Package	Download_score
generegulation	25
variants	30
annotation	50
liftOver	256
rnaseqGene	148
highthroughputassays	27
proteomics	8
chipseqDB	26
arrays	38
eQTL	8
sequencing	32
simpleSingleCell	39
methylationArrayAnalysis	143
ExpressionNormalizationWorkflow	29
RnaSeqGeneEdgeRQL	51
RNAseq123	113
cytofWorkflow	67
TCGAWorkflow	57
recountWorkflow	26
EGSEA123	26
testproj	0
rnaseqDTU	44
maEndToEnd	68
BiocMetaWorkflow	23
BgeeCall	2
SingscoreAMLMutations	24
csawUsersGuide	23
CAGEWorkflow	22
fluentGenomics	26
BP4RNAseq	20
ExpHunterSuite	22
GeoMxWorkflows	178
formatR	30
BiocManager	317
blob	47
rlang	478
hms	40
openssl	458
MASS	378
restfulr	3
htmltools	347
bookdown	21
evaluate	423
knitr	304
scales	125
devtools	10
pkgload	326
roxygen2	177
tweenr	44
h2o	4
lares	1
rpart.plot	1
pdftools	5
AnnotationDbi	20
genefilter	2
furrr	3
globals	63
AnVIL	0
circlize	49
shape	69
checkmate	248
htmlwidgets	145
plyr	102
fansi	189
codetools	95
rngtools	2
lsa	1
tidyr	271
ggsignif	10
Matrix	436
packrat	22
rsconnect	37
webshot	17
plotly	112
memoise	11
gtable	235
readr	123
RColorBrewer	15
Biobase	9
pkgconfig	2
ipred	23
recipes	49
HandTill2001	1
epiR	3
shinyjs	5
bit	99
bit64	72
doBy	9
units	25
mice	4
batchelor	1
rpart	59
desc	102
highr	162
brew	41
hexbin	14
rematch2	1
tidytree	39
msigdbr	1
writexl	26
GLAD	0
IRanges	8
deSolve	8
dittodb	0
campsismod	0
evd	4
webmockr	0
xaringanthemer	0
fork	1
forecast	8
ggPMX	1
gamlss.dist	4
interp	16
ipaddress	0
jsTreeR	1
klaR	4
lpSolveAPI	1
multcomp	128
paletteer	14
precommit	1
partitions	0
pins	13
prismatic	12
pointblank	1
pmtables	1
randtoolbox	1
Rsmlx	0
R.rsp	0
rclipboard	7
Rdpack	38
rhub	3
s2	34
spatialreg	0
tracee	1
profile	0
spaMM	1
spam	12
reda	0
terra	38
sparklyr	2
statmod	4
vaultr	1
sensitivity	1
sessioninfo	4
remotes	149
formatters	7
assertive.properties	6
nloptr	55
DOSE	2
clusterProfiler	3
BiocParallel	7
Gviz	2
Rgraphviz	1
collections	0
brms	1
Exact	4
dotCall64	14
future.apply	196
esquisse	16
conquer	2
gridtext	3
dtw	1
dtwclust	2
languageserver	1
nonmemica	0
lgr	1
NMdata	1
memisc	1
pagedown	2
PKNCA	0
network	3
pkgdepends	12
padr	1
pkgcache	12
smoothHR	0
riskRegression	1
stringdist	8
wk	34
visNetwork	4
Runuran	1
ucminf	7
shinySelect	0
yardstick	13
tfruns	6
sjPlot	2
raster	15
sfsmisc	4
shinycssloaders	16
BiasedUrn	2
future.callr	3
Cubist	1
doRNG	4
bigreadr	1
fracdiff	5
quarto	8
nlmixr2data	1
servr	7
npde	1
timereg	1
proj4	10
rxode2et	1
rvg	2
rngWELL	1
sp	84
vcr	0
mclogit	0
ks	9
keyring	5
huxtable	4
polspline	3
timechange	206
amgen.okta.client	1
gplots	154
RcppAnnoy	28
spatstat.utils	36
spatstat.geom	41
uwot	111
FNN	168
aplot	44
enrichR	2
shinyalert	17
Markdown	0
GMD	0
RPostgres	86
expm	19
survMisc	1
singleCellTK	0
cxAnalysis	0
BSgenome	3
clusterprofielr	0
curatedMetagenomicData	0
org.Rn.eg.db	1
rtkore	1
SparseM	64
gWidgets2tcltk	0
imcRtools	0
RobustRankAggreg	0
qqconf	1
FactoMineR	18
dbplyr	224
tibble	40
hwriter	3
latticeExtra	8
nlme	229
matrixStats	220
XML	142
DT	163
xfun	455
rmarkdown	394
usethis	168
googlesheets4	24
forcats	11
tzdb	37
GenomeInfoDbData	4
tidyverse	11
GenomeInfoDb	10
estimability	26
future	218
tarchetypes	8
crayon	190
mime	15
sys	116
seqinr	5
idr	0
VennDiagram	2
GlobalOptions	1
GetoptLong	3
rjson	49
viridis	215
cli	381
pkgmaker	3
SnowballC	5
cowplot	105
tidyselect	264
lifecycle	174
lattice	188
httpuv	335
shinyBS	2
shinyWidgets	106
qap	6
viridisLite	57
glue	227
cpp11	259
BiocVersion	17
isoband	33
lubridate	76
xml2	138
clipr	10
zoo	19
biostatUtil	0
lava	44
DRR	0
glmnet	11
PerformanceAnalytics	0
kohonen	1
progress	121
Rd2roxygen	0
crosstalk	107
gdata	22
yaml	302
weights	3
Formula	14
labeling	114
pcaExplorer	0
polyclip	94
vroom	119
RMariaDB	21
aws.signature	1
jose	2
ggtree	3
scatterpie	50
MCPcounter	0
S4Vectors	9
GenomicRanges	5
broom.helpers	18
arm	5
cem	0
bbr	1
binr	0
arrow	13
dfidx	1
clinPK	0
cmdstanr	1
datamods	17
doMC	2
Epi	3
cubature	2
fda	3
flexdashboard	2
dm	1
downlit	105
workflowsets	4
xaringan	1
ggeffects	3
gtsummary	4
ggdist	7
lambdr	0
lotri	0
lavaan	8
metafor	7
nhanesA	0
performance	13
plm	1
partykit	4
pkgdown	137
plumber	20
paws.common	123
parameters	14
scico	1
spData	14
spacetime	3
systemfit	0
targets	12
tidymodels	5
urca	7
timeDate	39
mixOmics	1
credentials	54
systemfonts	292
class	36
shinyjqui	1
car	26
GOSemSim	2
scPipe	0
biomaRt	2
org.Hs.eg.db	3
DelayedMatrixStats	3
Homo.sapiens	0
DBItest	1
chron	3
gghighlight	1
irlba	8
learnr	6
ggtext	4
ggridges	36
DescTools	16
lpSolve	13
mets	1
MatrixModels	66
n1qn1	0
latex2exp	1
protolite	1
paws.application.integration	6
rainbow	2
mnormt	5
officer	18
matrixcalc	1
RSEIS	1
vegawidget	1
statnet.common	2
rsvg	3
multtest	1
qvalue	1
sandwich	18
colourpicker	8
shinytest	3
ssh	3
babelmixr2	1
badger	1
AsioHeaders	5
foghorn	1
lhs	6
maptools	8
mapproj	2
nlmixr2	1
RcppGSL	3
reactable	2
Rook	1
MatchIt	3
pmforest	1
assertr	3
slider	9
shinybusy	20
rxode2parse	1
shinyMobile	1
sensobol	1
rxode2ll	1
yaImpute	2
rxode2random	1
tensorflow	6
whisker	16
ordinal	8
pbapply	19
MutationalPatterns	0
bsplus	1
scidb	0
bbmle	4
metap	3
leiden	16
scattermore	7
sctransform	14
goftest	1
deldir	44
sn	3
VAM	1
textshaping	185
KernSmooth	80
MatrixGenerics	2
lazyeval	1
exactRankTests	1
cytolib	1
variancePartition	1
KEGGREST	8
PhosR	0
rhdf5	2
hdf5r	16
blockcluster	1
irr	1
sjstats	2
SummarizedExperiment	3
GenomicAlignments	3
distr	1
snow	11
DBI	377
generics	21
httr	99
locfit	101
Rcpp	389
RcppEigen	185
RCurl	211
renv	133
sass	322
broom	122
tinytex	404
farver	178
callr	268
processx	291
ps	360
testthat	295
gert	112
dtplyr	16
fontawesome	103
patchwork	91
rvest	175
modelr	19
optparse	37
rapportools	1
readxl	44
shiny	318
igraph	201
GeomxTools	0
ade4	3
segmented	24
ggplot2	365
utf8	167
dichromat	5
NMF	7
iterators	7
dendextend	41
dplyr	165
purrr	86
vegan	40
genefu	0
magrittr	14
vctrs	197
cluster	92
commonmark	259
data.table	405
TSP	10
BSgenome.Hsapiens.UCSC.hg19	1
digest	466
ellipsis	9
reticulate	81
flowWorkspaceData	0
pamr	1
randomForest	26
km.ci	1
caret	14
ModelMetrics	1
dimRed	0
kernlab	44
ddalpha	1
e1071	91
nanostringr	1
mclust	19
filelock	70
pheatmap	1
ggraph	36
xgboost	132
openxlsx	77
nnet	38
expss	2
foreign	60
png	35
gargle	31
Peptides	1
RClickhouse	0
aws.s3	1
promises	270
pingr	19
babelgene	1
tidygraph	44
graphlayouts	64
shadowtext	52
seqpac	24
emayili	2
collapse	1
datawizard	16
clock	20
cobalt	1
drake	5
dockerfiler	1
fields	9
duckdb	4
workflows	4
ymlthis	0
gld	1
gmp	9
insight	20
ggdag	1
lbfgs	0
mlr3	3
nleqslv	1
ParamHelpers	1
quantreg	75
posterior	3
R.cache	2
palmerpenguins	1
rstpm2	1
projpred	1
RApiSerialize	10
qs	14
paws.compute	78
rgl	5
saemix	0
rticles	1
sf	46
TMB	30
tune	5
sm	1
tidyposterior	1
decoupleR	1
limma	17
cachem	315
distributional	7
Brobdingnag	1
dparser	0
gsDesign	1
fixest	1
lintr	103
bayestestR	12
flexclust	3
ggRandomForests	0
minqa	104
mapbayr	0
JuliaCall	0
iml	1
BBmisc	1
mlr	1
mrgmisc	1
osqp	4
party	79
progressr	38
ragg	246
scam	1
scatterplot3d	8
rstan	5
RefManageR	1
templater	1
webfakes	1
DESeq2	6
minpack.lm	4
annotate	2
pcaMethods	1
WGCNA	6
pool	12
config	13
shinythemes	2
cubelyr	0
bigD	11
eha	1
DEoptim	0
juicyjuice	0
HDInterval	1
Matching	3
jpeg	14
nlmixr2lib	1
log4r	1
RcppDE	0
mrgvalprep	1
nlmixr2est	1
slickR	0
NMcalc	0
gap	1
gamlss	4
styler	40
rmutil	1
XLConnect	1
maps	13
msm	7
nanotime	2
tidyvpc	0
survivalROC	1
GPArotation	6
ggbeeswarm	5
modelenv	3
RApiDatetime	1
shinyFiles	3
prettyunits	124
ComplexHeatmap	3
SingleCelLExperiment	0
bdsmatrix	6
reldist	1
Rtsne	28
fitdistrplus	20
ica	4
rex	3
SeuratObject	30
spatstat.core	3
spatstat.sparse	28
ape	49
benchmarkme	1
dbscan	7
magick	26
RcppHNSW	22
pdist	1
spatial	32
robustbase	30
gower	6
inum	3
libcoin	4
Bioconductor	1
BiocIO	1
ggstatsplot	3
DelayedArray	5
castor	2
SBGNview.data	0
scater	2
motifmatchr	2
modeltools	1
rms	4
apcluster	1
fastmap	218
AUCell	1
Rhdf5lib	3
ggfun	71
dittoSeq	1
org.Mm.eg.db	2
DEoptimR	15
pillar	48
R.methodsS3	8
R.oo	75
R.utils	81
RSQLite	197
stringi	384
stringr	164
bslib	377
rprojroot	114
uuid	252
ggforce	47
haven	72
qpdf	4
reprex	80
rmdformats	1
BiocGenerics	14
Biostrings	7
RcppArmadillo	251
rstudioapi	153
emmeans	57
parallelly	213
jsonlite	246
rtracklayer	3
R6	11
curl	448
survival	248
colorspace	144
clue	49
mgcv	246
reshape2	3
withr	316
foreach	7
doParallel	4
bibtex	2
RCircos	0
plotrix	11
ggpubr	13
ggrepel	280
polynom	3
permute	2
DMRcate	1
shinydashboard	3
heatmaply	10
seriation	36
BH	233
fs	242
BSgenome.Hsapiens.UCSC.hg38	3
cmprsk	4
assertthat	2
backports	131
prodlim	33
numDeriv	1
CVST	0
ccaPP	1
quadprog	1
diceR	1
questionr	1
registry	1
pkgbuild	155
Hmisc	46
gtools	39
zip	193
lmtest	4
brio	179
diffobj	3
waldo	186
htmlTable	39
base64enc	1
rversions	10
gh	129
gitcreds	9
BiocFileCache	5
later	165
markdown	96
parsedate	4
yulab.utils	69
treeio	1
edgeR	2
av	1
admiral	2
asciicast	1
blogdown	0
coro	1
covr	10
Cairo	18
csv	0
WeightIt	3
flexsurv	1
flextable	16
gmm	2
gt	44
corrr	0
gam	3
geepack	12
geometry	1
glmmTMB	4
gnm	1
golem	11
hardhat	46
gbm	115
JM	0
infer	5
lobstr	3
mlr3measures	2
lme4	119
mrgsolve	1
modeldata	4
NonCompart	1
optmatch	3
parsnip	7
paradox	2
narray	0
pcaPP	14
randomForestSRC	3
pls	4
RPostgreSQL	4
RBesT	1
rbibutils	34
rrcov	15
RcppCCTZ	1
rsample	12
sortable	6
RItools	2
ranger	19
shiny.router	1
splines2	1
svd	1
transformr	0
robust	10
V8	85
rols	0
svglite	21
proxy	2
carData	3
XVector	2
fastmatch	21
googledrive	21
reactome.db	2
classInt	15
admiral.test	0
ggcorrplot	2
admiraldev	2
crul	107
gee	2
gganimate	1
DHARMa	0
ergm	0
hunspell	37
httr2	163
distill	1
labelled	18
mrgda	1
mlr3misc	2
GA	114
ndjson	0
pracma	16
pak	3
RMySQL	5
NMproject	1
reactlog	1
psych	134
Rwave	1
tables	2
RSiena	0
jomo	0
Rttf2pt1	2
tseries	10
xts	38
tictoc	12
RSpectra	72
Tplyr	2
graph	1
glmmADMB	0
INLA	0
IRkernel	1
webdriver	0
dlstats	0
bs4Dash	10
boot	89
mrgvalidate	1
changepoint	11
magic	1
listenv	62
keras	5
nlmixr2plot	1
Rcsdp	0
RODBC	3
repurrrsive	1
rgeos	7
rxode2	1
rstatix	10
PKI	7
RsSimulx	0
xpose	0
dials	8
nlmixr2extra	1
gettz	0
vioplot	1
mc2d	2
mapdata	1
mvtnorm	113
Seurat	39
ggplotify	13
rvcheck	4
mathjaxr	1
rcmdcheck	3
svMisc	0
spatstat.data	36
TH.data	122
sitmo	2
ClusterR	1
pROC	25
bitops	109
caTools	24
survminer	5
xtable	3
ExploreModelMatrix	0
BiocInstaller	1
oligo	1
MOFA2	1
clusterCrit	1
coin	1
forrester.metadata	0
viridislite	0
morpheus	1
ellipse	17
alphashape3d	0
pryr	1
whereami	0
shiny.react	5
RcppTOML	7
apexcharter	0
DoseFinding	1
orientlib	0
repr	7
SNPlocs.Hsapiens.dbSNP151.GRCh38	0
git2r	23
phyclust	1
DirichletMultinomial	1
tximportData	0
batchtools	1
conflicted	2
simpar	1
GenSA	3
janitor	4
naniar	4
paws	6
ggsci	58
lfe	1
pmxTools	0
sets	1
DESeq	0
condiments	1
ggplot	1
tximeta	1
osmdata	4
ShinyItemAnalysis	4
compositions	3
arules	3
admisc	10
mirt	4
Hoover	1
Swiffer	1
biovizBase	1
influenceR	1
DiagrammeR	3
spatstat.explore	36
diffloop	0
DropletUtils	2
Rsamtools	3
GenomicTools	0
symphony	1
StanHeaders	9
httptest	4
Matrix.utils	1
M3Drop	0
flexmix	1
TCGAbiolinks	0
ALDEx2	1
pscl	3
alkahest.generic	0
rsvd	3
mutoss	2
gprofiler2	3
gridExtra	1
miniUI	1
rAccess	1
lwgeom	4
aws	1
rintrojs	6
RevGadgets	1
RcppDate	1
babelwhale	0
tsne	1
sendmailR	1
gupio	1
lmom	10
dynfeature	0
dynwrap	0
backbone	0
phytools	5
siscreener	0
praise	1
lsei	1
seqLogo	0
visR	1
LDlinkR	0
AnnotationFilter	1
argusDS.gamlss.utils	2
argusDS.trading.performance	1
argusDS.backtesting.engine	2
akima	1
argusDS.shiny.utils	1
SeqArray	0
dreamerr	0
Ckmeans.1d.dp	0
decor	0
fmtr	1
gmailr	2
nonmem2rx	1
PEIP	1
RcppThread	3
RPMG	1
phyloseq	1
ggExtra	6
mlflow	1
sommer	1
LoomExperiment	0
emdbook	1
KEGG.db	1
workflowr	1
cyclocomp	8
snakecase	15
ggnetwork	2
spectacles	0
eulerr	2
pander	3
argusDS.spread.trading.utils	2
imputeLCMD	0
base64	3
argusDS.model.tools	3
rugarch	3
bizdays	2
webshot2	3
rnaseqdtu	0
simplesinglecell	0
tcgaworkflow	0
bp4rnaseq	0
csawusersguide	0
egsea123	0
fluentgenomics	0
gap.datasets	0
rstanarm	1
HardyWeinberg	0
ABAData	1
glca	1
sodium	7
pbdZMQ	2
compareGroups	1
khroma	1
geojson	1
DataOmnio	0
mimosa	0
Biogenerics	1
rworldmap	1
emdist	0
btergm	0
chk	5
drat	1
webp	0
RcppSimdJson	33
IAPWS95	0
entropy	1
anticlust	1
directlabels	1
SIAMCAT	0
RcppProgress	1
ash	0
assertive.types	6
tern	4
EValue	3
rhandsontable	3
tmle	2
teal.modules.clinical	1
designmatch	1
gridSVG	1
setRNG	2
geohashTools	0
RgoogleMaps	5
audio	2
beadarray	0
treemap	1
MetaboReport	0
infotheo	1
pbmcref.SeuratData	1
quantable	1
english	0
FD	0
waffle	1
ArrayExpress	1
zlibbioc	4
qrcode	1
plotROC	1
diptest	3
smooth	0
PEMM	1
wrapr	1
deepregression	0
mlr3pipelines	2
graphql	1
gaston	1
vcfR	1
RNOmni	0
trackViewer	0
argusDS.modeldb	1
BIGL	0
startup	4
argusDS.FZ.utils	1
ijtiff	1
vipor	22
orca	1
proxyC	2
COSG	0
mzR	1
BiocCheck	1
microbenchmark	11
Lahman	1
pec	1
future.batchtools	1
ShortRead	1
ALL	1
glmGamPoi	2
shinyMethyl	0
mlr3tuning	1
Dose	0
crossmatch	1
EnsDb.Hsapiens.v75	0
webchem	1
NNLM	0
logistf	1
qualpalr	0
preAnomalyDetectionCredLife	1
rMVP	2
fabletools	4
kmed	0
iatlas.app	0
BSgenome.Drerio.UCSC.danRer11	0
signal	1
REddyProc	0
celda	0
ggstats	12
lbfgsb3c	1
palr	1
qwraps2	1
fGarch	9
ThresholdROC	0
distances	1
fenr	0
capsidr	1
ggimage	1
ewfutils	0
networkDynamic	0
coda.base	0
gittargets	1
TxDb.Hsapiens.UCSC.hg38.knownGene	1
tradeSeq	1
cba	1
cdip.datastore	1
HTqPCR	0
msdata	0
coxphf	1
C50	1
tximport	1
Rvcg	0
polycor	0
sjlabelled	1
themis	0
ScDblFinder	0
goshawk	1
ATACseqQC	1
SCP	1
moleculaR	0
BrowserViz	0
remaCor	2
neonUtilities	1
inlinedocs	0
nephro	0
Gmisc	0
ECOSolveR	1
argusDS.PossibilityCurves.db.utils	3
ICS	0
MsCoreUtils	1
IlluminaHumanMethylation450kanno.ilmn12.hg19	0
mixsqp	2
sunburstR	0
flowAI	0
scLinear	0
fastshap	1
org.Dr.eg.db	1
ClinicalQc	0
vdbR	0
scviewer	0
SomaVarDB	0
NormalizerDE	0
colortools	0
nat.util	0
this.path	1
BSgenome.Mmul10.SIVmac251	0
did	0
m03modeldevelopment	0
scRNAseq	0
gWidgetstcltk	0
tidyseurat	1
grImport	1
heplots	1
bayesplot	2
bigassertr	1
RcppParallel	18
consort	1
gfonts	1
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Rfast	7
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paws.security.identity	6
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loo	6
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jqr	5
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Luminescence	1
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ebal	0
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data.tree	10
rtweet	4
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TimeProjection	2
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earth	3
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ff	4
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slackr	1
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paws.developer.tools	6
paws.customer.engagement	6
paws.networking	6
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xopen	31
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argusDS.gamlss.forecast	3
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mlpack	1
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argusDS.Studio.APC	1
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microseq	0
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logitnorm	1
shinydashboardPlus	12
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psychometric	4
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ldap	0
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Delaporte	0
seqminer	2
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mlr3learners	2
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MESS	2
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argusDS.possibility.curves.daily	1
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abc	0
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tm	6
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REBayes	0
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amlogger	0
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iq	0
pandoc	0
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missForest	1
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eatTools	2
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report	4
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metR	2
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ore	1
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heatmap.plus	1
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ROSE	1
altair	1
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ProgMan	1
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NORMT3	1
R2GUESS	1
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SC3	1
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VIM	1
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WA43966.shareR.3043877	1
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ftExtra	1
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ProjecTILs	1
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tourr	1
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4.10.1	1
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tensor	1
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flare	1
taylor	1
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VariantWarehouseBMS	1
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assertive.data.uk	1
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AnnoProbe	1
assertive.sets	1
triangle	1
jonasrscripts	1
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hdf5r.Extra	1
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hpgltools	1
treesitter.r	1
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censReg	1
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Bessel	1
adehabitatLT	1
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logitr	1
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arulesViz	1
Rpoppler	1
kit	1
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singleR	1
saeRobust	1
redoc	1