ldblock
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ldblock.
data structures for linkage disequilibrium measures in populations
Bioconductor version: 3.9
Define data structures for linkage disequilibrium measures in populations.
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("ldblock")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ldblock")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ldblock")| ldblock package: linkage disequilibrium data structures | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Software |
| Version | 1.14.3 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.1), methods, Homo.sapiens |
| Imports | Matrix, snpStats, VariantAnnotation, GenomeInfoDb, Rsamtools, GO.db, GenomicFiles(>= 1.13.6), BiocGenerics(>= 0.25.1), EnsDb.Hsapiens.v75, ensembldb, httr |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, BiocGenerics, knitr, gQTLstats |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | gQTLstats |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ldblock_1.14.3.tar.gz |
| Windows Binary | ldblock_1.14.3.zip |
| Mac OS X 10.11 (El Capitan) | ldblock_1.14.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ldblock |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ldblock |
| Bioc Package Browser | https://code.bioconductor.org/browse/ldblock/ |
| Package Short Url | https://bioconductor.org/packages/ldblock/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |