gQTLstats
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see gQTLstats.
gQTLstats: computationally efficient analysis for eQTL and allied studies
Bioconductor version: 3.9
computationally efficient analysis of eQTL, mQTL, dsQTL, etc.
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("gQTLstats")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gQTLstats")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gQTLstats")| gQTLstats: statistics for genetics of genomic features | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Software |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.1.0), Homo.sapiens |
| Imports | methods, snpStats, BiocGenerics, S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicFiles, GenomicRanges, SummarizedExperiment, VariantAnnotation, Biobase, BatchJobs, gQTLBase, limma, mgcv, dplyr, AnnotationDbi, GenomicFeatures, ggplot2, reshape2, doParallel, foreach, ffbase, BBmisc, beeswarm, HardyWeinberg, graphics, stats, utils, shiny, plotly, erma, ggbeeswarm |
| System Requirements | |
| URL |
See More
| Suggests | geuvPack, geuvStore2, Rsamtools, knitr, rmarkdown, ggbio, BiocStyle, RUnit, multtest, gwascat, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, ldblock |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | gwascat, ldblock, parglms, yriMulti |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gQTLstats_1.16.0.tar.gz |
| Windows Binary | gQTLstats_1.16.0.zip |
| Mac OS X 10.11 (El Capitan) | gQTLstats_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gQTLstats |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gQTLstats |
| Bioc Package Browser | https://code.bioconductor.org/browse/gQTLstats/ |
| Package Short Url | https://bioconductor.org/packages/gQTLstats/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |