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pcaGoPromoter 24 annotate 17813 BaseSpaceR 93 rqubic 115 flowPhyto 11 arrayQuality 161 splicegear 29 DynDoc 1349 GEOsubmission 95 hypergraph 198 flowFlowJo 17 cghMCR 106 ChIPXpress 113 snm 187 paircompviz 85 logicFS 117 iterativeBMA 92 CSSP 25 DeconRNASeq 271 dks 74 bioassayR 102 gaia 35 graphite 3145 bioDist 282 msmsTests 287 spotSegmentation 25 BitSeq 40 aCGH 250 REDseq 120 GeneRegionScan 103 prada 43 customProDB 115 iChip 90 ARRmNormalization 92 ExpressionView 34 macat 62 genoset 38 IdMappingRetrieval 29 PLPE 89 GeneMeta 137 flowBeads 92 ShortRead 6379 pathifier 119 spkTools 86 eisa 36 SeqGSEA 253 a4 123 ChIPseqR 118 DirichletMultinomial 4951 codelink 114 OLINgui 95 crlmm 353 AnnotationFuncs 31 TSSi 25 STRINGdb 1266 PING 108 CGHbase 455 RTopper 91 HELP 89 BioSeqClass 32 CORREP 50 multiscan 87 idiogram 99 GOSim 107 birta 27 twilight 141 CNVtools 26 minet 866 SIM 95 TypeInfo 80 biocGraph 278 maanova 46 HEM 88 triform 30 RNASeqPower 177 Repitools 314 spliceR 23 fdrame 90 Category 1827 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biomaRt 23501 RPA 136 factDesign 96 HMMcopy 334 RNAinteract 97 GeneExpressionSignature 113 ABarray 117 CellNOptR 217 a4Preproc 202 affxparser 1656 flowMerge 168 pathRender 99 msmsEDA 300 affyContam 153 metaArray 35 rhdf5 20364 NarrowPeaks 27 affyPara 38 occugene 81 rTRMui 88 ddCt 117 ppiStats 41 xmapbridge 81 plw 33 GraphAT 102 Starr 31 Rtreemix 97 DiffBind 1090 Rcade 36 sscore 46 GEOquery 9773 flowClust 822 PAnnBuilder 29 FunciSNP 28 PROMISE 134 agilp 116 RCASPAR 72 attract 112 methylumi 1604 multtest 12600 nudge 22 PICS 148 GOTHiC 104 ConsensusClusterPlus 3115 pRoloc 287 Heatplus 504 chipseq 662 siggenes 3477 qvalue 18031 AGDEX 95 GSEABase 9038 RamiGO 19 clipper 119 BUS 94 gCMAP 30 copynumber 133 DSS 880 GOstats 1663 maSigPro 289 pint 23 plethy 35 qusage 418 TCC 239 SQUADD 49 MergeMaid 36 VegaMC 86 snapCGH 112 CGHcall 420 RCytoscape 21 MmPalateMiRNA 31 OutlierD 31 goTools 97 cellHTS2 238 SRAdb 487 htSeqTools 29 vsn 5193 CNORfeeder 104 yaqcaffy 32 affyio 8212 a4Core 198 goProfiles 158 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fastLiquidAssociation 86 ABSSeq 144 DupChecker 11 RUVSeq 947 AnnBuilder 6 makePlatformDesign 7 matchprobes 8 arrayMagic 6 SemSim 4 RTools4TB 6 iSPlot 4 Rintact 5 Pbase 18 pRolocGUI 115 mQTL.NMR 15 Polyfit 21 MEIGOR 86 proteoQC 18 RSNPper 9 M3D 15 SemDist 77 ClassifyR 390 hiReadsProcessor 91 rain 114 seqTools 140 derfinderPlot 168 MBAmethyl 60 MethylMix 116 NGScopy 13 SigCheck 82 MGFM 89 MPFE 66 flowcatchR 95 specL 84 BridgeDbR 94 mvGST 14 MAIT 164 ToPASeq 19 saps 4 rgsepd 78 SAGElyzer 6 BeadExplorer 4 gQTLBase 20 ChromoViz 5 QuartPAC 84 AnalysisPageServer 15 cpvSNP 84 CALIB 33 GSEAlm 112 BADER 93 openCyto 673 KEGGSOAP 16 flowWorkspace 1247 flowStats 523 RedeR 355 RpsiXML 41 EBarrays 245 DNAcopy 5318 CNVrd2 94 BiocGenerics 57630 MEDIPS 143 manta 28 rTANDEM 28 baySeq 489 rnaSeqMap 31 chopsticks 121 DNaseR 7 GGtools 42 DASiR 15 BiocInstaller 316 graph 18902 rtracklayer 21268 XVector 49459 GSRI 96 LiquidAssociation 117 logitT 41 IdMappingAnalysis 24 bgx 103 lapmix 84 RGalaxy 30 GeneGA 75 DEGseq 188 cancerclass 222 HTSeqGenie 71 stepwiseCM 22 sSeq 205 tweeDEseq 176 rols 502 CNORode 117 iASeq 75 edgeR 24207 casper 92 maCorrPlot 82 XDE 108 mosaics 190 affylmGUI 131 DrugVsDisease 164 SpacePAC 128 motifRG 28 PGSEA 71 SPEM 111 flowQ 24 SLGI 40 EBSeq 412 BRAIN 145 TargetScore 95 flowFP 196 chroGPS 32 gpls 285 Genominator 36 lumi 1289 GraphAlignment 81 MinimumDistance 120 CRImage 115 oligoClasses 1743 a4Classif 149 panp 115 explorase 27 LPEadj 57 reb 29 SSPA 89 makecdfenv 214 MotIV 44 rGADEM 325 rHVDM 29 prot2D 19 RTN 206 methVisual 27 DEDS 27 CancerMutationAnalysis 32 seqbias 81 Biostrings 48065 gage 867 TEQC 107 cellHTS 27 DART 94 RLMM 83 MantelCorr 75 ScISI 41 MBCB 85 QUALIFIER 30 bigmemoryExtras 26 maigesPack 60 ffpe 97 mcaGUI 30 PREDA 113 flowMatch 98 HiTC 164 MineICA 101 methyAnalysis 35 fmcsR 279 NuPoP 97 pdmclass 29 MiRaGE 95 GENE.E 19 rSFFreader 20 Mulcom 101 OrderedList 103 ROntoTools 231 Clonality 36 flowQB 27 ibh 83 DAVIDQuery 15 plier 142 inSilicoMerging 22 Rsubread 2287 interactiveDisplay 126 oligo 1731 iontree 21 ROC 1142 SomatiCA 16 dualKS 32 charm 37 OSAT 107 Rmagpie 100 inSilicoDb 21 VanillaICE 299 randPack 84 survcomp 1278 epivizr 160 HCsnip 21 parody 133 methylMnM 103 CGHnormaliter 102 genoCN 80 lmdme 86 microRNA 185 AffyTiling 22 GraphPAC 130 RefPlus 59 R453Plus1Toolbox 107 impute 10642 BGmix 23 netresponse 104 Cormotif 98 adSplit 107 AnnotationHub 11818 GeneSelector 29 DTA 107 LMGene 32 ASEB 86 CexoR 95 SANTA 73 SpeCond 103 AllelicImbalance 127 BiocStyle 5873 SMAP 56 PathNet 92 HybridMTest 154 RMassBank 131 affyPLM 1105 cn.farms 98 simpleaffy 106 pathview 4604 splots 236 vtpnet 108 flowPeaks 202 oneChannelGUI 37 virtualArray 11 shinyTANDEM 22 rMAT 28 phenoTest 165 supraHex 513 maPredictDSC 87 cqn 331 dyebias 101 tkWidgets 1354 plateCore 29 trigger 100 biomvRCNS 96 convert 167 gwascat 705 arrayMvout 94 hopach 357 clippda 99 cellGrowth 24 nnNorm 95 SomaticSignatures 200 biosvd 27 Mirsynergy 20 DMRcate 1040 EDDA 26 sapFinder 26 massiR 85 FRGEpistasis 77 metaseqR 29 nondetects 62 npGSEA 89 gaucho 18 COPDSexualDimorphism 4 CompGO 23 ASSIGN 144 Basic4Cseq 96 ChIPseeker 1883 compcodeR 107 MeSHDbi 277 meshr 160 blima 86 flowClean 217 MethylAid 120 MoPS 14 msQC 0 wavClusteR 85 RGSEA 91 externalVector 9 GeneR 12 RdbiPgSQL 9 GeneTraffic 8 Rredland 6 PatientGeneSets 5 cosmiq 166 GeneSpring 8 DOQTL 16 flowDensity 292 ballgown 671 stam 5 STAN 25 keggorth 5 metagene 35 erccdashboard 102 systemPipeR 1211 GOsummaries 52 seqplots 24 focalCall 15 riboSeqR 87 Metab 112 IdeoViz 93 MultiMed 79 pepXMLTab 82 simulatorZ 19 EBSeqHMM 49 TSCAN 706 MSGFgui 21 AIMS 427 GeneTS 5 gespeR 101 CODEX 133 RCyjs 97 FlowRepositoryR 17 mAPKL 25 BrowserVizDemo 6 ENCODExplorer 18 SVM2CRM 13 birte 13 TIN 78 TPP 127 diffHic 135 podkat 86 EMDomics 97 FISHalyseR 76 CAnD 18 seqPattern 792 GENESIS 375 BEclear 95 SIMAT 82 caOmicsV 12 RareVariantVis 88 hierGWAS 82 rCGH 138 ChIPComp 84 erma 124 AnnotationHubData 384 INSPEcT 94 traseR 83 Path2PPI 81 SICtools 69 EnrichedHeatmap 585 OperaMate 6 GEOsearch 6 RCy3 961 Imetagene 17 Prostar 102 DAPAR 160 lfa 305 dupRadar 134 exprExternal 2 goCluster 2 R4RNA 672 globalSeq 77 dcGSA 73 TimerQuant 0 systemPipeRdata 0 Rhtslib 25201 sincell 83 rcellminer 96 cogena 106 NanoStringQCPro 36 CopywriteR 36 soGGi 371 pandaR 144 immunoClust 92 muscle 365 pmm 76 GoogleGenomics 11 seq2pathway 224 HIBAG 140 RTCGAToolbox 549 SummarizedExperiment 39460 chromDraw 81 ggtree 21474 canceR 121 similaRpeak 85 mogsa 235 pwOmics 206 IONiseR 97 rnaseqcomp 88 genotypeeval 25 destiny 684 variancePartition 972 mirIntegrator 92 motifbreakR 235 acde 91 GenomeBase 2 DNABarcodes 181 SWATH2stats 82 biobroom 239 ABAEnrichment 20 SISPA 26 reposTools 2 rfcdmin 3 SNAData 2 applera 2 bim 3 iSNetwork 3 CNPBayes 13 MEAL 106 XBSeq 18 sbgr 3 LedPred 65 GUIDEseq 105 TarSeqQC 22 scde 393 FamAgg 97 normalize450K 73 lpsymphony 1022 kimod 12 gdsfmt 2143 Cardinal 216 BrowserViz 188 LEA 548 LowMACA 24 ComplexHeatmap 15354 gtrellis 152 R3CPET 80 coMET 95 DMRcaller 107 InPAS 92 MethTargetedNGS 74 msa 1690 rGREAT 686 edge 122 regioneR 2015 MeSHSim 5 parglms 73 sidap 0 SELEX 90 sigsquared 79 OmicsMarkeR 15 mtbls2 0 TCGAbiolinks 4111 Oscope 108 ldblock 118 RTCGA 559 LOLA 309 ProteomicsAnnotationHubData 17 Guitar 154 mmgmos 3 CausalR 87 DChIPRep 17 HilbertCurve 109 widgetInvoke 5 miRcomp 81 SNPhood 83 FindMyFriends 20 eudysbiome 74 gcatest 96 GeneBreak 89 multiClust 110 ProtGenerics 11948 RNAprobR 15 bamsignals 1081 RnaSeqSampleSize 117 DeMAND 67 ensembldb 10235 flowVS 126 conumee 183 ENmix 256 netbenchmark 14 RBM 80 GreyListChIP 1008 IVAS 105 RnBeads 308 BubbleTree 100 cytofkit 26 RUVcorr 82 MatrixRider 84 diggit 79 skewr 72 ELMER 197 CNVPanelizer 85 ropls 1280 Prize 14 metaX 3 NanoStringDiff 104 miRLAB 95 PGA 18 OGSA 13 iGC 79 myvariant 103 metagenomeFeatures 17 y2hStat 2 pathVar 23 BBCAnalyzer 84 DiffLogo 96 SEPA 11 RiboProfiling 113 fCI 77 iCheck 78 subSeq 93 synlet 75 iCOBRA 264 consensusSeekeR 121 biomformat 5614 BioQC 141 transcriptR 97 profileScoreDist 74 CrispRVariants 164 GSALightning 69 PanVizGenerator 18 ggcyto 886 splineTCDiffExpr 1 IHW 730 iCARE 167 contiBAIT 54 ExpressionAtlas 262 Mergeomics 89 SMITE 82 dada2 2320 HDF5Array 14627 doppelgangR 234 miRNAmeConverter 84 SwathXtend 87 Linnorm 246 AneuFinder 112 debrowser 194 scran 4898 DRIMSeq 321 pbcmc 8 DEFormats 276 LymphoSeq 93 epivizrServer 158 MultiDataSet 1325 ImmuneSpaceR 57 Director 60 netprioR 68 covRNA 81 FunChIP 57 geneplast 124 MADSEQ 83 qsea 91 ASAFE 73 fgsea 17761 SNPediaR 70 ImpulseDE 10 MODA 81 maftools 2601 RCAS 167 CancerSubtypes 90 eegc 90 LINC 13 SIMLR 263 SPLINTER 83 CancerInSilico 26 MoonlightR 102 GOpro 177 MAST 2176 KEGGlincs 95 yamss 87 flowPloidy 86 fCCAC 81 StarBioTrek 51 psichomics 95 chimeraviz 129 samExploreR 14 JunctionSeq 20 flowAI 579 tofsims 17 EWCE 250 tximport 3458 scater 7398 clustComp 88 cellity 85 MethPed 80 ExperimentHubData 300 PCAN 85 EpiCluster 0 genphen 16 OncoScore 88 CINdex 92 ISoLDE 62 isomiRs 192 Glimma 1168 EGSEA 242 diffloop 34 EGAD 91 epivizrStandalone 84 MMDiff2 78 ccmap 106 DeepBlueR 40 ASpli 124 normr 153 CytoML 459 clusterExperiment 336 recount 417 GRmetrics 108 YAPSA 108 MetaboSignal 143 gCrisprTools 84 philr 190 alpine 37 BiocWorkflowTools 187 synergyfinder 218 TVTB 90 bigmelon 88 M3Drop 702 matter 249 anamiR 12 yarn 147 CCPROMISE 86 proFIA 24 DelayedArray 42151 BUMHMM 103 sparseDOSSA 34 ramwas 151 gcapc 79 coseq 160 cellTree 24 sevenbridges 91 EmpiricalBrownsMethod 153 GenVisR 295 ROTS 234 chromPlot 250 nucleoSim 81 ExperimentHub 7795 garfield 74 Uniquorn 84 psygenet2r 107 sscu 73 QUBIC 162 CountClust 19 EBSEA 74 pcaExplorer 489 BatchQC 128 BgeeDB 158 pqsfinder 123 epivizrData 152 oppar 88 dSimer 11 covEB 76 esetVis 92 MetCirc 102 AMOUNTAIN 117 methylKit 663 rDGIdb 93 CVE 15 LOBSTAHS 121 chromstaR 108 MGFR 91 switchde 79 geneAttribution 85 CellMapper 84 geneXtendeR 132 uSORT 84 BaalChIP 87 statTarget 119 annotatr 499 MutationalPatterns 335 HelloRanges 154 phosphonormalizer 66 MWASTools 184 IWTomics 92 clusterSeq 84 RJMCMCNucleosomes 84 Chicago 117 QuaternaryProd 89 SC3 383 BasicSTARRseq 78 RGraph2js 80 metaCCA 149 RImmPort 64 GenRank 13 MBttest 77 biosigner 117 DNAshapeR 102 bacon 138 CONFESS 99 GMRP 79 recoup 82 MultiAssayExperiment 6241 GenoGAM 21 BadRegionFinder 79 splineTimeR 93 odseq 84 genbankr 82 ClusterSignificance 79 InteractionSet 2042 SpidermiR 72 Harman 192 CHRONOS 84 PureCN 182 bioCancer 98 msPurity 100 Pigengene 142 GEM 77 NetCRG 0 crossmeta 194 sights 83 ctsGE 82 IPO 207 GeneGeneInteR 78 BayesKnockdown 74 SVAPLSseq 12 GAprediction 75 PharmacoGx 301 signeR 98 Anaquin 80 Pi 66 DEsubs 82 readat 13 regsplice 76 meshes 174 PathoStat 167 FitHiC 89 SRGnet 14 crisprseekplus 34 BPRMeth 124 GRridge 25 RnaSeqGeneEdgeRQL 3 scone 131 scDD 154 treeio 20539 karyoploteR 866 MCbiclust 80 discordant 104 TCGAbiolinksGUI 34 sampleClassifier 88 GISPA 44 multiOmicsViz 46 NADfinder 85 RaggedExperiment 908 RIVER 78 GenomicScores 750 epiNEM 171 CATALYST 604 ImpulseDE2 19 IMAS 81 pgca 64 RITAN 95 IsoformSwitchAnalyzeR 284 RTNsurvival 85 scoreInvHap 83 OPWeight 75 GENIE3 1245 HiCcompare 292 rexposome 127 zFPKM 133 cytolib 2753 DEP 541 SPONGE 68 Rbowtie2 317 apeglm 3643 MSstatsQC 103 Onassis 18 TMixClust 98 BASiCS 184 annbuilder 0 scfind 12 DelayedMatrixStats 16127 methimpute 81 JASPAR2018 4 PathwaySplice 12 chromVAR 1182 openPrimeR 177 topdownr 100 scPipe 157 pcxn 60 anota2seq 99 bnbc 231 loci2path 83 TFEA.ChIP 98 MAGeCKFlute 381 mimager 89 funtooNorm 88 POST 13 mapscape 67 DaMiRseq 143 BiocFileCache 26565 cydar 113 BioMedR 4 BLMA 95 wiggleplotr 194 biotmle 83 msgbsR 88 cellbaseR 100 RProtoBufLib 2736 ClusterJudge 80 consensusOV 139 zinbwave 1017 IrisSpatialFeatures 5 M3C 693 DMCHMM 75 Doscheda 86 microbiome 1747 miRmine 48 MIRA 138 progeny 472 slalom 171 mpra 85 flowclust 0 bcSeq 81 MetaNeighbor 113 signet 11 GOfuncR 378 bsgenome 0 shortread 0 biocinstaller 2 ChIPexoQual 92 TCseq 226 splatter 513 REMP 91 EventPointer 91 twoddpcr 79 MIGSA 22 hicrep 12 BioCor 103 motifcounter 80 AnnotationFilter 11210 methylInheritance 89 semisup 73 STROMA4 33 ATACseqQC 394 DASC 2 GA4GHshiny 88 TReNA 3 ndexr 88 motifmatchr 1381 miRBaseConverter 118 methInheritSim 92 Scale4C 86 Rhdf5lib 24064 scmap 245 epivizrChart 84 phenopath 111 RVS 74 BiocSklearn 104 TFHAZ 76 InterMineR 101 panelcn.mops 104 multiMiR 257 ChIPanalyser 88 AUCell 2447 methyvim 15 openPrimeRui 71 rhdf5client 172 ontoProc 296 TnT 50 runibic 93 SeqSQC 197 tenXplore 69 oncomix 74 stageR 195 vulcan 88 iterClust 45 iranges 1 biostrings 1 DMRScan 71 goSTAG 84 geneClassifiers 71 swfdr 89 cellscape 67 timescape 92 Logolas 14 RTNduals 110 Organism.dplyr 440 rqt 65 IntEREst 95 MaxContrastProjection 15 branchpointer 104 GenomicDataCommons 1168 flowTime 87 GA4GHclient 133 banocc 99 netReg 16 pathprint 13 PPInfer 230 ideal 120 basecallQC 90 heatmaps 289 metavizr 21 TSRchitect 18 IntramiRExploreR 75 coexnet 19 mfa 116 beachmat 16150 SingleCellExperiment 15713 SCnorm 130 EpiDISH 692 CEMiTool 163 diffuStats 90 oneSENSE 28 seqcombo 76 TFARM 73 miRsponge 10 amplican 107 trena 30 seqCAT 88 cbaf 87 rhvdm 0 chromswitch 25 restfulSE 181 transcriptogramer 86 affyplm 0 MetaCyto 99 PROPS 77 esATAC 111 ANF 76 ivygapSE 76 gep2pep 76 omicsPrint 86 LineagePulse 37 geoquery 1 biobase 1 mCSEA 127 CHARGE 11 pogos 121 srnadiff 83 enrichplot 18329 MetaGxOvarian 3 dmrseq 230 FELLA 151 phantasus 252 SummarizedBenchmark 48 decontam 1738 singleCellTK 344 perturbatr 12 igvR 133 CAGEfightR 270 sevenC 73 singscore 1542 MSstatsQCgui 68 hipathia 234 InTAD 79 RSeqAn 117 CAMTHC 7 CellTrails 79 Rmmquant 78 slingshot 1505 ipdDb 212 methylGSA 139 appreci8R 112 scruff 90 miRSM 68 LRBaseDbi 142 DEqMS 254 MPRAnalyze 87 plpe 0 sparsenetgls 66 SIMD 71 COCOA 100 HiCBricks 161 ProteoMM 97 RNASeqR 13 artMS 100 compartmap 37 tRNAdbImport 139 annotationdbi 1 rbgl 1 tkwidgets 1 genomicfeatures 1 dnacopy 1 rScudo 74 DelayedDataFrame 84 deco 16 seqlogo 0 scFeatureFilter 72 drawProteins 216 omicRexposome 86 GDCRNATools 305 BiFET 81 CTDquerier 79 gsean 83 DEComplexDisease 17 BEARscc 77 iteremoval 15 CellScore 76 ddPCRclust 98 TTMap 79 scmeth 90 MDTS 70 GeneStructureTools 103 IMMAN 73 adaptest 11 ASICS 112 BioNetStat 86 ORFik 206 OmaDB 294 RandomWalkRestartMH 92 BiocOncoTK 82 edger 1 iasva 85 FastqCleaner 104 sigFeature 255 icetea 77 gwasurvivr 110 sesame 907 slinky 15 mlm4omics 4 NBSplice 18 celaref 95 BUScorrect 72 plotGrouper 67 EnhancedVolcano 4718 XINA 70 MetNet 78 consensus 71 brainImageR 4 nuCpos 71 primirTSS 79 BiocPkgTools 155 NeighborNet 27 AffiXcan 78 cicero 236 breakpointR 83 gpart 23 FoldGO 36 ExCluster 63 QSutils 125 cTRAP 91 TimeSeriesExperiment 16 BDMMAcorrect 34 AssessORF 168 HIREewas 71 Wrench 1703 consensusDE 88 VCFArray 80 gostats 1 category 1 rgraphviz 2 bayseq 1 cntools 1 logitt 1 roma 1 hmdbQuery 94 MACPET 17 powerTCR 346 GARS 82 vidger 136 DEScan2 90 diffcoexp 227 tRNAscanImport 91 GateFinder 83 DEsingle 265 plyranges 1271 seqsetvis 101 ChIC 20 SDAMS 80 TFutils 105 diffcyt 477 Sconify 77 TxRegInfra 13 missRows 76 netSmooth 89 TCGAutils 863 BiocVersion 60584 maser 147 GIGSEA 68 Ularcirc 87 qPLEXanalyzer 91 condcomp 5 ACE 115 OUTRIDER 227 INDEED 60 strandCheckR 77 SCBN 103 REBET 72 multiHiCcompare 186 BiocNeighbors 11046 ERSSA 79 glmSparseNet 244 MSstatsTMT 309 mixOmics 2674 tRNA 162 KinSwingR 74 abseqR 80 bayNorm 104 universalmotif 734 transite 81 PepsNMR 156 decompTumor2Sig 153 scTensor 144 DNABarcodeCompatibility 60 ADAM 222 IsoCorrectoRGUI 75 degseq 1 genomicranges 0 pkgdeptools 0 RGMQL 66 DropletUtils 2608 Trendy 79 RcisTarget 934 omicplotR 85 ChIPSeqSpike 14 kissDE 84 iSEE 515 martini 79 DominoEffect 79 GSEABenchmarkeR 107 Rgin 13 TissueEnrich 272 PowerExplorer 12 mdp 74 rWikiPathways 411 SparseSignatures 81 iCNV 85 SEPIRA 27 SIAMCAT 147 RNAdecay 57 CytoDx 99 GDSArray 247 ccfindR 109 onlineFDR 61 kmknn 0 MetID 79 coRdon 205 tximeta 1091 NormalyzerDE 188 GeneAccord 17 HPAanalyze 147 hierinf 61 countsimQC 324 OMICsPCA 88 IsoCorrectoR 131 FCBF 46 LoomExperiment 638 levi 61 MTseeker 5 PrecisionTrialDrawer 14 snpmatrix 1 topgo 0 PAIRADISE 109 Rhisat2 244 adductomicsR 79 phemd 33 topconfects 195 bigPint 25 SpectralTAD 100 Modstrings 222 PrInCE 79 CoRegFlux 6 qsmooth 201 evaluomeR 80 RcwlPipelines 122 MOFA 9 CHETAH 111 ssrch 99 PAST 70 infercnv 1131 celda 780 VennDetail 272 pipeFrame 178 TPP2D 74 XCIR 9 KnowSeq 79 rsamtools 1 AWFisher 80 Maaslin2 1050 GenomicOZone 94 SigsPack 70 calm 59 debCAM 80 SharedObject 160 pwrEWAS 21 microbiomeDASim 79 methylCC 89 MSstatsSampleSize 20 ssPATHS 66 flowSpy 7 oppti 64 MethCP 13 RNAsense 65 tradeSeq 534 MACSQuantifyR 58 cliqueMS 128 selectKSigs 69 onechannelgui 0 epihet 16 SpatialCPie 93 RCM 88 SMAD 68 alevinQC 104 BiocSingular 12726 Rcwl 123 CNVRanger 137 fishpond 264 qckitfastq 86 miRspongeR 62 batchelor 4006 PoTRA 13 Structstrings 177 proBatch 30 CellMixS 97 ngsReports 93 GNET2 69 survtype 73 TNBC.CMS 48 profileplyr 243 DeMixT 116 DiscoRhythm 88 scRecover 75 netboost 66 scMerge 599 metagene2 91 SubCellBarCode 79 gpuMagic 69 RNAmodR 130 RNAmodR.AlkAnilineSeq 81 TOAST 429 SQLDataFrame 70 scGPS 103 Autotuner 10 AlphaBeta 72 scBFA 82 muscat 540 brendaDb 73 SingleR 4258 gramm4R 7 deltaCaptureC 71 CrossICC 5 idr2d 73 DMCFB 73 CNVfilteR 79 ASpediaFI 14 biscuiteer 91 MMUPHin 155 scPCA 106 scTGIF 254 HCAExplorer 6 MOSim 79 geometadb 0 mitch 76 arrayexpress 0 graper 68 OVESEG 85 cola 142 cytofast 10 GAPGOM 15 Melissa 72 rmelting 79 atSNP 101 BioMM 17 pram 78 CellBench 146 DepecheR 90 hypeR 119 pathwayPCA 93 sitePath 76 AMARETTO 224 sRACIPE 86 RepViz 123 OmicsLonDA 20 SynMut 68 animalcules 226 HCABrowser 8 StructuralVariantAnnotation 245 dcanr 167 mnem 172 enrichTF 61 MMAPPR2 24 MetaVolcanoR 54 SBGNview 224 RNAmodR.ML 76 circRNAprofiler 95 SCANVIS 82 gemini 65 HiLDA 95 proDA 283 VariantExperiment 65 IgGeneUsage 68 fcScan 83 sojourner 17 SEtools 240 ReactomeGSA 243 GmicR 83 MEB 69 ALPS 10 gscreend 67 blacksheepr 86 LinkHD 80 OmnipathR 619 SAIGEgds 111 schex 244 scDblFinder 1563 DEWSeq 82 fcoex 69 methrix 107 flowSpecs 98 brainflowprobes 50 BiocSet 327 MBQN 76 cummerbund 1 ceRNAnetsim 62 geneticsbase 0 arrayqualitymetrics 0 iterativebmasurv 0 chippeakanno 0 gseabase 0 CluMSID 83 PCAtools 1264 divergence 64 doseR 74 scds 540 projectR 127 Xeva 140 mbkmeans 417 BANDITS 134 ADAMgui 116 HumanTranscriptomeCompendium 59 scAlign 19 NBAMSeq 197 lipidr 196 GladiaTOX 67 nanotatoR 95 CopyNumberPlots 177 TreeSummarizedExperiment 1939 RNAmodR.RiboMethSeq 83 ViSEAGO 146 PhyloProfile 92 ncGTW 147 BUSpaRse 219 APAlyzer 93 Qtlizer 71 lionessR 74 BioTIP 89 pulsedSilac 10 PERFect 33 peakPantheR 78 Spaniel 99 signatureSearch 249 GCSscore 20 target 76 waddR 67 netboxr 12 biomart 0 widgettools 1 dearseq 256 SimFFPE 66 BgeeCall 65 DAMEfinder 80 DIAlignR 69 basilisk.utils 3647 ctgGEM 9 scTHI 64 eisaR 133 rhdf5filters 19746 structToolbox 127 RNAAgeCalc 88 combi 105 sparseMatrixStats 15792 peco 68 cytomapper 344 TBSignatureProfiler 88 CARNIVAL 168 dpeak 24 ROSeq 74 rfaRm 67 methylSig 96 GGPA 63 spqn 66 AnVIL 582 metaseqR2 92 weitrix 76 multicrispr 79 MouseFM 211 multiGSEA 159 simplifyEnrichment 893 PeacoQC 259 RadioGx 82 brew 53 RColorBrewer 14 MultiBaC 94 wpm 76 escape 447 transomics2cytoscape 83 SpatialExperiment 3258 hummingbird 63 uncoverappLib 77 QFeatures 2355 UMI4Cats 76 RIPAT 28 Rfastp 158 FScanR 19 SCATE 69 ANCOMBC 1238 facets 0 FilterFFPE 79 metabolomicsWorkbenchR 100 aggregateBioVar 88 tomoda 73 bambu 297 CellaRepertorium 43 GWAS.BAYES 75 densvis 1981 dasper 15 AnVILBilling 67 tidySingleCellExperiment 238 ExperimentSubset 90 AlpsNMR 86 CNVgears 33 mina 60 bnem 80 ttgsea 103 SplicingFactory 61 BumpyMatrix 566 mumosa 89 base 1 grDevices 1 calib 0 PoDCall 63 omicsmarker 0 prostar 0 rlang 492 UTAR 0 simpleSingleCell 0 sigpathway 1 parallel 1 tcltk 1 CSSQ 70 PubScore 9 packFinder 78 BSgenome.Hsapiens.UCSC.hg19 7 frenchFISH 57 tscR 15 vasp 6 Dune 64 tidybulk 325 ROCpAI 60 dittoSeq 1469 ribosomeProfilingQC 101 receptLoss 63 spicyR 201 ribor 72 HIPPO 69 glmGamPoi 4750 distinct 317 scry 255 SingleCellSignalR 268 FRASER 132 CoreGx 387 BiocDockerManager 12 MsCoreUtils 3711 TADCompare 101 DegNorm 75 SPsimSeq 232 Rtpca 82 dichromat 3 magrittr 15 sendmailR 1 scDataviz 99 RegEnrich 124 zellkonverter 1356 Nebulosa 1183 BiocIO 20146 idpr 86 ISAnalytics 73 proActiv 87 ncRNAtools 70 DEXICA 0 pageRank 71 rsemmed 60 vcfR 1 ChromSCape 81 MSPrep 214 MSstatsTMTPTM 5 NewWave 124 famat 77 marr 70 MSEADbi 6 MSstatsConvert 488 biocthis 268 VERSO 66 GSgalgoR 71 NanoMethViz 103 megadepth 147 ADImpute 90 SpatialDecon 217 graphat 1 flowGraph 65 RLassoCox 73 datasets 1 grid 1 PFP 11 stats 1 KEGG.db 1 NPARC 87 CeTF 102 pmp 130 basilisk 3930 MEAT 71 rSWeeP 72 gmoviz 75 ExploreModelMatrix 184 MicrobiotaProcess 523 timeOmics 102 iSEEu 138 MOMA 76 regutools 93 GPA 70 LACE 214 randRotation 62 OpenStats 62 cBioPortalData 442 scuttle 9564 getDEE2 69 padma 74 bitops 68 bluster 5616 GWENA 287 infinityFlow 96 GSEAmining 83 rebook 143 snifter 150 TimiRGeN 48 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