Last updated on 2025-12-04 11:50:29 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.6 | 154.35 | 198.65 | 353.00 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.6 | 103.02 | 145.03 | 248.05 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.6 | 720.00 | -43.61 | 676.39 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.6 | 427.00 | 194.63 | 621.63 | ERROR | |
| r-devel-windows-x86_64 | 0.6 | 173.00 | 231.00 | 404.00 | OK | |
| r-patched-linux-x86_64 | 0.6 | 157.51 | 189.61 | 347.12 | OK | |
| r-release-linux-x86_64 | 0.6 | 163.07 | 190.60 | 353.67 | OK | |
| r-release-macos-arm64 | 0.6 | OK | ||||
| r-release-macos-x86_64 | 0.6 | 73.00 | 181.00 | 254.00 | OK | |
| r-release-windows-x86_64 | 0.6 | 186.00 | 248.00 | 434.00 | OK | |
| r-oldrel-macos-arm64 | 0.6 | NOTE | ||||
| r-oldrel-macos-x86_64 | 0.6 | 68.00 | 194.00 | 262.00 | NOTE | |
| r-oldrel-windows-x86_64 | 0.6 | 219.00 | 289.00 | 508.00 | OK |
Version: 0.6
Check: examples
Result: ERROR
Running examples in ‘targeted-Ex.R’ failed
The error most likely occurred in:
> ### Name: learner_xgboost
> ### Title: Construct a learner
> ### Aliases: learner_xgboost
>
> ### ** Examples
>
> n <- 1e3
> x1 <- rnorm(n, sd = 2)
> x2 <- rnorm(n)
> lp <- x2*x1 + cos(x1)
> yb <- rbinom(n, 1, lava::expit(lp))
> y <- lp + rnorm(n, sd = 0.5**.5)
> d0 <- data.frame(y, yb, x1, x2)
>
> # regression
> lr <- learner_xgboost(y ~ x1 + x2, nrounds = 5)
> lr$estimate(d0)
Warning in throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized), :
Passed unrecognized parameters: verbose. This warning will become an error in a future version.
Warning in throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version.
Warning in throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'eta' has been renamed to 'learning_rate'. This warning will become an error in a future version.
Warning in throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'lambda' has been renamed to 'reg_lambda'. This warning will become an error in a future version.
Error in (function (x, y, objective = NULL, nrounds = 100L, max_depth = NULL, :
argument "y" is missing, with no default
Calls: <Anonymous> ... <Anonymous> -> process.y.margin.and.objective -> NROW
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.6
Check: tests
Result: ERROR
Running ‘tinytest.R’ [40s/152s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if (requireNamespace("tinytest", quietly = TRUE)) {
+
+ ## future::plan("sequential")
+ Sys.setenv("OMP_THREAD_LIMIT" = 2)
+ options(Ncpus = 1)
+ data.table::setDTthreads(1)
+
+ tinytest::test_package("targeted")
+ }
test_cate.R................... 0 tests
test_cate.R................... 0 tests
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test_cate.R................... 0 tests
test_cate.R................... 1 tests <1b>[0;32mOK<1b>[0m
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test_cate.R................... 2 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 11 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 11 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 23 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 23 tests <1b>[0;32mOK<1b>[0m OMP: Warning #96: Cannot form a team with 8 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
test_cate.R................... 27 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 27 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 27 tests <1b>[0;32mOK<1b>[0m
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test_cate.R................... 31 tests <1b>[0;32mOK<1b>[0m
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test_cate.R................... 31 tests <1b>[0;32mOK<1b>[0m
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test_cate.R................... 31 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 31 tests <1b>[0;32mOK<1b>[0m
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test_cate.R................... 35 tests <1b>[0;32mOK<1b>[0m
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test_cate.R................... 36 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m47.5s<1b>[0m
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test_cumhaz.R................. 11 tests <1b>[0;32mOK<1b>[0m
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test_cumhaz.R................. 27 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 27 tests <1b>[0;32mOK<1b>[0m
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test_cumhaz.R................. 28 tests <1b>[0;32mOK<1b>[0m
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test_cumhaz.R................. 28 tests <1b>[0;32mOK<1b>[0m
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test_cumhaz.R................. 34 tests <1b>[0;32mOK<1b>[0m
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test_cumhaz.R................. 41 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 41 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 41 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 41 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 41 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 42 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 42 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 42 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 43 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 43 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 43 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 44 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 44 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 44 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 44 tests <1b>[0;32mOK<1b>[0m
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test_cumhaz.R................. 45 tests <1b>[0;32mOK<1b>[0m
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test_cumhaz.R................. 46 tests <1b>[0;32mOK<1b>[0m
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test_cumhaz.R................. 51 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 51 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
Attaching package: 'survival'
The following object is masked from 'package:future':
cluster
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 63 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 63 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 70 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 70 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 77 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m29.8s<1b>[0m
test_design.R................. 0 tests
test_design.R................. 0 tests
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test_design.R................. 11 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 11 tests <1b>[0;32mOK<1b>[0m
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test_design.R................. 14 tests <1b>[0;32mOK<1b>[0m
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test_design.R................. 30 tests <1b>[0;32mOK<1b>[0m
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test_design.R................. 55 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 55 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 62 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 62 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 64 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.6s<1b>[0m
test_expand_list.R............ 0 tests
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test_expand_list.R............ 0 tests
test_expand_list.R............ 18 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m24ms<1b>[0m
test_intersection_sw.R........ 0 tests
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test_intersection_sw.R........ 0 tests <1b>[0;36m24ms<1b>[0m
test_intsurv.R................ 0 tests
test_intsurv.R................ 0 tests
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test_intsurv.R................ 1 tests <1b>[0;32mOK<1b>[0m
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test_intsurv.R................ 2 tests <1b>[0;32mOK<1b>[0m
test_intsurv.R................ 2 tests <1b>[0;32mOK<1b>[0m
test_intsurv.R................ 2 tests <1b>[0;32mOK<1b>[0m
test_intsurv.R................ 3 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.2s<1b>[0m
test_learner.R................ 0 tests
test_learner.R................ 0 tests
test_learner.R................ 0 tests
test_learner.R................ 0 tests
test_learner.R................ 0 tests
test_learner.R................ 0 tests
test_learner.R................ 0 tests
test_learner.R................ 5 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 5 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 13 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 13 tests <1b>[0;32mOK<1b>[0m
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test_learner.R................ 24 tests <1b>[0;32mOK<1b>[0m
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test_learner.R................ 28 tests <1b>[0;32mOK<1b>[0m
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test_learner.R................ 32 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 43 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 43 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 45 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 45 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 51 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m4.1s<1b>[0m
test_learner_expand_grid.R.... 0 tests
test_learner_expand_grid.R.... 1 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 1 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 2 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 2 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 3 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 3 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 4 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 4 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 4 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 5 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 6 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 6 tests <1b>[0;32mOK<1b>[0m
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test_learner_expand_grid.R.... 8 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.3s<1b>[0m
test_learner_glm.R............ 0 tests
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test_learner_glm.R............ 8 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.8s<1b>[0m
test_learner_glmnet.R......... 0 tests
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test_learner_grf.R............ 7 tests <1b>[0;32mOK<1b>[0m
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test_learner_grf.R............ 9 tests <1b>[0;32mOK<1b>[0m
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test_learner_grf.R............ 10 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 10 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 10 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m10.7s<1b>[0m
test_learner_hal.R............ 0 tests
test_learner_hal.R............ 0 tests
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test_learner_hal.R............ 3 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m3.8s<1b>[0m
test_learner_isoreg.R......... 0 tests
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test_learner_isoreg.R......... 0 tests
test_learner_isoreg.R......... 0 tests
test_learner_isoreg.R......... 0 tests
test_learner_isoreg.R......... 0 tests
test_learner_isoreg.R......... 0 tests
test_learner_isoreg.R......... 0 tests
test_learner_isoreg.R......... 0 tests
test_learner_isoreg.R......... 1 tests <1b>[0;32mOK<1b>[0m
test_learner_isoreg.R......... 2 tests <1b>[0;32mOK<1b>[0m
test_learner_isoreg.R......... 2 tests <1b>[0;32mOK<1b>[0m
test_learner_isoreg.R......... 3 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m92ms<1b>[0m
test_learner_mars.R........... 0 tests
test_learner_mars.R........... 0 tests
test_learner_mars.R........... 0 tests
test_learner_mars.R........... 0 tests
test_learner_mars.R........... 0 tests
test_learner_mars.R........... 0 tests
test_learner_mars.R........... 5 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m1.6s<1b>[0m
test_learner_naivebayes.R..... 0 tests
test_learner_naivebayes.R..... 0 tests
test_learner_naivebayes.R..... 0 tests
test_learner_naivebayes.R..... 0 tests
test_learner_naivebayes.R..... 0 tests
test_learner_naivebayes.R..... 0 tests
test_learner_naivebayes.R..... 1 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 2 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 2 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 2 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 2 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 3 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 4 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 5 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 5 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 5 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 6 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 7 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 7 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 7 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 7 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 7 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 7 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 8 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 8 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 8 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 9 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 9 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 9 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 9 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 9 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 9 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 9 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 10 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m3.1s<1b>[0m
test_learner_sl.R............. 0 tests
test_learner_sl.R............. 0 tests
test_learner_sl.R............. 0 tests
test_learner_sl.R............. 0 tests
test_learner_sl.R............. 5 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m6.8s<1b>[0m
test_learner_stratify.R....... 0 tests
test_learner_stratify.R....... 0 tests
test_learner_stratify.R....... 0 tests
test_learner_stratify.R....... 3 tests <1b>[0;32mOK<1b>[0m
test_learner_stratify.R....... 3 tests <1b>[0;32mOK<1b>[0m
test_learner_stratify.R....... 5 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m1.4s<1b>[0m
test_learner_svm.R............ 0 tests
test_learner_svm.R............ 0 tests
test_learner_svm.R............ 0 tests
test_learner_svm.R............ 0 tests
test_learner_svm.R............ 0 tests
test_learner_svm.R............ 1 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 2 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 2 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 2 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 2 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 2 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 2 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 2 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 3 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 3 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 3 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 4 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 5 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 5 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 5 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 6 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 7 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 8 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 8 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 9 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 9 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 9 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 10 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m4.1s<1b>[0m
test_learner_xgboost.R........ 0 tests
test_learner_xgboost.R........ 0 tests
test_learner_xgboost.R........ 0 tests
test_learner_xgboost.R........ 0 tests Error in (function (x, y, objective = NULL, nrounds = 100L, max_depth = NULL, :
argument "y" is missing, with no default
Calls: <Anonymous> ... <Anonymous> -> process.y.margin.and.objective -> NROW
In addition: Warning messages:
1: In throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized), :
Passed unrecognized parameters: verbose. This warning will become an error in a future version.
2: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version.
3: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'eta' has been renamed to 'learning_rate'. This warning will become an error in a future version.
4: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'lambda' has been renamed to 'reg_lambda'. This warning will become an error in a future version.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.6
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘predictionclass.Rmd’ using rmarkdown
Quitting from predictionclass.Rmd:143-145 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! argument "y" is missing, with no default
---
Backtrace:
▆
1. └─lr_xgboost$estimate(data = pbc)
2. └─private$fitfun(data, ...)
3. ├─base::structure(do.call(private$init.estimate, args), design = summary(xx))
4. ├─base::do.call(private$init.estimate, args)
5. └─targeted (local) `<fn>`(...)
6. ├─base::do.call(...)
7. └─xgboost (local) `<fn>`(...)
8. └─xgboost:::process.y.margin.and.objective(...)
9. └─base::NROW(y)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'predictionclass.Rmd' failed with diagnostics:
argument "y" is missing, with no default
--- failed re-building ‘predictionclass.Rmd’
--- re-building ‘riskregression.Rmd’ using rmarkdown
OMP: Warning #96: Cannot form a team with 8 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
--- finished re-building ‘riskregression.Rmd’
SUMMARY: processing the following file failed:
‘predictionclass.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.6
Check: tests
Result: ERROR
Running ‘tinytest.R’ [39s/106s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if (requireNamespace("tinytest", quietly = TRUE)) {
+
+ ## future::plan("sequential")
+ Sys.setenv("OMP_THREAD_LIMIT" = 2)
+ options(Ncpus = 1)
+ data.table::setDTthreads(1)
+
+ tinytest::test_package("targeted")
+ }
test_cate.R................... 0 tests
test_cate.R................... 0 tests
test_cate.R................... 0 tests
test_cate.R................... 0 tests
test_cate.R................... 0 tests
test_cate.R................... 0 tests
test_cate.R................... 0 tests
test_cate.R................... 0 tests
test_cate.R................... 0 tests
test_cate.R................... 1 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 2 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 2 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 11 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 11 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 23 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 23 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 27 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 27 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 27 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 31 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 31 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 31 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 31 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 31 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 31 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 31 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 31 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 31 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 35 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 35 tests <1b>[0;32mOK<1b>[0m
test_cate.R................... 36 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m30.5s<1b>[0m
test_cumhaz.R................. 0 tests
test_cumhaz.R................. 0 tests
test_cumhaz.R................. 0 tests
test_cumhaz.R................. 0 tests
test_cumhaz.R................. 0 tests
test_cumhaz.R................. 0 tests
test_cumhaz.R................. 0 tests
test_cumhaz.R................. 0 tests
test_cumhaz.R................. 0 tests
test_cumhaz.R................. 0 tests
test_cumhaz.R................. 0 tests
test_cumhaz.R................. 0 tests
test_cumhaz.R................. 0 tests
test_cumhaz.R................. 0 tests
test_cumhaz.R................. 0 tests
test_cumhaz.R................. 0 tests
test_cumhaz.R................. 5 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 5 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 5 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 5 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 5 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 6 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 6 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 11 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 11 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 11 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 11 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 11 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 11 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 11 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 12 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 12 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 17 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 17 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 22 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 22 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 22 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 27 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 27 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 27 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 28 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 28 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 28 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 28 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 29 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 34 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 34 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 34 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 34 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 34 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 35 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 35 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 40 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 41 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 41 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 41 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 41 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 41 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 42 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 42 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 42 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 43 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 43 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 43 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 44 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 44 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 44 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 44 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 45 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 45 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 46 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 46 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 51 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 51 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 51 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
Attaching package: 'survival'
The following object is masked from 'package:future':
cluster
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 56 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 63 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 63 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 70 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 70 tests <1b>[0;32mOK<1b>[0m
test_cumhaz.R................. 77 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m27.4s<1b>[0m
test_design.R................. 0 tests
test_design.R................. 0 tests
test_design.R................. 0 tests
test_design.R................. 0 tests
test_design.R................. 0 tests
test_design.R................. 11 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 11 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 14 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 14 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 30 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 30 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 30 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 36 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 36 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 38 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 38 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 48 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 48 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 55 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 55 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 62 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 62 tests <1b>[0;32mOK<1b>[0m
test_design.R................. 64 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.3s<1b>[0m
test_expand_list.R............ 0 tests
test_expand_list.R............ 0 tests
test_expand_list.R............ 0 tests
test_expand_list.R............ 18 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m12ms<1b>[0m
test_intersection_sw.R........ 0 tests
test_intersection_sw.R........ 0 tests
test_intersection_sw.R........ 0 tests
test_intersection_sw.R........ 0 tests
test_intersection_sw.R........ 0 tests
test_intersection_sw.R........ 0 tests
test_intersection_sw.R........ 0 tests
test_intersection_sw.R........ 0 tests
test_intersection_sw.R........ 0 tests <1b>[0;36m12ms<1b>[0m
test_intsurv.R................ 0 tests
test_intsurv.R................ 0 tests
test_intsurv.R................ 0 tests
test_intsurv.R................ 0 tests
test_intsurv.R................ 0 tests
test_intsurv.R................ 0 tests
test_intsurv.R................ 0 tests
test_intsurv.R................ 0 tests
test_intsurv.R................ 0 tests
test_intsurv.R................ 0 tests
test_intsurv.R................ 0 tests
test_intsurv.R................ 0 tests
test_intsurv.R................ 0 tests
test_intsurv.R................ 0 tests
test_intsurv.R................ 0 tests
test_intsurv.R................ 0 tests
test_intsurv.R................ 0 tests
test_intsurv.R................ 0 tests
test_intsurv.R................ 0 tests
test_intsurv.R................ 1 tests <1b>[0;32mOK<1b>[0m
test_intsurv.R................ 2 tests <1b>[0;32mOK<1b>[0m
test_intsurv.R................ 2 tests <1b>[0;32mOK<1b>[0m
test_intsurv.R................ 2 tests <1b>[0;32mOK<1b>[0m
test_intsurv.R................ 2 tests <1b>[0;32mOK<1b>[0m
test_intsurv.R................ 3 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m49ms<1b>[0m
test_learner.R................ 0 tests
test_learner.R................ 0 tests
test_learner.R................ 0 tests
test_learner.R................ 0 tests
test_learner.R................ 0 tests
test_learner.R................ 0 tests
test_learner.R................ 0 tests
test_learner.R................ 5 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 5 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 13 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 13 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 17 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 17 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 24 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 24 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 28 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 28 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 32 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 32 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 43 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 43 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 45 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 45 tests <1b>[0;32mOK<1b>[0m
test_learner.R................ 51 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m1.7s<1b>[0m
test_learner_expand_grid.R.... 0 tests
test_learner_expand_grid.R.... 1 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 1 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 2 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 2 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 3 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 3 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 4 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 4 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 4 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 5 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 6 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 6 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 7 tests <1b>[0;32mOK<1b>[0m
test_learner_expand_grid.R.... 8 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.2s<1b>[0m
test_learner_glm.R............ 0 tests
test_learner_glm.R............ 0 tests
test_learner_glm.R............ 0 tests
test_learner_glm.R............ 0 tests
test_learner_glm.R............ 0 tests
test_learner_glm.R............ 0 tests
test_learner_glm.R............ 8 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.6s<1b>[0m
test_learner_glmnet.R......... 0 tests
test_learner_glmnet.R......... 0 tests
test_learner_glmnet.R......... 0 tests
test_learner_glmnet.R......... 0 tests
test_learner_glmnet.R......... 0 tests
test_learner_glmnet.R......... 0 tests
test_learner_glmnet.R......... 8 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m10.1s<1b>[0m
test_learner_grf.R............ 0 tests
test_learner_grf.R............ 0 tests
test_learner_grf.R............ 0 tests
test_learner_grf.R............ 0 tests
test_learner_grf.R............ 0 tests
test_learner_grf.R............ 0 tests
test_learner_grf.R............ 0 tests
test_learner_grf.R............ 1 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 2 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 2 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 2 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 3 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 3 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 4 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 5 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 5 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 6 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 7 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 7 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 7 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 7 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 8 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 9 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 9 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 9 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 9 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 10 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 10 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 10 tests <1b>[0;32mOK<1b>[0m
test_learner_grf.R............ 10 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m8.4s<1b>[0m
test_learner_hal.R............ 0 tests
test_learner_hal.R............ 0 tests
test_learner_hal.R............ 0 tests
test_learner_hal.R............ 0 tests
test_learner_hal.R............ 3 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m2.7s<1b>[0m
test_learner_isoreg.R......... 0 tests
test_learner_isoreg.R......... 0 tests
test_learner_isoreg.R......... 0 tests
test_learner_isoreg.R......... 0 tests
test_learner_isoreg.R......... 0 tests
test_learner_isoreg.R......... 0 tests
test_learner_isoreg.R......... 0 tests
test_learner_isoreg.R......... 0 tests
test_learner_isoreg.R......... 0 tests
test_learner_isoreg.R......... 1 tests <1b>[0;32mOK<1b>[0m
test_learner_isoreg.R......... 2 tests <1b>[0;32mOK<1b>[0m
test_learner_isoreg.R......... 2 tests <1b>[0;32mOK<1b>[0m
test_learner_isoreg.R......... 3 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m50ms<1b>[0m
test_learner_mars.R........... 0 tests
test_learner_mars.R........... 0 tests
test_learner_mars.R........... 0 tests
test_learner_mars.R........... 0 tests
test_learner_mars.R........... 0 tests
test_learner_mars.R........... 0 tests
test_learner_mars.R........... 5 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.6s<1b>[0m
test_learner_naivebayes.R..... 0 tests
test_learner_naivebayes.R..... 0 tests
test_learner_naivebayes.R..... 0 tests
test_learner_naivebayes.R..... 0 tests
test_learner_naivebayes.R..... 0 tests
test_learner_naivebayes.R..... 0 tests
test_learner_naivebayes.R..... 1 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 2 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 2 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 2 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 2 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 3 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 4 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 5 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 5 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 5 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 6 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 7 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 7 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 7 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 7 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 7 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 7 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 8 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 8 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 8 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 9 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 9 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 9 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 9 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 9 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 9 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 9 tests <1b>[0;32mOK<1b>[0m
test_learner_naivebayes.R..... 10 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m2.2s<1b>[0m
test_learner_sl.R............. 0 tests
test_learner_sl.R............. 0 tests
test_learner_sl.R............. 0 tests
test_learner_sl.R............. 0 tests
test_learner_sl.R............. 5 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m4.7s<1b>[0m
test_learner_stratify.R....... 0 tests
test_learner_stratify.R....... 0 tests
test_learner_stratify.R....... 0 tests
test_learner_stratify.R....... 3 tests <1b>[0;32mOK<1b>[0m
test_learner_stratify.R....... 3 tests <1b>[0;32mOK<1b>[0m
test_learner_stratify.R....... 5 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.2s<1b>[0m
test_learner_svm.R............ 0 tests
test_learner_svm.R............ 0 tests
test_learner_svm.R............ 0 tests
test_learner_svm.R............ 0 tests
test_learner_svm.R............ 0 tests
test_learner_svm.R............ 1 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 2 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 2 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 2 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 2 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 2 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 2 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 2 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 3 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 3 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 3 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 4 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 5 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 5 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 5 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 6 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 7 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 8 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 8 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 9 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 9 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 9 tests <1b>[0;32mOK<1b>[0m
test_learner_svm.R............ 10 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m2.4s<1b>[0m
test_learner_xgboost.R........ 0 tests
test_learner_xgboost.R........ 0 tests
test_learner_xgboost.R........ 0 tests
test_learner_xgboost.R........ 0 tests Error in (function (x, y, objective = NULL, nrounds = 100L, max_depth = NULL, :
argument "y" is missing, with no default
Calls: <Anonymous> ... <Anonymous> -> process.y.margin.and.objective -> NROW
In addition: Warning messages:
1: In throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized), :
Passed unrecognized parameters: verbose. This warning will become an error in a future version.
2: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version.
3: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'eta' has been renamed to 'learning_rate'. This warning will become an error in a future version.
4: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'lambda' has been renamed to 'reg_lambda'. This warning will become an error in a future version.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.6
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘predictionclass.Rmd’ using rmarkdown
Quitting from predictionclass.Rmd:143-145 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! argument "y" is missing, with no default
---
Backtrace:
▆
1. └─lr_xgboost$estimate(data = pbc)
2. └─private$fitfun(data, ...)
3. ├─base::structure(do.call(private$init.estimate, args), design = summary(xx))
4. ├─base::do.call(private$init.estimate, args)
5. └─targeted (local) `<fn>`(...)
6. ├─base::do.call(...)
7. └─xgboost (local) `<fn>`(...)
8. └─xgboost:::process.y.margin.and.objective(...)
9. └─base::NROW(y)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'predictionclass.Rmd' failed with diagnostics:
argument "y" is missing, with no default
--- failed re-building ‘predictionclass.Rmd’
--- re-building ‘riskregression.Rmd’ using rmarkdown
--- finished re-building ‘riskregression.Rmd’
SUMMARY: processing the following file failed:
‘predictionclass.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.6
Check: installed package size
Result: NOTE
installed size is 14.6Mb
sub-directories of 1Mb or more:
libs 12.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64