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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pathprint")
In most cases, you don't need to download the package archive at all.
pathprint
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Pathway fingerprinting for analysis of gene expression arrays
Bioconductor version: Release (3.5)
Algorithms to convert a gene expression array provided as an expression table or a GEO reference to a 'pathway fingerprint', a vector of discrete ternary scores representing high (1), low(-1) or insignificant (0) expression in a suite of pathways.
Author: Gabriel Altschuler
Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>
Citation (from within R,
enter citation("pathprint")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pathprint")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pathprint")
| R Script | pathprint | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GeneExpression, KEGG, Reactome, Software, Transcription |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | GPL |
| Depends | R (>= 3.4) |
| Imports | stats, utils |
| LinkingTo | |
| Suggests | ALL, GEOquery, pathprintGEOData, SummarizedExperiment |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | pathprintGEOData |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pathprint_1.4.0.tar.gz |
| Windows Binary | pathprint_1.4.0.zip |
| Mac OS X 10.11 (El Capitan) | pathprint_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/pathprint |
| Package Short Url | http://bioconductor.org/packages/pathprint/ |
| Package Downloads Report | Download Stats |
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