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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TCGAbiolinksGUI")
In most cases, you don't need to download the package archive at all.
TCGAbiolinksGUI
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"TCGAbiolinksGUI: A Graphical User Interface to analyze cancer molecular and clinical data"
Bioconductor version: Release (3.5)
"TCGAbiolinksGUI: A Graphical User Interface to analyze cancer molecular and clinical data. A demo version of GUI is found in https://tcgabiolinksgui.shinyapps.io/tcgabiolinks/"
Author: Tiago Chedraoui Silva <tiagochst at gmail.com>, Antonio Colaprico <antonio.colaprico at ulb.ac.be>, Catharina Olsen <colsen at ulb.ac.be>, Michele Ceccarelli, Gianluca Bontempi <gbonte at ulb.ac.be>, Benjamin P. Berman <Benjamin.Berman at cshs.org>, Houtan Noushmehr <houtana at gmail.com>
Maintainer: Tiago C. Silva <tiagochst at gmail.com>
Citation (from within R,
enter citation("TCGAbiolinksGUI")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TCGAbiolinksGUI")
Documentation
| HTML | R Script | 1. Introduction |
| HTML | R Script | 2. Data menu |
| HTML | 3. Analysis menu | |
| HTML | 4. Integratice analysis menu | |
| HTML | 5. Cases study | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DNAMethylation, DNASeq, DifferentialExpression, DifferentialMethylation, GUI, GeneExpression, GeneRegulation, Genetics, MethylationArray, Network, Pathways, Sequencing, Software, StatisticalMethod |
| Version | 1.2.1 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | GPL (>= 3) |
| Depends | R (>= 3.3.1), shinydashboard (>= 0.5.3) |
| Imports | shiny (>= 0.14.1), downloader (>= 0.4), grid, plotly, readr, stringr (>= 1.1.0), SummarizedExperiment, ggrepel, data.table, shinyFiles (>= 0.6.2), ggplot2 (>= 2.1.0), pathview, ELMER(>= 1.2.1), clusterProfiler, parallel, TCGAbiolinks(>= 2.2.4), shinyjs (>= 0.7), colourpicker, shinyBS (>= 0.61) |
| LinkingTo | |
| Suggests | testthat, knitr, roxygen2, devtools, rvest, xml2, BiocStyle, animation, pander |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TCGAbiolinksGUI_1.2.1.tar.gz |
| Windows Binary | TCGAbiolinksGUI_1.2.1.zip |
| Mac OS X 10.11 (El Capitan) | TCGAbiolinksGUI_1.2.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TCGAbiolinksGUI |
| Package Short Url | http://bioconductor.org/packages/TCGAbiolinksGUI/ |
| Package Downloads Report | Download Stats |
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