)
## pram 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## praznik 11.0.0 2022-05-20 [2] CRAN (R 4.5.1)
## prebs 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## prebsdata 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## preciseTAD 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## preciseTADhub 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## precrec 0.14.5 2025-05-15 [2] CRAN (R 4.5.1)
## PREDA 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PREDAsampledata 0.50.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## preprocessCore 1.72.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## preseqR 4.0.0 2018-06-27 [2] CRAN (R 4.5.1)
## prettydoc 0.4.1 2021-01-10 [2] CRAN (R 4.5.1)
## prettyGraphs 2.2.0 2025-04-12 [2] CRAN (R 4.5.1)
## prettyunits 1.2.0 2023-09-24 [2] CRAN (R 4.5.1)
## primirTSS 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PRIMME 3.2-6 2024-01-09 [2] CRAN (R 4.5.1)
## PrInCE 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## princurve 2.1.6 2021-01-18 [2] CRAN (R 4.5.1)
## printr 0.3 2023-03-08 [2] CRAN (R 4.5.1)
## prismatic 1.1.2 2024-04-10 [2] CRAN (R 4.5.1)
## proActiv 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## proBAMr 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pROC 1.19.0.1 2025-07-31 [2] CRAN (R 4.5.1)
## PROcess 1.86.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## processx 3.8.6 2025-02-21 [2] CRAN (R 4.5.1)
## procoil 2.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## proDA 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ProData 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## prodlim 2025.04.28 2025-04-28 [2] CRAN (R 4.5.1)
## profileModel 0.6.1 2021-01-08 [2] CRAN (R 4.5.1)
## profileplyr 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## profileScoreDist 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## profmem 0.7.0 2025-05-02 [2] CRAN (R 4.5.1)
## profvis 0.4.0 2024-09-20 [2] CRAN (R 4.5.1)
## progeny 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## progress 1.2.3 2023-12-06 [2] CRAN (R 4.5.1)
## progressr 0.17.0 2025-10-15 [2] CRAN (R 4.5.1)
## projectR 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pRoloc 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pRolocdata 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## pRolocGUI 2.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PROMISE 1.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## promises 1.5.0 2025-11-01 [2] CRAN (R 4.5.1)
## PRONE 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## propagate 1.0-7 2025-05-27 [2] CRAN (R 4.5.1)
## PROPER 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PROPS 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Prostar 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## prostateCancerCamcap 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## prostateCancerGrasso 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## prostateCancerStockholm 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## prostateCancerTaylor 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## prostateCancerVarambally 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ProteinGymR 1.4.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## proteinProfiles 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ProteoDisco 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ProteoMM 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## protGear 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ProtGenerics 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## proto 1.0.0 2016-10-29 [2] CRAN (R 4.5.1)
## protolite 2.3.1 2024-10-04 [2] CRAN (R 4.5.1)
## protr 1.7-5 2025-08-21 [2] CRAN (R 4.5.1)
## protViz 0.7.9 2023-12-12 [2] CRAN (R 4.5.1)
## proxy 0.4-27 2022-06-09 [2] CRAN (R 4.5.1)
## proxyC 0.5.2 2025-04-25 [2] CRAN (R 4.5.1)
## PRROC 1.4 2025-03-18 [2] CRAN (R 4.5.1)
## pryr 0.1.6 2023-01-17 [2] CRAN (R 4.5.1)
## ps 1.9.1 2025-04-12 [2] CRAN (R 4.5.1)
## PSCBS 0.68.0 2025-04-18 [2] CRAN (R 4.5.1)
## pscl 1.5.9 2024-01-31 [2] CRAN (R 4.5.1)
## psichomics 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PSMatch 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pspline 1.0-21 2024-12-11 [2] CRAN (R 4.5.1)
## psych 2.5.6 2025-06-23 [2] CRAN (R 4.5.1)
## ptairData 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ptairMS 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PtH2O2lipids 1.36.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ptw 1.9-16 2022-01-19 [2] CRAN (R 4.5.1)
## Publish 2025.07.24 2025-07-24 [2] CRAN (R 4.5.1)
## puma 3.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pumadata 2.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## PureCN 2.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## purrr 1.1.0 2025-07-10 [2] CRAN (R 4.5.1)
## pushbar 0.1.0 2019-03-15 [2] CRAN (R 4.5.1)
## pvac 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pvca 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pvclust 2.2-0 2019-11-19 [2] CRAN (R 4.5.1)
## Pviz 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## pwalign 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PWMEnrich 4.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## PWMEnrich.Dmelanogaster.background 4.44.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## PWMEnrich.Hsapiens.background 4.44.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## PWMEnrich.Mmusculus.background 4.44.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## pwr 1.3-0 2020-03-17 [2] CRAN (R 4.5.1)
## qap 0.1-2 2022-06-27 [2] CRAN (R 4.5.1)
## qcmetrics 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## qdapRegex 0.7.10 2025-03-24 [2] CRAN (R 4.5.1)
## qdapTools 1.3.7 2023-05-10 [2] CRAN (R 4.5.1)
## QDNAseq 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## QDNAseq.hg19 1.40.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## QDNAseq.mm10 1.40.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## QFeatures 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## qgraph 1.9.8 2023-11-03 [2] CRAN (R 4.5.1)
## qmtools 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## qpcR 1.4-2 2025-06-10 [2] CRAN (R 4.5.1)
## qpcrNorm 1.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## qpdf 1.4.1 2025-07-02 [2] CRAN (R 4.5.1)
## qpgraph 2.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## qPLEXanalyzer 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## qPLEXdata 1.28.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## qqconf 1.3.2 2023-04-14 [2] CRAN (R 4.5.1)
## qqman 0.1.9 2023-08-23 [2] CRAN (R 4.5.1)
## QRscore 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## qs 0.27.3 2025-03-11 [2] CRAN (R 4.5.1)
## qs2 0.1.5 2025-03-07 [2] CRAN (R 4.5.1)
## qsea 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## qsmooth 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## QSutils 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## qsvaR 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## qtl 1.70 2024-08-22 [2] CRAN (R 4.5.1)
## QTLExperiment 2.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Qtlizer 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## quadprog 1.5-8 2019-11-20 [2] CRAN (R 4.5.1)
## qualV 0.3-5 2023-07-02 [2] CRAN (R 4.5.1)
## quanteda 4.3.1 2025-07-10 [2] CRAN (R 4.5.1)
## quantiseqr 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## quantmod 0.4.28 2025-06-19 [2] CRAN (R 4.5.1)
## quantreg 6.1 2025-03-10 [2] CRAN (R 4.5.1)
## quantro 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## quantsmooth 1.76.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## quarto 1.5.1 2025-09-04 [2] CRAN (R 4.5.1)
## QuasR 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## QuaternaryProd 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## QUBIC 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## QUBICdata 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## queryup 1.0.5 2023-06-05 [2] CRAN (R 4.5.1)
## questionr 0.8.1 2025-06-10 [2] CRAN (R 4.5.1)
## QuickJSR 1.8.1 2025-09-20 [2] CRAN (R 4.5.1)
## quitefastmst 0.9.0 2025-07-23 [2] CRAN (R 4.5.1)
## qusage 2.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## qvalue 2.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## qvcalc 1.0.4 2025-01-24 [2] CRAN (R 4.5.1)
## R.cache 0.17.0 2025-05-02 [2] CRAN (R 4.5.1)
## R.devices 2.17.2 2024-01-29 [2] CRAN (R 4.5.1)
## R.filesets 2.15.1 2024-01-24 [2] CRAN (R 4.5.1)
## R.huge 0.10.1 2024-01-24 [2] CRAN (R 4.5.1)
## R.matlab 3.7.0 2022-08-25 [2] CRAN (R 4.5.1)
## R.methodsS3 1.8.2 2022-06-13 [2] CRAN (R 4.5.1)
## R.oo 1.27.1 2025-05-02 [2] CRAN (R 4.5.1)
## R.rsp 0.46.0 2024-02-17 [2] CRAN (R 4.5.1)
## R.utils 2.13.0 2025-02-24 [2] CRAN (R 4.5.1)
## r2glmm 0.1.3 2025-04-28 [2] CRAN (R 4.5.1)
## R2HTML 2.3.4 2024-06-16 [2] CRAN (R 4.5.1)
## R2jags 0.8-9 2024-10-13 [2] CRAN (R 4.5.1)
## r2r 0.1.2 2024-11-09 [2] CRAN (R 4.5.1)
## R2WinBUGS 2.1-23 2025-07-23 [2] CRAN (R 4.5.1)
## R3CPET 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## r3Cseq 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## r3dmol 0.1.2 2021-03-14 [2] CRAN (R 4.5.1)
## R453Plus1Toolbox 1.60.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## R4RNA 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## R6 2.6.1 2025-02-15 [2] CRAN (R 4.5.1)
## R6P 0.4.0 2024-12-22 [2] CRAN (R 4.5.1)
## radiant.data 1.6.8 2025-09-16 [2] CRAN (R 4.5.1)
## RadioGx 2.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rae230a.db 3.13.0 2025-09-10 [2] Bioconductor
## rae230aprobe 2.18.0 2025-09-10 [2] Bioconductor
## raer 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## raerdata 1.8.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## rafalib 1.0.4 2025-04-08 [2] CRAN (R 4.5.1)
## ragg 1.5.0 2025-09-02 [2] CRAN (R 4.5.1)
## RaggedExperiment 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RAIDS 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rain 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rainbow 3.8 2024-01-23 [2] CRAN (R 4.5.1)
## ramr 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RaMS 1.4.3 2024-10-09 [2] CRAN (R 4.5.1)
## ramwas 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## randomcoloR 1.1.0.1 2019-11-24 [2] CRAN (R 4.5.1)
## randomForest 4.7-1.2 2024-09-22 [2] CRAN (R 4.5.1)
## randomForestSRC 3.4.3 2025-10-10 [2] CRAN (R 4.5.1)
## randomizr 1.0.0 2023-08-10 [2] CRAN (R 4.5.1)
## randPack 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## randRotation 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## randtests 1.0.2 2024-04-23 [2] CRAN (R 4.5.1)
## randtoolbox 2.0.5 2024-10-18 [2] CRAN (R 4.5.1)
## ranger 0.17.0 2024-11-08 [2] CRAN (R 4.5.1)
## RankAggreg 0.6.6 2020-05-09 [2] CRAN (R 4.5.1)
## RankProd 3.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RANN 2.6.2 2024-08-25 [2] CRAN (R 4.5.1)
## rapiclient 0.1.8 2024-09-30 [2] CRAN (R 4.5.1)
## rapidjsonr 1.2.0 2020-03-08 [2] CRAN (R 4.5.1)
## RApiSerialize 0.1.4 2024-09-28 [2] CRAN (R 4.5.1)
## rappdirs 0.3.3 2021-01-31 [2] CRAN (R 4.5.1)
## rapportools 1.2 2025-02-28 [2] CRAN (R 4.5.1)
## RAREsim 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RareVariantVis 2.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rARPACK 0.11-0 2016-03-10 [2] CRAN (R 4.5.1)
## Rarr 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## raster 3.6-32 2025-03-28 [2] CRAN (R 4.5.1)
## rat2302frmavecs 0.99.11 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## Rattus.norvegicus 1.3.1 2025-09-10 [2] Bioconductor
## rawDiag 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rawrr 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RbcBook1 1.78.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Rbec 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rbenchmark 1.0.0 2012-08-30 [2] CRAN (R 4.5.1)
## rBeta2009 1.0.1 2024-11-04 [2] CRAN (R 4.5.1)
## RBGL 1.86.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rbibutils 2.3 2024-10-04 [2] CRAN (R 4.5.1)
## rbioapi 0.8.3 2025-07-03 [2] CRAN (R 4.5.1)
## RBioFormats 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rbiom 2.2.1 2025-06-27 [2] CRAN (R 4.5.1)
## rBiopaxParser 2.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rBLAST 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RBM 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Rbowtie 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Rbowtie2 2.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rbsurv 2.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Rbwa 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Rcapture 1.4-4 2022-05-04 [2] CRAN (R 4.5.1)
## RCAS 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RCASPAR 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rcdd 1.6 2023-12-15 [2] CRAN (R 4.5.1)
## rcdk 3.8.1 2023-07-01 [2] CRAN (R 4.5.1)
## rcdklibs 2.9 2024-03-03 [2] CRAN (R 4.5.1)
## rcellminer 2.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rcellminerData 2.32.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## rCGH 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RCircos 1.2.2 2021-12-19 [2] CRAN (R 4.5.1)
## RcisTarget 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RcisTarget.hg19.motifDBs.cisbpOnly.500bp 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## rclipboard 0.2.1 2023-11-15 [2] CRAN (R 4.5.1)
## RCM 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rcmdcheck 1.4.0 2021-09-27 [2] CRAN (R 4.5.1)
## Rcollectl 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RColorBrewer 1.1-3 2022-04-03 [2] CRAN (R 4.5.1)
## rcompanion 2.5.0 2025-02-13 [2] CRAN (R 4.5.1)
## Rcpi 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Rcpp 1.1.0 2025-07-02 [2] CRAN (R 4.5.1)
## RcppAlgos 2.9.3 2025-02-03 [2] CRAN (R 4.5.1)
## RcppAnnoy 0.0.22 2024-01-23 [2] CRAN (R 4.5.1)
## RcppArmadillo 15.0.2-2 2025-09-19 [2] CRAN (R 4.5.1)
## RcppCCTZ 0.2.13 2024-12-12 [2] CRAN (R 4.5.1)
## RcppDate 0.0.6 2025-05-29 [2] CRAN (R 4.5.1)
## RcppDE 0.1.8 2025-02-19 [2] CRAN (R 4.5.1)
## RcppDist 0.1.1.1 2025-06-12 [2] CRAN (R 4.5.1)
## RcppEigen 0.3.4.0.2 2024-08-24 [2] CRAN (R 4.5.1)
## RcppGSL 0.3.13 2023-01-13 [2] CRAN (R 4.5.1)
## RcppHMM 1.2.2.1 2025-09-17 [2] CRAN (R 4.5.1)
## RcppHNSW 0.6.0 2024-02-04 [2] CRAN (R 4.5.1)
## RcppHungarian 0.3 2023-09-05 [2] CRAN (R 4.5.1)
## RcppInt64 0.0.5 2024-04-30 [2] CRAN (R 4.5.1)
## RcppML 0.3.7 2021-09-21 [2] CRAN (R 4.5.1)
## RcppNumerical 0.6-0 2023-09-06 [2] CRAN (R 4.5.1)
## RcppParallel 5.1.11-1 2025-08-27 [2] CRAN (R 4.5.1)
## RcppProgress 0.4.2 2020-02-06 [2] CRAN (R 4.5.1)
## RcppRoll 0.3.1 2024-07-07 [2] CRAN (R 4.5.1)
## RcppSpdlog 0.0.23 2025-10-12 [2] CRAN (R 4.5.1)
## RcppThread 2.2.0 2025-01-07 [2] CRAN (R 4.5.1)
## RcppTOML 0.2.3 2025-03-08 [2] CRAN (R 4.5.1)
## RCSL 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RCurl 1.98-1.17 2025-03-22 [2] CRAN (R 4.5.1)
## Rcwl 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RcwlPipelines 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RCX 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RCy3 2.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RCyjs 2.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Rdisop 1.70.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rdist 0.0.5 2020-05-04 [2] CRAN (R 4.5.1)
## Rdpack 2.6.4 2025-04-09 [2] CRAN (R 4.5.1)
## RDRToolbox 1.60.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## reactable 0.4.4 2023-03-12 [2] CRAN (R 4.5.1)
## reactome.db 1.94.0 2025-10-08 [2] Bioconductor
## ReactomeGSA 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ReactomeGSA.data 1.24.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## ReactomePA 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## reactR 0.6.1 2024-09-14 [2] CRAN (R 4.5.1)
## readbitmap 0.1.5 2018-06-27 [2] CRAN (R 4.5.1)
## readBrukerFlexData 1.9.3 2024-10-02 [2] CRAN (R 4.5.1)
## reader 1.0.6 2017-01-03 [2] CRAN (R 4.5.1)
## readJDX 0.6.4 2023-11-18 [2] CRAN (R 4.5.1)
## readMzXmlData 2.8.4 2025-10-17 [2] CRAN (R 4.5.1)
## readODS 2.3.2 2025-01-13 [2] CRAN (R 4.5.1)
## ReadqPCR 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## readr 2.1.5 2024-01-10 [2] CRAN (R 4.5.1)
## readxl 1.4.5 2025-03-07 [2] CRAN (R 4.5.1)
## rearrr 0.3.5 2025-03-03 [2] CRAN (R 4.5.1)
## REBET 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rebook 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rebus 0.1-3 2017-04-25 [2] CRAN (R 4.5.1)
## rebus.base 0.0-3 2017-04-25 [2] CRAN (R 4.5.1)
## rebus.datetimes 0.0-2 2022-11-03 [2] CRAN (R 4.5.1)
## rebus.numbers 0.0-1.1 2025-07-10 [2] CRAN (R 4.5.1)
## rebus.unicode 0.0-2.1 2025-09-23 [2] CRAN (R 4.5.1)
## receptLoss 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## recipes 1.3.1 2025-05-21 [2] CRAN (R 4.5.1)
## recommenderlab 1.0.7 2025-05-31 [2] CRAN (R 4.5.1)
## reconsi 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RecordLinkage 0.4-12.5 2025-07-28 [2] CRAN (R 4.5.1)
## recosystem 0.5.1 2023-05-05 [2] CRAN (R 4.5.1)
## recount 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## recount3 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## recountmethylation 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## recountWorkflow 1.33.0 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## recoup 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RedeR 3.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RedisParam 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## REDseq 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ReducedExperiment 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## redux 1.1.5 2025-09-01 [2] CRAN (R 4.5.1)
## RefManageR 1.4.0 2022-09-30 [2] CRAN (R 4.5.1)
## reformulas 0.4.2 2025-10-28 [2] CRAN (R 4.5.1)
## refund 0.1-37 2024-09-20 [2] CRAN (R 4.5.1)
## RegEnrich 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## regionalpcs 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RegionalST 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## regioneR 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## regioneReloaded 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## regionReport 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## registry 0.5-1 2019-03-05 [2] CRAN (R 4.5.1)
## RegParallel 1.28.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## regsplice 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## regutools 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## relations 0.6-15 2025-02-19 [2] CRAN (R 4.5.1)
## reldist 1.7-2 2023-02-17 [2] CRAN (R 4.5.1)
## relimp 1.0-5 2016-03-30 [2] CRAN (R 4.5.1)
## remaCor 0.0.20 2025-08-20 [2] CRAN (R 4.5.1)
## rematch 2.0.0 2023-08-30 [2] CRAN (R 4.5.1)
## rematch2 2.1.2 2020-05-01 [2] CRAN (R 4.5.1)
## remotes 2.5.0 2024-03-17 [2] CRAN (R 4.5.1)
## REMP 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rentrez 1.2.4 2025-06-11 [2] CRAN (R 4.5.1)
## renv 1.1.5 2025-07-24 [2] CRAN (R 4.5.1)
## repmis 0.5.1 2025-07-02 [2] CRAN (R 4.5.1)
## repo 2.1.5 2020-02-08 [2] CRAN (R 4.5.1)
## ReportingTools 2.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## reportr 1.3.1 2025-03-29 [2] CRAN (R 4.5.1)
## reportROC 3.6 2022-06-17 [2] CRAN (R 4.5.1)
## repr 1.1.7 2024-03-22 [2] CRAN (R 4.5.1)
## reprex 2.1.1 2024-07-06 [2] CRAN (R 4.5.1)
## RepViz 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## reshape 0.8.10 2025-06-19 [2] CRAN (R 4.5.1)
## reshape2 1.4.4 2020-04-09 [2] CRAN (R 4.5.1)
## ResidualMatrix 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RESOLVE 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## restfulr 0.0.16 2025-06-27 [2] CRAN (R 4.5.1)
## reticulate 1.44.0 2025-10-25 [2] CRAN (R 4.5.1)
## retrofit 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ReUseData 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rex 1.2.1 2021-11-26 [2] CRAN (R 4.5.1)
## rexposome 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rfaRm 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Rfast 2.1.5.2 2025-10-10 [2] CRAN (R 4.5.1)
## RFLOMICS 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RforProteomics 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## rfPred 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rGenomeTracks 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rGenomeTracksData 0.99.0 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## rgenoud 5.9-0.11 2024-09-04 [2] CRAN (R 4.5.1)
## rgl 1.3.24 2025-06-25 [2] CRAN (R 4.5.1)
## RGMQLlib 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## RgnTX 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rgoslin 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RGraph2js 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Rgraphviz 2.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rGREAT 2.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RGSEA 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rgsepd 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rhandsontable 0.3.8 2021-05-27 [2] CRAN (R 4.5.1)
## rhdf5 2.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rhdf5client 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rhdf5filters 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Rhdf5lib 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rheumaticConditionWOLLBOLD 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## rhinotypeR 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Rhisat2 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RhpcBLASctl 0.23-42 2023-02-11 [2] CRAN (R 4.5.1)
## Rhtslib 3.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RiboCrypt 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RiboDiPA 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RiboProfiling 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ribor 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## riboSeqR 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ribosomeProfilingQC 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ridge 3.3 2022-04-11 [2] CRAN (R 4.5.1)
## rifi 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rifiComparative 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Rigraphlib 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rigvf 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RImageJROI 0.1.3 2024-08-17 [2] CRAN (R 4.5.1)
## RImmPort 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rintrojs 0.3.4 2024-01-11 [2] CRAN (R 4.5.1)
## rio 1.2.4 2025-09-26 [2] CRAN (R 4.5.1)
## riskRegression 2025.09.17 2025-09-17 [2] CRAN (R 4.5.1)
## RISmed 2.3.0 2021-07-05 [2] CRAN (R 4.5.1)
## RITAN 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RITANdata 1.34.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## RIVER 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rjags 4-17 2025-03-24 [2] CRAN (R 4.5.1)
## rJava 1.0-11 2024-01-26 [2] CRAN (R 4.5.1)
## RJMCMCNucleosomes 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rjson 0.2.23 2024-09-16 [2] CRAN (R 4.5.1)
## rjsoncons 1.3.2 2025-03-15 [2] CRAN (R 4.5.1)
## RJSONIO 2.0.0 2025-04-05 [2] CRAN (R 4.5.1)
## Rlab 4.0 2022-05-04 [2] CRAN (R 4.5.1)
## rlang 1.1.6 2025-04-11 [2] CRAN (R 4.5.1)
## RLassoCox 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rlecuyer 0.3-8 2023-12-02 [2] CRAN (R 4.5.1)
## rlist 0.4.6.2 2021-09-03 [2] CRAN (R 4.5.1)
## RLMM 1.72.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RLRsim 3.1-8 2022-03-16 [2] CRAN (R 4.5.1)
## Rmagpie 1.66.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RMariaDB 1.3.4 2025-02-24 [2] CRAN (R 4.5.1)
## rmarkdown 2.30 2025-09-28 [2] CRAN (R 4.5.1)
## RMassBank 3.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RMassBankData 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## rmcorr 0.7.0 2024-07-26 [2] CRAN (R 4.5.1)
## rmdformats 1.0.4 2022-05-17 [2] CRAN (R 4.5.1)
## rmelting 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rmeta 3.0 2018-03-20 [2] CRAN (R 4.5.1)
## rmio 0.4.0 2022-02-17 [2] CRAN (R 4.5.1)
## Rmisc 1.5.1 2022-05-02 [2] CRAN (R 4.5.1)
## Rmixmod 2.1.10 2023-12-13 [2] CRAN (R 4.5.1)
## Rmmquant 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Rmpfr 1.1-2 2025-10-27 [2] CRAN (R 4.5.1)
## Rmpi 0.7-3.3 2025-01-13 [2] CRAN (R 4.5.1)
## rms 8.1-0 2025-10-14 [2] CRAN (R 4.5.1)
## rmspc 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RMTstat 0.3.1 2022-04-12 [2] CRAN (R 4.5.1)
## rmutil 1.1.10 2022-10-27 [2] CRAN (R 4.5.1)
## RMySQL 0.11.1 2025-04-01 [2] CRAN (R 4.5.1)
## rmzqc 0.7.0 2025-07-16 [2] CRAN (R 4.5.1)
## RNAAgeCalc 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RNAdecay 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rnaEditr 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RNAmodR 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RNAmodR.AlkAnilineSeq 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RNAmodR.Data 1.24.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## RNAmodR.ML 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RNAmodR.RiboMethSeq 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RNAsense 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RNAseq123 1.33.0 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## rnaseqcomp 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RNAseqCovarImpute 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RNAseqData.HNRNPC.bam.chr14 0.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## rnaseqDTU 1.29.0 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## rnaseqGene 1.33.0 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## RnaSeqGeneEdgeRQL 1.33.1 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## RNASeqPower 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RnaSeqSampleSize 2.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RnaSeqSampleSizeData 1.42.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## RnBeads 2.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RnBeads.hg19 1.42.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## RnBeads.hg38 1.42.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## RnBeads.mm10 2.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## RnBeads.mm9 1.42.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## RnBeads.rn5 1.42.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## rncl 0.8.7 2023-01-08 [2] CRAN (R 4.5.1)
## RNeXML 2.4.11 2023-02-01 [2] CRAN (R 4.5.1)
## rngtools 1.5.2 2021-09-20 [2] CRAN (R 4.5.1)
## rngWELL 0.10-10 2024-10-17 [2] CRAN (R 4.5.1)
## RNifti 1.8.0 2025-02-22 [2] CRAN (R 4.5.1)
## Rnits 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RNOmni 1.0.1.2 2023-09-11 [2] CRAN (R 4.5.1)
## roar 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## roastgsa 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## robin 2.0.0 2025-01-22 [2] CRAN (R 4.5.1)
## robslopes 1.1.3 2023-04-27 [2] CRAN (R 4.5.1)
## robust 0.7-5 2024-08-17 [2] CRAN (R 4.5.1)
## robustbase 0.99-6 2025-09-04 [2] CRAN (R 4.5.1)
## RobustRankAggreg 1.2.1 2022-10-03 [2] CRAN (R 4.5.1)
## ROC 1.86.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ROCit 2.1.2 2024-05-16 [2] CRAN (R 4.5.1)
## ROCpAI 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ROCR 1.0-11 2020-05-02 [2] CRAN (R 4.5.1)
## ROI 1.0-1 2023-04-20 [2] CRAN (R 4.5.1)
## ROI.plugin.lpsolve 1.0-2 2023-07-07 [2] CRAN (R 4.5.1)
## RolDE 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## roll 1.2.0 2025-08-22 [2] CRAN (R 4.5.1)
## rols 3.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ROntoTools 2.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Rook 1.2 2022-11-07 [2] CRAN (R 4.5.1)
## rootSolve 1.8.2.4 2023-09-21 [2] CRAN (R 4.5.1)
## ropls 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## roptim 0.1.7 2025-10-03 [2] CRAN (R 4.5.1)
## ROSeq 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ROTS 2.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## roxygen2 7.3.3 2025-09-03 [2] CRAN (R 4.5.1)
## roxyglobals 1.0.0 2023-08-21 [2] CRAN (R 4.5.1)
## roxytest 0.0.2 2023-01-11 [2] CRAN (R 4.5.1)
## RPA 1.66.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rpart 4.1.24 2025-01-07 [3] CRAN (R 4.5.1)
## rpart.plot 3.1.3 2025-07-26 [2] CRAN (R 4.5.1)
## rphylopic 1.5.0 2024-09-04 [2] CRAN (R 4.5.1)
## RPMM 1.25 2017-02-28 [2] CRAN (R 4.5.1)
## RPostgres 1.4.8 2025-02-25 [2] CRAN (R 4.5.1)
## RPostgreSQL 0.7-8 2025-03-28 [2] CRAN (R 4.5.1)
## rprimer 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rprojroot 2.1.1 2025-08-26 [2] CRAN (R 4.5.1)
## RProtoBufLib 2.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rpx 2.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Rqc 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rqt 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rqubic 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rrapply 1.2.7 2024-06-26 [2] CRAN (R 4.5.1)
## rrBLUP 4.6.3 2023-12-10 [2] CRAN (R 4.5.1)
## RRBSdata 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## rrcov 1.7-7 2025-04-21 [2] CRAN (R 4.5.1)
## rRDP 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rRDPData 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## RRHO 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rrvgo 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rsample 1.3.1 2025-07-29 [2] CRAN (R 4.5.1)
## Rsamtools 2.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rsbml 2.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rScudo 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rsemmed 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RSeqAn 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RSKC 2.4.2 2016-08-28 [2] CRAN (R 4.5.1)
## rslurm 0.6.2 2023-02-24 [2] CRAN (R 4.5.1)
## rsm 2.10.6 2025-03-24 [2] CRAN (R 4.5.1)
## RSNNS 0.4-17 2023-11-30 [2] CRAN (R 4.5.1)
## Rsolnp 2.0.1 2025-06-30 [2] CRAN (R 4.5.1)
## rsparse 0.5.3 2025-02-17 [2] CRAN (R 4.5.1)
## RSpectra 0.16-2 2024-07-18 [2] CRAN (R 4.5.1)
## rSpectral 1.0.0.10 2023-01-18 [2] CRAN (R 4.5.1)
## rsq 2.7 2024-09-29 [2] CRAN (R 4.5.1)
## RSQLite 2.4.3 2025-08-20 [2] CRAN (R 4.5.1)
## rstan 2.32.7 2025-03-10 [2] CRAN (R 4.5.1)
## rstantools 2.5.0 2025-09-01 [2] CRAN (R 4.5.1)
## rstatix 0.7.3 2025-10-18 [2] CRAN (R 4.5.1)
## rstudioapi 0.17.1 2024-10-22 [2] CRAN (R 4.5.1)
## Rsubread 2.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rsvd 1.0.5 2021-04-16 [2] CRAN (R 4.5.1)
## rsvg 2.7.0 2025-09-08 [2] CRAN (R 4.5.1)
## RSVSim 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rSWeeP 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RTCA 1.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RTCGA 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RTCGA.clinical 20151101.40.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## RTCGA.CNV 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## RTCGA.methylation 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## RTCGA.miRNASeq 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## RTCGA.mRNA 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## RTCGA.mutations 20151101.40.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## RTCGA.PANCAN12 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## RTCGA.rnaseq 20151101.40.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## RTCGA.RPPA 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## RTCGAToolbox 2.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rTensor 1.4.9 2025-08-25 [2] CRAN (R 4.5.1)
## RTN 2.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RTNduals 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RTNsurvival 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RTopper 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Rtpca 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rtracklayer 1.70.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RTriangle 1.6-0.15 2025-04-14 [2] CRAN (R 4.5.1)
## rTRM 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rTRMui 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Rtsne 0.17 2023-12-07 [2] CRAN (R 4.5.1)
## Rttf2pt1 1.3.14 2025-09-26 [2] CRAN (R 4.5.1)
## RUCova 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## runibic 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RUnit 0.4.33.1 2025-06-17 [2] CRAN (R 4.5.1)
## runonce 0.3.3 2025-10-07 [2] CRAN (R 4.5.1)
## ruv 0.9.7.1 2019-08-30 [2] CRAN (R 4.5.1)
## RUVcorr 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RUVnormalize 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RUVnormalizeData 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## RUVSeq 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rvcheck 0.2.1 2021-10-22 [2] CRAN (R 4.5.1)
## rversions 3.0.0 2025-10-09 [2] CRAN (R 4.5.1)
## rvest 1.0.5 2025-08-29 [2] CRAN (R 4.5.1)
## rvinecopulib 0.7.3.1.0 2025-06-13 [2] CRAN (R 4.5.1)
## Rvisdiff 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RVS 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## RWeka 0.4-46 2023-03-07 [2] CRAN (R 4.5.1)
## RWekajars 3.9.3-2 2019-10-19 [2] CRAN (R 4.5.1)
## rWikiPathways 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## rworkflows 1.0.6 2025-01-23 [2] CRAN (R 4.5.1)
## s2 1.1.9 2025-05-23 [2] CRAN (R 4.5.1)
## S4Arrays 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## S4Vectors 0.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## S7 0.2.0 2024-11-07 [2] CRAN (R 4.5.1)
## sabre 0.4.3 2022-08-17 [2] CRAN (R 4.5.1)
## safe 3.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## safetensors 0.2.0 2025-08-18 [2] CRAN (R 4.5.1)
## sagenhaft 1.80.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SAIGEgds 2.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sampleClassifier 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sampleClassifierData 1.34.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## sampling 2.11 2025-07-10 [2] CRAN (R 4.5.1)
## samr 3.0 2018-10-16 [2] CRAN (R 4.5.1)
## SamSPECTRAL 1.64.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sandwich 3.1-1 2024-09-15 [2] CRAN (R 4.5.1)
## sangeranalyseR 1.19.0 2025-10-13 [2] Bioconductor 3.22 (R 4.5.1)
## sangerseqR 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SanityR 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SANTA 2.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SARC 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sarks 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## saseR 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sass 0.4.10 2025-04-11 [2] CRAN (R 4.5.1)
## satuRn 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SAVER 1.1.2 2019-11-13 [2] CRAN (R 4.5.1)
## SBGNview 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SBGNview.data 1.24.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## SBMLR 2.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SC3 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scaeData 1.6.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## scafari 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Scale4C 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ScaledMatrix 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scales 1.4.0 2025-04-24 [2] CRAN (R 4.5.1)
## scam 1.2-20 2025-10-14 [2] CRAN (R 4.5.1)
## SCAN.UPC 2.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scanMiR 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scanMiRApp 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scanMiRData 1.16.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## scAnnotatR 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scAnnotatR.models 0.99.10 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## SCANVIS 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SCArray 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SCArray.sat 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scATAC.Explorer 1.16.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## scater 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scatterHatch 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scattermore 1.2 2023-06-12 [2] CRAN (R 4.5.1)
## scatterpie 0.2.6 2025-09-12 [2] CRAN (R 4.5.1)
## scatterplot3d 0.3-44 2023-05-05 [2] CRAN (R 4.5.1)
## scBFA 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SCBN 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scBubbletree 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scCB2 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scClassify 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sccomp 2.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sccore 1.0.6 2025-04-13 [2] CRAN (R 4.5.1)
## scCustomize 3.2.0 2025-09-10 [2] CRAN (R 4.5.1)
## scDataviz 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scDblFinder 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scDD 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scDDboost 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scde 2.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scDesign3 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scDiagnostics 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scDotPlot 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scds 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SCFA 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scFeatureFilter 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scFeatures 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scGPS 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scGraphVerse 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sched 1.0.3 2024-10-02 [2] CRAN (R 4.5.1)
## schex 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scHiCcompare 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scHOT 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scico 1.5.0 2023-08-14 [2] CRAN (R 4.5.1)
## scider 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scifer 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scLANE 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SCLCBam 1.42.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## scmap 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scMerge 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scMET 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scmeth 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scMitoMut 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scMultiome 1.10.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## scMultiSim 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SCnorm 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scone 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Sconify 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SCOPE 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scoreInvHap 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scoup 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scp 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scPCA 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scpdata 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## scPipe 2.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SCpubr 3.0.0 2025-08-20 [2] CRAN (R 4.5.1)
## scQTLtools 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scran 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scrapper 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scReClassify 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scRecover 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## screenCounter 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ScreenR 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scRepertoire 2.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scrime 1.3.5 2018-12-01 [2] CRAN (R 4.5.1)
## scRNAseq 2.24.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## scRNAseqApp 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scruff 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scry 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scrypt 0.1.6 2023-01-29 [2] CRAN (R 4.5.1)
## scs 3.2.7 2025-04-14 [2] CRAN (R 4.5.1)
## scShapes 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scTensor 2.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scTGIF 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scTHI 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scTHI.data 1.22.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## sctransform 0.4.2 2025-04-30 [2] CRAN (R 4.5.1)
## scTreeViz 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scuttle 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## scviR 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sda 1.3.9 2025-04-08 [2] CRAN (R 4.5.1)
## SDAMS 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## seahtrue 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sechm 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## seewave 2.2.4 2025-08-19 [2] CRAN (R 4.5.1)
## segclust2d 0.3.3 2024-04-24 [2] CRAN (R 4.5.1)
## segmented 2.1-4 2025-02-28 [2] CRAN (R 4.5.1)
## segmenter 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## segmentSeq 2.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## selectKSigs 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## selectr 0.4-2 2019-11-20 [2] CRAN (R 4.5.1)
## SELEX 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SemDist 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## semisup 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sendmailR 1.4-0 2023-01-12 [2] CRAN (R 4.5.1)
## seq.hotSPOT 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## seq2pathway 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## seq2pathway.data 1.42.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## seqArchR 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## seqArchRplus 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SeqArray 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## seqc 1.44.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## seqCAT 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## seqcombo 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SeqGate 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SeqGSEA 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Seqinfo 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## seqinr 4.2-36 2023-12-08 [2] CRAN (R 4.5.1)
## seqLogo 1.76.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## seqmagick 0.1.7 2024-01-09 [2] CRAN (R 4.5.1)
## seqminer 9.7 2024-10-02 [2] CRAN (R 4.5.1)
## seqpac 1.9.2 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## seqPattern 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## seqsetvis 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SeqSQC 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sequencing 1.33.0 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## SeqVarTools 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SEraster 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## seriation 1.5.8 2025-08-20 [2] CRAN (R 4.5.1)
## serumStimulation 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## servr 0.32 2024-10-04 [2] CRAN (R 4.5.1)
## sesame 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sesameData 1.28.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## sessioninfo 1.2.3 2025-02-05 [2] CRAN (R 4.5.1)
## SETA 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SEtools 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## setRNG 2024.2-1 2024-02-18 [2] CRAN (R 4.5.1)
## sets 1.0-25 2023-12-06 [2] CRAN (R 4.5.1)
## settings 0.2.7 2021-05-07 [2] CRAN (R 4.5.1)
## Seurat 5.3.1 2025-10-29 [2] CRAN (R 4.5.1)
## SeuratObject 5.2.0 2025-08-27 [2] CRAN (R 4.5.1)
## sevenbridges 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sevenC 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## seventyGeneData 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## sf 1.0-21 2025-05-15 [2] CRAN (R 4.5.1)
## sfarrow 0.4.1 2021-10-27 [2] CRAN (R 4.5.1)
## SFEData 1.12.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## sfheaders 0.4.4 2024-01-17 [2] CRAN (R 4.5.1)
## sfsmisc 1.1-22 2025-09-01 [2] CRAN (R 4.5.1)
## sftime 0.3.1 2025-08-19 [2] CRAN (R 4.5.1)
## SGCP 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sgdGMF 1.0.1 2025-05-17 [2] CRAN (R 4.5.1)
## sgeostat 1.0-27 2016-02-03 [2] CRAN (R 4.5.1)
## sgof 2.3.5 2024-07-17 [2] CRAN (R 4.5.1)
## SGSeq 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## shades 1.4.0 2019-08-02 [2] CRAN (R 4.5.1)
## shadowtext 0.1.6 2025-08-24 [2] CRAN (R 4.5.1)
## shape 1.4.6.1 2024-02-23 [2] CRAN (R 4.5.1)
## shapefiles 0.7.2 2022-08-25 [2] CRAN (R 4.5.1)
## shapr 1.0.5 2025-08-25 [2] CRAN (R 4.5.1)
## SharedObject 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## shiny 1.11.1 2025-07-03 [2] CRAN (R 4.5.1)
## shiny.gosling 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## shiny.react 0.4.0 2024-05-20 [2] CRAN (R 4.5.1)
## shinyAce 0.4.4 2025-02-03 [2] CRAN (R 4.5.1)
## shinyalert 3.1.0 2024-04-27 [2] CRAN (R 4.5.1)
## shinybiocloader 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## shinyBS 0.61.1 2022-04-17 [2] CRAN (R 4.5.1)
## shinybusy 0.3.3 2024-03-09 [2] CRAN (R 4.5.1)
## shinycssloaders 1.1.0 2024-07-30 [2] CRAN (R 4.5.1)
## shinycustomloader 0.9.0 2018-03-27 [2] CRAN (R 4.5.1)
## shinyCyJS 1.0.0 2023-09-26 [2] CRAN (R 4.5.1)
## shinydashboard 0.7.3 2025-04-21 [2] CRAN (R 4.5.1)
## shinydashboardPlus 2.0.6 2025-08-25 [2] CRAN (R 4.5.1)
## shinyDSP 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## shinyepico 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## shinyFeedback 0.4.0 2021-09-23 [2] CRAN (R 4.5.1)
## shinyFiles 0.9.3 2022-08-19 [2] CRAN (R 4.5.1)
## shinyHeatmaply 0.2.0 2020-04-06 [2] CRAN (R 4.5.1)
## shinyhelper 0.3.2 2019-11-09 [2] CRAN (R 4.5.1)
## shinyjqui 0.4.1 2022-02-03 [2] CRAN (R 4.5.1)
## shinyjs 2.1.0 2021-12-23 [2] CRAN (R 4.5.1)
## shinylogs 0.2.1 2022-04-18 [2] CRAN (R 4.5.1)
## shinymanager 1.0.410 2022-09-27 [2] CRAN (R 4.5.1)
## shinyMatrix 0.8.0 2024-04-10 [2] CRAN (R 4.5.1)
## shinymeta 0.2.1 2025-04-11 [2] CRAN (R 4.5.1)
## shinyMethyl 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## shinyMethylData 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## shinyscreenshot 0.2.1 2023-08-21 [2] CRAN (R 4.5.1)
## shinytest 1.6.1 2024-05-30 [2] CRAN (R 4.5.1)
## shinytest2 0.4.1 2025-04-11 [2] CRAN (R 4.5.1)
## shinythemes 1.2.0 2021-01-25 [2] CRAN (R 4.5.1)
## shinytitle 0.1.0 2021-06-16 [2] CRAN (R 4.5.1)
## shinytoastr 2.2.0 2023-08-30 [2] CRAN (R 4.5.1)
## shinyTree 0.3.1 2023-08-07 [2] CRAN (R 4.5.1)
## shinyvalidate 0.1.3 2023-10-04 [2] CRAN (R 4.5.1)
## shinyWidgets 0.9.0 2025-02-21 [2] CRAN (R 4.5.1)
## ShortRead 1.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## showimage 1.0.0 2018-01-24 [2] CRAN (R 4.5.1)
## showtext 0.9-7 2024-03-02 [2] CRAN (R 4.5.1)
## showtextdb 3.0 2020-06-04 [2] CRAN (R 4.5.1)
## SIAMCAT 2.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SICtools 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SIFT.Hsapiens.dbSNP132 1.0.2 2025-09-10 [2] Bioconductor
## SIFT.Hsapiens.dbSNP137 1.0.0 2025-09-10 [2] Bioconductor
## SigCheck 2.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sigclust 1.1.0.1 2022-06-27 [2] CRAN (R 4.5.1)
## sigFeature 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SigFuge 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## siggenes 1.84.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sights 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sigmajs 0.1.5 2020-06-18 [2] CRAN (R 4.5.1)
## Signac 1.16.0 2025-10-10 [2] CRAN (R 4.5.1)
## signal 1.8-1 2024-06-26 [2] CRAN (R 4.5.1)
## signalHsmm 1.5 2018-11-15 [2] CRAN (R 4.5.1)
## signatureSearch 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## signatureSearchData 1.24.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## signeR 2.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## signifinder 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sigora 3.1.1 2021-11-30 [2] CRAN (R 4.5.1)
## SigsPack 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sigsquared 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SIM 1.80.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SIMAT 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SimBenchData 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## SimBu 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SIMD 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SimDesign 2.21 2025-09-18 [2] CRAN (R 4.5.1)
## SimFFPE 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## similaRpeak 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SIMLR 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## simona 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## simPIC 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## simpIntLists 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## simpleCache 0.4.2 2021-04-17 [2] CRAN (R 4.5.1)
## simpleSeg 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## simpleSingleCell 1.33.0 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## SimpleUpset 0.1.3 2025-10-22 [2] CRAN (R 4.5.1)
## simplifyEnrichment 2.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sincell 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Single.mTEC.Transcriptomes 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## SingleCellAlleleExperiment 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SingleCellExperiment 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SingleCellMultiModal 1.22.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## SingleCellSignalR 2.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## singleCellTK 2.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SingleMoleculeFootprinting 2.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SingleMoleculeFootprintingData 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## SingleR 2.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SingleRBook 1.20.0 2025-11-03 [2] Bioconductor 3.22 (R 4.5.1)
## singscore 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SingscoreAMLMutations 1.25.0 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## SiPSiC 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sirt 4.2-133 2025-09-27 [2] CRAN (R 4.5.1)
## sitadela 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Site2Target 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sitePath 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sitmo 2.0.2 2021-10-13 [2] CRAN (R 4.5.1)
## sizepower 1.80.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sjlabelled 1.2.0 2022-04-10 [2] CRAN (R 4.5.1)
## sjmisc 2.8.11 2025-07-30 [2] CRAN (R 4.5.1)
## SKAT 2.2.5 2023-01-15 [2] CRAN (R 4.5.1)
## sketchR 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## skewr 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## skmeans 0.2-18 2024-11-13 [2] CRAN (R 4.5.1)
## slalom 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## slam 0.1-55 2024-11-13 [2] CRAN (R 4.5.1)
## slider 0.3.2 2024-10-25 [2] CRAN (R 4.5.1)
## slingshot 2.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## slippymath 0.3.1 2019-06-28 [2] CRAN (R 4.5.1)
## SLqPCR 1.76.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sm 2.2-6.0 2024-02-17 [2] CRAN (R 4.5.1)
## smacof 2.1-7 2024-10-10 [2] CRAN (R 4.5.1)
## SMAD 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## smartid 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SmartPhos 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SmartSVA 0.1.3 2017-05-28 [2] CRAN (R 4.5.1)
## smatr 3.4-8 2018-03-18 [2] CRAN (R 4.5.1)
## SMITE 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## smokingMouse 1.8.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## smoof 1.6.0.3 2023-03-10 [2] CRAN (R 4.5.1)
## smoothclust 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## smoother 1.3 2024-04-03 [2] CRAN (R 4.5.1)
## smoothie 1.0-4 2024-11-28 [2] CRAN (R 4.5.1)
## smoothr 1.2.1 2025-10-21 [2] CRAN (R 4.5.1)
## smoppix 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## smurf 1.1.8 2025-09-19 [2] CRAN (R 4.5.1)
## sn 2.1.1 2023-04-04 [2] CRAN (R 4.5.1)
## sna 2.8 2024-09-08 [2] CRAN (R 4.5.1)
## SNAData 1.56.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## SNAGEE 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SNAGEEdata 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## snakecase 0.11.1 2023-08-27 [2] CRAN (R 4.5.1)
## snapcount 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SNFtool 2.3.1 2021-06-11 [2] CRAN (R 4.5.1)
## snifter 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## snm 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## snow 0.4-4 2021-10-27 [2] CRAN (R 4.5.1)
## SnowballC 0.7.1 2023-04-25 [2] CRAN (R 4.5.1)
## snowfall 1.84-6.3 2023-11-26 [2] CRAN (R 4.5.1)
## SNPediaR 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SNPhood 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SNPhoodData 1.40.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## SNPlocs.Hsapiens.dbSNP144.GRCh37 0.99.20 2025-09-10 [2] Bioconductor
## SNPlocs.Hsapiens.dbSNP144.GRCh38 0.99.20 2025-09-10 [2] Bioconductor
## SNPlocs.Hsapiens.dbSNP155.GRCh37 0.99.24 2025-09-10 [2] Bioconductor
## SNPlocs.Hsapiens.dbSNP155.GRCh38 0.99.24 2025-09-10 [2] Bioconductor
## SNPRelate 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## snpStats 1.60.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## softImpute 1.4-3 2025-05-12 [2] CRAN (R 4.5.1)
## soGGi 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## som 0.3-5.2 2024-09-18 [2] CRAN (R 4.5.1)
## SomaDataIO 6.4.0 2025-08-29 [2] CRAN (R 4.5.1)
## SomaScan.db 0.99.10 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## SomatiCAData 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## SomaticCancerAlterations 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## SomaticSignatures 2.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SOMbrero 1.5.0 2025-10-06 [2] CRAN (R 4.5.1)
## SOMNiBUS 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sonicLength 1.4.7 2021-09-20 [2] CRAN (R 4.5.1)
## sortable 0.5.0 2023-03-26 [2] CRAN (R 4.5.1)
## sosta 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SoupX 1.6.2 2022-11-01 [2] CRAN (R 4.5.1)
## sourcetools 0.1.7-1 2023-02-01 [2] CRAN (R 4.5.1)
## sp 2.2-0 2025-02-01 [2] CRAN (R 4.5.1)
## SpaceMarkers 2.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## spacesXYZ 1.6-0 2025-06-06 [2] CRAN (R 4.5.1)
## spacetime 1.3-3 2025-02-13 [2] CRAN (R 4.5.1)
## SpaceTrooper 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## spacexr 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## spam 2.11-1 2025-01-20 [2] CRAN (R 4.5.1)
## Spaniel 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SpaNorm 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sparcl 1.0.4 2018-10-24 [2] CRAN (R 4.5.1)
## spARI 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sparkline 2.0 2016-11-12 [2] CRAN (R 4.5.1)
## sparklyr 1.9.2 2025-10-05 [2] CRAN (R 4.5.1)
## sparrow 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SparseArray 1.10.1 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SparseDC 0.1.17 2018-01-04 [2] CRAN (R 4.5.1)
## SparseM 1.84-2 2024-07-17 [2] CRAN (R 4.5.1)
## sparseMatrixStats 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sparseMVN 0.2.2 2021-10-25 [2] CRAN (R 4.5.1)
## sparsenetgls 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sparsepca 0.1.2 2018-04-11 [2] CRAN (R 4.5.1)
## SparseSignatures 2.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sparsevctrs 0.3.4 2025-05-25 [2] CRAN (R 4.5.1)
## spaSim 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SPAtest 3.1.2 2020-09-04 [2] CRAN (R 4.5.1)
## spatial 7.3-18 2025-01-01 [3] CRAN (R 4.5.1)
## SpatialCPie 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SpatialDatasets 1.8.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## spatialDE 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SpatialDecon 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## spatialDmelxsim 1.16.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## spatialEco 2.0-3 2025-09-30 [2] CRAN (R 4.5.1)
## SpatialExperiment 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SpatialExperimentIO 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SpatialExtremes 2.1-0 2022-04-19 [2] CRAN (R 4.5.1)
## spatialFDA 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SpatialFeatureExperiment 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## spatialHeatmap 2.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## spatialLIBD 1.22.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## SpatialOmicsOverlay 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SpatialPack 0.4-1 2024-09-29 [2] CRAN (R 4.5.1)
## spatialreg 1.4-2 2025-09-06 [2] CRAN (R 4.5.1)
## spatialSimGP 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SpatialTools 1.0.5 2023-07-18 [2] CRAN (R 4.5.1)
## spatstat 3.4-1 2025-09-28 [2] CRAN (R 4.5.1)
## spatstat.data 3.1-9 2025-10-18 [2] CRAN (R 4.5.1)
## spatstat.explore 3.5-3 2025-09-22 [2] CRAN (R 4.5.1)
## spatstat.geom 3.6-0 2025-09-20 [2] CRAN (R 4.5.1)
## spatstat.linnet 3.3-2 2025-09-24 [2] CRAN (R 4.5.1)
## spatstat.model 3.4-2 2025-09-28 [2] CRAN (R 4.5.1)
## spatstat.random 3.4-2 2025-09-21 [2] CRAN (R 4.5.1)
## spatstat.sparse 3.1-0 2024-06-21 [2] CRAN (R 4.5.1)
## spatstat.univar 3.1-4 2025-07-13 [2] CRAN (R 4.5.1)
## spatstat.utils 3.2-0 2025-09-20 [2] CRAN (R 4.5.1)
## spatzie 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## spBayes 0.4-8 2024-09-23 [2] CRAN (R 4.5.1)
## spData 2.3.4 2025-01-08 [2] CRAN (R 4.5.1)
## spdep 1.4-1 2025-08-31 [2] CRAN (R 4.5.1)
## spdl 0.0.5 2023-06-18 [2] CRAN (R 4.5.1)
## speaq 2.7.0 2022-05-23 [2] CRAN (R 4.5.1)
## speckle 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## specL 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SpeCond 1.64.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Spectra 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SpectralTAD 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SpectraQL 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SpectriPy 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## speedglm 0.3-5 2023-05-06 [2] CRAN (R 4.5.1)
## spelling 2.3.2 2025-08-18 [2] CRAN (R 4.5.1)
## SPEM 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SPIA 2.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SPIAT 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SPICEY 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## spicyR 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## spicyWorkflow 1.9.1 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## SpikeIn 1.52.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## SpikeInSubset 1.50.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## spikeLI 2.70.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## spiky 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## spillR 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## spkTools 1.66.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## splancs 2.01-45 2024-05-27 [2] CRAN (R 4.5.1)
## splatter 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SpliceWiz 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SplicingFactory 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SplicingGraphs 1.50.1 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SplineDV 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## splines 4.5.1 2025-09-10 [3] local
## splineTimeR 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SPLINTER 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## splitstackshape 1.4.8 2019-04-21 [2] CRAN (R 4.5.1)
## splots 1.76.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## splus2R 1.3-5 2024-02-18 [2] CRAN (R 4.5.1)
## SPONGE 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## spoon 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SpotClean 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SPOTlight 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SpotSweeper 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## spqn 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## spqnData 1.22.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## spsComps 0.3.4.0 2025-07-23 [2] CRAN (R 4.5.1)
## SPsimSeq 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## spsUtil 0.2.2.1 2025-09-28 [2] CRAN (R 4.5.1)
## SQLDataFrame 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sqldf 0.4-11 2017-06-28 [2] CRAN (R 4.5.1)
## sqlq 1.0.1 2025-09-16 [2] CRAN (R 4.5.1)
## SQN 1.0.6 2022-06-10 [2] CRAN (R 4.5.1)
## squallms 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SQUAREM 2021.1 2021-01-13 [2] CRAN (R 4.5.1)
## squash 1.0.9 2020-02-20 [2] CRAN (R 4.5.1)
## sRACIPE 2.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SRAdb 1.72.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## srnadiff 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ssc 2.1-0 2019-12-15 [2] CRAN (R 4.5.1)
## sscu 2.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sSeq 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ssize 1.84.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sSNAPPY 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ssPATHS 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ssrch 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ssviz 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## st 1.2.7 2021-11-27 [2] CRAN (R 4.5.1)
## stable 1.1.6 2022-03-02 [2] CRAN (R 4.5.1)
## stabledist 0.7-2 2024-08-17 [2] CRAN (R 4.5.1)
## StabMap 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## stabs 0.6-4 2021-01-29 [2] CRAN (R 4.5.1)
## STADyUM 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## stageR 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## standR 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## StanHeaders 2.32.10 2024-07-15 [2] CRAN (R 4.5.1)
## stars 0.6-8 2025-02-01 [2] CRAN (R 4.5.1)
## startupmsg 1.0.0 2025-01-12 [2] CRAN (R 4.5.1)
## statebins 1.4.0 2020-07-08 [2] CRAN (R 4.5.1)
## STATegRa 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Statial 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## statip 0.2.3 2019-11-17 [2] CRAN (R 4.5.1)
## statmod 1.5.1 2025-10-09 [2] CRAN (R 4.5.1)
## statnet.common 4.12.0 2025-05-30 [2] CRAN (R 4.5.1)
## stats * 4.5.1 2025-09-10 [3] local
## stats4 4.5.1 2025-09-10 [3] local
## statTarget 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## stemHypoxia 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## stepNorm 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## STexampleData 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## stJoincount 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## stopwords 2.3 2021-10-28 [2] CRAN (R 4.5.1)
## storr 1.2.6 2025-04-15 [2] CRAN (R 4.5.1)
## stPipe 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## strandCheckR 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## strawr 0.0.92 2024-07-16 [2] CRAN (R 4.5.1)
## Streamer 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## strex 2.0.1 2024-10-03 [2] CRAN (R 4.5.1)
## STRINGdb 2.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## stringdist 0.9.15 2025-01-10 [2] CRAN (R 4.5.1)
## stringfish 0.17.0 2025-07-13 [2] CRAN (R 4.5.1)
## stringi 1.8.7 2025-03-27 [2] CRAN (R 4.5.1)
## stringr 1.5.2 2025-09-08 [2] CRAN (R 4.5.1)
## strucchange 1.5-4 2024-09-02 [2] CRAN (R 4.5.1)
## struct 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Structstrings 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## structToolbox 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## StructuralVariantAnnotation 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## styler 1.11.0 2025-10-13 [2] CRAN (R 4.5.1)
## SubCellBarCode 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SubcellularSpatialData 1.6.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## subSeq 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SUITOR 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SummarizedExperiment 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## summarytools 1.1.4 2025-04-29 [2] CRAN (R 4.5.1)
## Summix 2.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SuperCell 1.0.1 2024-10-25 [2] CRAN (R 4.5.1)
## SuperCellCyto 1.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SuperExactTest 1.1.0 2022-03-23 [2] CRAN (R 4.5.1)
## superheat 0.1.0 2017-02-04 [2] CRAN (R 4.5.1)
## SuperLearner 2.0-29 2024-02-20 [2] CRAN (R 4.5.1)
## supersigs 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SuppDists 1.1-9.9 2025-03-24 [2] CRAN (R 4.5.1)
## surfaltr 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SurfR 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## survClust 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## survcomp 1.60.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## survey 4.4-8 2025-08-28 [2] CRAN (R 4.5.1)
## survival 3.8-3 2024-12-17 [3] CRAN (R 4.5.1)
## survivalROC 1.0.3.1 2022-12-05 [2] CRAN (R 4.5.1)
## survivalsvm 0.0.6 2025-04-04 [2] CRAN (R 4.5.1)
## SurvMetrics 0.5.1 2025-02-05 [2] CRAN (R 4.5.1)
## survminer 0.5.1 2025-09-02 [2] CRAN (R 4.5.1)
## survMisc 0.5.6 2022-04-07 [2] CRAN (R 4.5.1)
## survtype 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sva 3.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## svaNUMT 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## svaRetro 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## svd 0.5.8 2025-01-10 [2] CRAN (R 4.5.1)
## svglite 2.2.2 2025-10-21 [2] CRAN (R 4.5.1)
## svgPanZoom 0.3.4 2020-02-15 [2] CRAN (R 4.5.1)
## SVM2CRMdata 1.42.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## SVMDO 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## svMisc 1.4.3 2024-11-14 [2] CRAN (R 4.5.1)
## SVP 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## svUnit 1.0.8 2025-08-26 [2] CRAN (R 4.5.1)
## swamp 1.5.1 2019-12-06 [2] CRAN (R 4.5.1)
## SWATH2stats 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SwathXtend 2.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## swfdr 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## switchBox 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## switchde 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sylly 0.1-6 2020-09-20 [2] CRAN (R 4.5.1)
## sylly.en 0.1-3 2018-03-19 [2] CRAN (R 4.5.1)
## synapsis 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## synaptome.data 0.99.6 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## synaptome.db 0.99.17 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## synergyfinder 3.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SynExtend 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## synlet 2.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## SynMut 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## syntenet 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## sys 3.4.3 2024-10-04 [2] CRAN (R 4.5.1)
## sysfonts 0.8.9 2024-03-02 [2] CRAN (R 4.5.1)
## systemfonts 1.3.1 2025-10-01 [2] CRAN (R 4.5.1)
## systemPipeR 2.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## systemPipeRdata 2.14.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## systemPipeShiny 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## systemPipeTools 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## syuzhet 1.0.7 2023-08-11 [2] CRAN (R 4.5.1)
## TabulaMurisData 1.28.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## TabulaMurisSenisData 1.16.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## tadar 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TADCompare 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tagcloud 0.7.0 2025-06-28 [2] CRAN (R 4.5.1)
## TAM 4.3-25 2025-08-28 [2] CRAN (R 4.5.1)
## tanggle 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TAPseq 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## target 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TargetDecoy 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TargetScore 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TargetScoreData 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## TargetSearch 2.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TargetSearchData 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## tartare 1.24.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## taxonomizr 0.11.1 2025-03-13 [2] CRAN (R 4.5.1)
## TaxSEA 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TBSignatureProfiler 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TBX20BamSubset 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## TCA 1.2.1 2021-02-14 [2] CRAN (R 4.5.1)
## TCC 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TCGAbiolinks 2.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TCGAbiolinksGUI.data 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## TCGAcrcmiRNA 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## TCGAcrcmRNA 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## TCGAMethylation450k 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## TCGAutils 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TCGAWorkflowData 1.34.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## tcltk 4.5.1 2025-09-10 [3] local
## tcltk2 1.6.1 2025-06-01 [2] CRAN (R 4.5.1)
## TCseq 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TDbasedUFE 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TDbasedUFEadv 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TeachingDemos 2.13 2024-02-16 [2] CRAN (R 4.5.1)
## TEKRABber 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TENET 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TENET.AnnotationHub 1.1.0 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## TENET.ExperimentHub 1.2.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## tensor 1.5.1 2025-06-17 [2] CRAN (R 4.5.1)
## tensorA 0.36.2.1 2023-12-13 [2] CRAN (R 4.5.1)
## tensorflow 2.20.0 2025-08-22 [2] CRAN (R 4.5.1)
## TENxBrainData 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## TENxBUSData 1.24.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## TENxIO 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TENxPBMCData 1.28.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## tenXplore 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TENxVisiumData 1.18.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## TENxXeniumData 1.6.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## TEQC 4.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## terapadog 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ternarynet 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## terra 1.8-70 2025-09-27 [2] CRAN (R 4.5.1)
## terraTCGAdata 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tester 0.3.0 2025-09-22 [2] CRAN (R 4.5.1)
## testthat 3.2.3 2025-01-13 [2] CRAN (R 4.5.1)
## text2vec 0.6.4 2023-11-09 [2] CRAN (R 4.5.1)
## textclean 0.9.3 2018-07-23 [2] CRAN (R 4.5.1)
## textshape 1.7.5 2024-04-01 [2] CRAN (R 4.5.1)
## textshaping 1.0.4 2025-10-10 [2] CRAN (R 4.5.1)
## textstem 0.1.4 2018-04-09 [2] CRAN (R 4.5.1)
## TFARM 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tfautograph 0.3.2 2021-09-17 [2] CRAN (R 4.5.1)
## TFBSTools 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TFEA.ChIP 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TFHAZ 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TFisher 0.2.0 2018-03-21 [2] CRAN (R 4.5.1)
## TFMPvalue 0.0.9 2022-10-21 [2] CRAN (R 4.5.1)
## tfruns 1.5.4 2025-08-20 [2] CRAN (R 4.5.1)
## TFutils 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TH.data 1.1-4 2025-09-02 [2] CRAN (R 4.5.1)
## thematic 0.1.8 2025-09-29 [2] CRAN (R 4.5.1)
## threejs 0.3.4 2025-04-21 [2] CRAN (R 4.5.1)
## tibble 3.3.0 2025-06-08 [2] CRAN (R 4.5.1)
## tictoc 1.2.1 2024-03-18 [2] CRAN (R 4.5.1)
## tidybayes 3.0.7 2024-09-15 [2] CRAN (R 4.5.1)
## tidybulk 2.0.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tidyCoverage 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tidydr 0.0.6 2025-07-25 [2] CRAN (R 4.5.1)
## tidyFlowCore 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tidygate 1.0.14 2024-09-17 [2] CRAN (R 4.5.1)
## tidygraph 1.3.1 2024-01-30 [2] CRAN (R 4.5.1)
## tidyHeatmap 1.13.1 2025-10-30 [2] CRAN (R 4.5.1)
## tidyjson 0.3.2 2023-01-07 [2] CRAN (R 4.5.1)
## tidyomics 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tidyr 1.3.1 2024-01-24 [2] CRAN (R 4.5.1)
## tidysbml 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tidyselect 1.2.1 2024-03-11 [2] CRAN (R 4.5.1)
## tidyseurat 0.8.4 2025-10-02 [2] CRAN (R 4.5.1)
## tidySingleCellExperiment 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tidySpatialExperiment 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tidySummarizedExperiment 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tidytext 0.4.3 2025-07-25 [2] CRAN (R 4.5.1)
## tidytof 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tidytree 0.4.6 2023-12-12 [2] CRAN (R 4.5.1)
## tidyverse 2.0.0 2023-02-22 [2] CRAN (R 4.5.1)
## tidyxl 1.0.10 2023-12-21 [2] CRAN (R 4.5.1)
## tiff 0.1-12 2023-11-28 [2] CRAN (R 4.5.1)
## tightClust 1.1 2018-06-12 [2] CRAN (R 4.5.1)
## tigre 1.64.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tiledb 0.33.0 2025-10-01 [2] CRAN (R 4.5.1)
## TileDBArray 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tilingArray 1.88.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## timechange 0.3.0 2024-01-18 [2] CRAN (R 4.5.1)
## timecourse 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## timecoursedata 1.20.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## timeDate 4051.111 2025-10-17 [2] CRAN (R 4.5.1)
## timeOmics 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## timereg 2.0.7 2025-08-18 [2] CRAN (R 4.5.1)
## TimerQuant 1.40.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## timescape 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## timeSeries 4041.111 2024-09-22 [2] CRAN (R 4.5.1)
## timsac 1.3.8-4 2023-09-30 [2] CRAN (R 4.5.1)
## TIN 1.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tinesath1cdf 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## tinesath1probe 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## tinytest 1.4.1 2023-02-22 [2] CRAN (R 4.5.1)
## tinytex 0.57 2025-04-15 [2] CRAN (R 4.5.1)
## tippy 0.1.0 2021-01-11 [2] CRAN (R 4.5.1)
## TissueEnrich 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tissueTreg 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## TitanCNA 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tkrplot 0.0-30 2025-05-26 [2] CRAN (R 4.5.1)
## tkWidgets 1.88.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tLOH 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tm 0.7-16 2025-02-19 [2] CRAN (R 4.5.1)
## tmap 4.2 2025-09-10 [2] CRAN (R 4.5.1)
## tmaptools 3.3 2025-07-24 [2] CRAN (R 4.5.1)
## TMB 1.9.18 2025-10-13 [2] CRAN (R 4.5.1)
## TMExplorer 1.20.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## TMixClust 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TMSig 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tmvtnorm 1.7 2025-09-01 [2] CRAN (R 4.5.1)
## tnet 3.0.16 2020-02-24 [2] CRAN (R 4.5.1)
## TnT 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TOAST 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## toastui 0.4.0 2025-04-03 [2] CRAN (R 4.5.1)
## tofsimsData 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## tokenizers 0.3.0 2022-12-22 [2] CRAN (R 4.5.1)
## tomoda 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tomoseqr 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tools 4.5.1 2025-09-10 [3] local
## toOrdinal 1.3-0.0 2022-02-24 [2] CRAN (R 4.5.1)
## TOP 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## topconfects 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TopDom 0.10.1 2021-05-06 [2] CRAN (R 4.5.1)
## topdownr 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## topdownrdata 1.32.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## topGO 2.62.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## topicdoc 0.1.1 2022-07-17 [2] CRAN (R 4.5.1)
## topicmodels 0.2-17 2024-08-14 [2] CRAN (R 4.5.1)
## topologyGSA 1.5.0 2023-09-25 [2] CRAN (R 4.5.1)
## torch 0.16.3 2025-11-02 [2] CRAN (R 4.5.1)
## ToxicoGx 2.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TPP 3.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TPP2D 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tpSVG 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tracktables 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## trackViewer 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tractor.base 3.5.0 2025-10-29 [2] CRAN (R 4.5.1)
## tradeSeq 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TrajectoryGeometry 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TrajectoryUtils 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TraMineR 2.2-12 2025-06-29 [2] CRAN (R 4.5.1)
## transcriptogramer 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## transcriptR 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## transformGamPoi 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## transformr 0.1.5 2024-02-26 [2] CRAN (R 4.5.1)
## transite 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tRanslatome 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## transmogR 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## transomics2cytoscape 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TransOmicsData 1.6.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## transport 0.15-4 2024-09-16 [2] CRAN (R 4.5.1)
## TransView 1.54.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## traseR 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TreeAndLeaf 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## treeclimbR 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## treeio 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## treekoR 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## treemap 2.4-4 2023-05-25 [2] CRAN (R 4.5.1)
## TreeSummarizedExperiment 2.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TreeTools 2.0.0 2025-09-23 [2] CRAN (R 4.5.1)
## TREG 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Trendy 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TRESS 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tricycle 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TrIdent 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## triebeard 0.4.1 2023-03-04 [2] CRAN (R 4.5.1)
## trio 3.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## triplex 1.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tripr 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tRNA 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tRNAdbImport 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tRNAscanImport 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TRONCO 2.42.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## truncdist 1.0-2 2016-08-30 [2] CRAN (R 4.5.1)
## truncnorm 1.0-9 2023-03-20 [2] CRAN (R 4.5.1)
## trust 0.1-8 2020-01-10 [2] CRAN (R 4.5.1)
## TSAR 1.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TSCAN 1.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tseries 0.10-58 2024-09-23 [2] CRAN (R 4.5.1)
## tsne 0.1-3.1 2022-03-28 [2] CRAN (R 4.5.1)
## TSP 1.2-5 2025-05-27 [2] CRAN (R 4.5.1)
## ttgsea 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TTMap 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TTR 0.24.4 2023-11-28 [2] CRAN (R 4.5.1)
## ttservice 0.5.3 2025-07-10 [2] CRAN (R 4.5.1)
## tuberculosis 1.16.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## TumourMethData 1.8.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## tuneR 1.4.7 2024-04-17 [2] CRAN (R 4.5.1)
## TurboNorm 1.58.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TVTB 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tweeDEseq 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tweeDEseqCountData 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## tweedie 2.3.5 2022-08-17 [2] CRAN (R 4.5.1)
## tweenr 2.0.3 2024-02-26 [2] CRAN (R 4.5.1)
## twilight 1.86.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## twoddpcr 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## txcutr 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## TxDb.Athaliana.BioMart.plantsmart22 3.0.1 2025-09-10 [2] Bioconductor
## TxDb.Athaliana.BioMart.plantsmart28 3.2.2 2025-09-10 [2] Bioconductor
## TxDb.Celegans.UCSC.ce11.ensGene 3.15.0 2025-09-10 [2] Bioconductor
## TxDb.Celegans.UCSC.ce11.refGene 3.4.6 2025-09-10 [2] Bioconductor
## TxDb.Celegans.UCSC.ce6.ensGene 3.2.2 2025-09-10 [2] Bioconductor
## TxDb.Dmelanogaster.UCSC.dm3.ensGene 3.2.2 2025-09-10 [2] Bioconductor
## TxDb.Dmelanogaster.UCSC.dm6.ensGene 3.12.0 2025-09-10 [2] Bioconductor
## TxDb.Drerio.UCSC.danRer10.refGene 3.4.6 2025-09-10 [2] Bioconductor
## TxDb.Drerio.UCSC.danRer11.refGene 3.4.6 2025-10-14 [2] Bioconductor
## TxDb.Ggallus.UCSC.galGal5.refGene 3.12.0 2025-09-10 [2] Bioconductor
## TxDb.Hsapiens.UCSC.hg18.knownGene 3.2.2 2025-09-10 [2] Bioconductor
## TxDb.Hsapiens.UCSC.hg19.knownGene 3.22.1 2025-10-14 [2] Bioconductor
## TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts 3.2.2 2025-09-10 [2] Bioconductor
## TxDb.Hsapiens.UCSC.hg19.refGene 3.22.0 2025-11-02 [2] Bioconductor
## TxDb.Hsapiens.UCSC.hg38.knownGene 3.22.0 2025-10-08 [2] Bioconductor
## TxDb.Mmulatta.UCSC.rheMac10.refGene 3.14.0 2025-09-10 [2] Bioconductor
## TxDb.Mmusculus.UCSC.mm10.ensGene 3.4.0 2025-09-10 [2] Bioconductor
## TxDb.Mmusculus.UCSC.mm10.knownGene 3.10.0 2025-09-10 [2] Bioconductor
## TxDb.Mmusculus.UCSC.mm39.knownGene 3.22.0 2025-10-08 [2] Bioconductor
## TxDb.Mmusculus.UCSC.mm39.refGene 3.19.0 2025-09-10 [2] Bioconductor
## TxDb.Mmusculus.UCSC.mm9.knownGene 3.2.2 2025-09-10 [2] Bioconductor
## TxDb.Rnorvegicus.UCSC.rn4.ensGene 3.2.2 2025-09-10 [2] Bioconductor
## TxDb.Rnorvegicus.UCSC.rn5.refGene 3.12.0 2025-09-10 [2] Bioconductor
## TxDb.Rnorvegicus.UCSC.rn6.refGene 3.4.6 2025-09-10 [2] Bioconductor
## TxDb.Rnorvegicus.UCSC.rn7.refGene 3.15.0 2025-09-10 [2] Bioconductor
## TxDb.Scerevisiae.UCSC.sacCer3.sgdGene 3.2.2 2025-09-10 [2] Bioconductor
## txdbmaker 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tximeta 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tximport 1.38.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## tximportData 1.38.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## tzdb 0.5.0 2025-03-15 [2] CRAN (R 4.5.1)
## UCell 2.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## ucminf 1.2.2 2024-06-24 [2] CRAN (R 4.5.1)
## UCSC.utils 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## UCSCRepeatMasker 3.22.0 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## Ularcirc 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## umap 0.2.10.0 2023-02-01 [2] CRAN (R 4.5.1)
## UMI4Cats 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## uncoverappLib 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## UNDO 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## unifiedWMWqPCR 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## UniProt.ws 2.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## UniProtKeywords 0.99.7 2025-10-29 [2] Bioconductor 3.22 (R 4.5.1)
## uniqtag 1.0.1 2022-06-10 [2] CRAN (R 4.5.1)
## Uniquorn 2.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## units 1.0-0 2025-10-09 [2] CRAN (R 4.5.1)
## unittest 1.7-0 2024-08-16 [2] CRAN (R 4.5.1)
## universalmotif 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## unmarked 1.5.1 2025-09-26 [2] CRAN (R 4.5.1)
## updateObject 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## UPDhmm 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## upsetjs 1.11.1 2022-07-13 [2] CRAN (R 4.5.1)
## UpSetR 1.4.0 2019-05-22 [2] CRAN (R 4.5.1)
## urca 1.3-4 2024-05-27 [2] CRAN (R 4.5.1)
## urlchecker 1.0.1 2021-11-30 [2] CRAN (R 4.5.1)
## urltools 1.7.3.1 2025-06-12 [2] CRAN (R 4.5.1)
## usethis 3.2.1 2025-09-06 [2] CRAN (R 4.5.1)
## uSORT 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## utf8 1.2.6 2025-06-08 [2] CRAN (R 4.5.1)
## utils * 4.5.1 2025-09-10 [3] local
## uuid 1.2-1 2024-07-29 [2] CRAN (R 4.5.1)
## uwot 0.2.3 2025-02-24 [2] CRAN (R 4.5.1)
## V8 8.0.1 2025-10-10 [2] CRAN (R 4.5.1)
## VAExprs 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## validate 1.1.5 2024-02-14 [2] CRAN (R 4.5.1)
## VAM 1.1.0 2023-11-05 [2] CRAN (R 4.5.1)
## VanillaICE 1.72.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## VarCon 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## varhandle 2.0.6 2023-09-30 [2] CRAN (R 4.5.1)
## variancePartition 1.40.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## VariantAnnotation 1.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## VariantExperiment 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## VariantFiltering 1.46.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## variants 1.33.1 2025-10-28 [2] Bioconductor 3.22 (R 4.5.1)
## VariantTools 1.52.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## VariantToolsData 1.34.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## varSelRF 0.7-8 2017-07-10 [2] CRAN (R 4.5.1)
## VaSP 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## vbmp 1.78.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## vcd 1.4-13 2024-09-16 [2] CRAN (R 4.5.1)
## VCFArray 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## vcfR 1.15.0 2023-12-08 [2] CRAN (R 4.5.1)
## vctrs 0.6.5 2023-12-01 [2] CRAN (R 4.5.1)
## vdiffr 1.0.8 2024-10-31 [2] CRAN (R 4.5.1)
## VDJdive 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## VectraPolarisData 1.14.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## VegaMC 3.48.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## vegan 2.7-2 2025-10-08 [2] CRAN (R 4.5.1)
## vegclust 2.0.3 2025-05-19 [2] CRAN (R 4.5.1)
## velociraptor 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## veloviz 1.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## venn 1.12 2024-01-08 [2] CRAN (R 4.5.1)
## VennDetail 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## VennDiagram 1.7.3 2022-04-12 [2] CRAN (R 4.5.1)
## venneuler 1.1-4 2024-01-14 [2] CRAN (R 4.5.1)
## verification 1.45 2025-08-21 [2] CRAN (R 4.5.1)
## VERSO 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## VGAM 1.1-13 2025-02-12 [2] CRAN (R 4.5.1)
## vidger 1.30.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## VIM 6.2.6 2025-09-18 [2] CRAN (R 4.5.1)
## vioplot 0.5.1 2025-02-23 [2] CRAN (R 4.5.1)
## viper 1.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## vipor 0.4.7 2023-12-18 [2] CRAN (R 4.5.1)
## viridis 0.6.5 2024-01-29 [2] CRAN (R 4.5.1)
## viridisLite 0.4.2 2023-05-02 [2] CRAN (R 4.5.1)
## visdat 0.6.0 2023-02-02 [2] CRAN (R 4.5.1)
## ViSEAGO 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## VisiumIO 1.6.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## visiumStitched 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## visNetwork 2.1.4 2025-09-04 [2] CRAN (R 4.5.1)
## vissE 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## vmrseq 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Voyager 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## VplotR 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## vroom 1.6.6 2025-09-19 [2] CRAN (R 4.5.1)
## vsclust 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## vsn 3.78.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## vtpnet 0.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## vulcan 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## vulcandata 1.32.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## waddR 1.24.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## waiter 0.2.5.1 2025-09-23 [2] CRAN (R 4.5.1)
## waldo 0.6.2 2025-07-11 [2] CRAN (R 4.5.1)
## warp 0.2.1 2023-11-02 [2] CRAN (R 4.5.1)
## wateRmelon 2.16.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## wavClusteR 2.44.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## waveslim 1.8.5 2024-06-04 [2] CRAN (R 4.5.1)
## wavethresh 4.7.3 2024-08-19 [2] CRAN (R 4.5.1)
## wdm 0.2.6 2025-01-07 [2] CRAN (R 4.5.1)
## weaver 1.76.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## webbioc 1.82.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## webchem 1.3.1 2025-07-16 [2] CRAN (R 4.5.1)
## webdriver 1.0.6 2021-01-12 [2] CRAN (R 4.5.1)
## WeberDivechaLCdata 1.12.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## webshot 0.5.5 2023-06-26 [2] CRAN (R 4.5.1)
## websocket 1.4.4 2025-04-10 [2] CRAN (R 4.5.1)
## webutils 1.2.2 2024-10-04 [2] CRAN (R 4.5.1)
## WeightedCluster 1.8-1 2024-12-10 [2] CRAN (R 4.5.1)
## weights 1.1.2 2025-06-18 [2] CRAN (R 4.5.1)
## WeightSVM 1.7-16 2024-10-12 [2] CRAN (R 4.5.1)
## weitrix 1.22.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## WES.1KG.WUGSC 1.42.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## wesanderson 0.3.7 2023-10-31 [2] CRAN (R 4.5.1)
## WGCNA 1.73 2024-09-18 [2] CRAN (R 4.5.1)
## WGSmapp 1.22.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## wheatmap 0.2.0 2022-02-27 [2] CRAN (R 4.5.1)
## whisker 0.4.1 2022-12-05 [2] CRAN (R 4.5.1)
## widgetTools 1.88.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## widyr 0.1.5 2022-09-13 [2] CRAN (R 4.5.1)
## wiggleplotr 1.34.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## withr 3.0.2 2024-10-28 [2] CRAN (R 4.5.1)
## wk 0.9.4 2024-10-11 [2] CRAN (R 4.5.1)
## word2vec 0.4.0 2023-10-07 [2] CRAN (R 4.5.1)
## wordcloud 2.6 2018-08-24 [2] CRAN (R 4.5.1)
## wordcloud2 0.2.1 2018-01-03 [2] CRAN (R 4.5.1)
## wpm 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## wppi 1.18.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Wrench 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## writexl 1.5.4 2025-04-15 [2] CRAN (R 4.5.1)
## WriteXLS 6.8.0 2025-05-22 [2] CRAN (R 4.5.1)
## wrMisc 1.15.4 2025-06-18 [2] CRAN (R 4.5.1)
## wrswoR 1.1.1 2020-07-26 [2] CRAN (R 4.5.1)
## XAItest 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## xCell2 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## xcms 4.8.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## xcore 1.14.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## xcoredata 1.14.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## XDE 2.56.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## XeniumIO 1.2.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## xenLite 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## Xeva 1.26.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## xfun 0.54 2025-10-30 [2] CRAN (R 4.5.1)
## xgboost 1.7.11.1 2025-05-15 [2] CRAN (R 4.5.1)
## XhybCasneuf 1.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## XINA 1.28.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## XLConnect 1.2.2 2025-05-26 [2] CRAN (R 4.5.1)
## xlsx 0.6.5 2020-11-10 [2] CRAN (R 4.5.1)
## xlsxjars 0.9.0 2025-07-02 [2] CRAN (R 4.5.1)
## xmapbridge 1.68.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## XML 3.99-0.19 2025-08-22 [2] CRAN (R 4.5.1)
## xml2 1.4.1 2025-10-27 [2] CRAN (R 4.5.1)
## xmlparsedata 1.0.5 2021-03-06 [2] CRAN (R 4.5.1)
## xopen 1.0.1 2024-04-25 [2] CRAN (R 4.5.1)
## xtable 1.8-4 2019-04-21 [2] CRAN (R 4.5.1)
## XtraSNPlocs.Hsapiens.dbSNP144.GRCh37 0.99.12 2025-09-10 [2] Bioconductor
## XtraSNPlocs.Hsapiens.dbSNP144.GRCh38 0.99.12 2025-09-10 [2] Bioconductor
## xts 0.14.1 2024-10-15 [2] CRAN (R 4.5.1)
## XVector 0.50.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## yaImpute 1.0-34.1 2024-09-21 [2] CRAN (R 4.5.1)
## yaml 2.3.10 2024-07-26 [2] CRAN (R 4.5.1)
## yamss 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## YAPSA 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## yardstick 1.3.2 2025-01-22 [2] CRAN (R 4.5.1)
## yarn 1.36.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## yeast2.db 3.13.0 2025-09-10 [2] Bioconductor
## yeastCC 1.50.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## yeastExpData 0.56.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## yeastGSData 0.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## yeastNagalakshmi 1.46.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## yeastRNASeq 0.48.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## yesno 0.1.3 2024-07-26 [2] CRAN (R 4.5.1)
## yulab.utils 0.2.1 2025-08-19 [2] CRAN (R 4.5.1)
## zCompositions 1.5.0-5 2025-06-30 [2] CRAN (R 4.5.1)
## zeallot 0.2.0 2025-05-27 [2] CRAN (R 4.5.1)
## zebrafishRNASeq 1.30.0 2025-10-30 [2] Bioconductor 3.22 (R 4.5.1)
## zellkonverter 1.20.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## zenith 1.12.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## zFPKM 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## zigg 0.0.2 2025-02-07 [2] CRAN (R 4.5.1)
## zinbwave 1.32.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## zip 2.3.3 2025-05-13 [2] CRAN (R 4.5.1)
## zitools 1.4.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
## zoo 1.8-14 2025-04-10 [2] CRAN (R 4.5.1)
## ZygosityPredictor 1.10.0 2025-11-02 [2] Bioconductor 3.22 (R 4.5.1)
##
## [1] /tmp/Rtmpk7RTXb/Rinst3de415479ea740
## [2] /home/biocbuild/bbs-3.22-bioc/R/site-library
## [3] /home/biocbuild/bbs-3.22-bioc/R/library
## * ββ Packages attached to the search path.
##
## β Python configuration ββββββββββββββββββββββββββββββββββββββββββββββββββββ
## Python is not available
##
## βββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββReferences
Assigning cell types with SingleR. 2023. https://bioconductor.org/books/3.17/SingleRBook.
Orchestrating Single-Cell Analysis with Bioconductor. n.d. https://bioconductor.org/books/devel/OSCA.
The csaw Book. 2023. https://bioconductor.org/books/devel/csawBook.
Wickham, Hadley, Jay Hesselberth, and MaΓ«lle Salmon. 2022. Pkgdown: Make Static HTML Documentation for a Package. https://CRAN.R-project.org/package=pkgdown.
Xie, Yihui. 2014. βKnitr: A Comprehensive Tool for Reproducible Research in R.β In Implementing Reproducible Computational Research, edited by Victoria Stodden, Friedrich Leisch, and Roger D. Peng. Chapman; Hall/CRC.
βββ. 2016. Bookdown: Authoring Books and Technical Documents with R Markdown. Boca Raton, Florida: Chapman; Hall/CRC. https://bookdown.org/yihui/bookdown.