- Home
- Bioconductor 3.5
- Experiment Packages
- pathprintGEOData
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pathprintGEOData")
In most cases, you don't need to download the package archive at all.
pathprintGEOData
|
|
|
|
Pathway fingerprint vectors representing a subsection of arrays from the GEO data repository
Bioconductor version: Release (3.5)
Pathway Fingerprint vectors that have been pre-calculated for ~160,000 publicly available arrays from the GEO corpus, spanning 6 species and 31 platforms, together with their associated metadata.
Author: Gabriel Altschuler
Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>
Citation (from within R,
enter citation("pathprintGEOData")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pathprintGEOData")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pathprintGEOData")
| R Script | pathprintGEOData | |
| Reference Manual |
Details
| biocViews | Caenorhabditis_elegans_Data, Danio_rerio_Data, Drosophila_melanogaster_Data, ExperimentData, ExpressionData, GEO, Genome, Homo_sapiens_Data, MicroarrayData, Mus_musculus_Data, OneChannelData, PathwayInteractionDatabase, Rattus_norvegicus_Data, SequencingData, TwoChannelData |
| Version | 1.2.0 |
| License | GPL |
| Depends | R (>= 3.4) |
| Imports | |
| LinkingTo | |
| Suggests | pathprint, SummarizedExperiment |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | pathprint |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pathprintGEOData_1.2.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/pathprintGEOData |
| Package Short Url | http://bioconductor.org/packages/pathprintGEOData/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
