package pdb

BackboneHB

Container for hydrogen bond energy between two residues. This only consider hydrogen bonds between backbone N-H and C=O.

HBParams

Container for static variables for backbone hydrogen bond. Some of them come from STRIDE

MyLine

Pdb

data container for pdb file

PdbAtom

Container for ATOM or HETATM entry of pdb file.

PdbChain

Container of a chain in pdb file

PdbGridParams

Static data container used in generating grid.

PdbModel

Container for a MODEL in pdb file. If there are no MODELs in pdb file, at least one MODEL exists and is used in this program.

PdbResidue

Container of a residue in pdb file. Non-amino acid molecules such as waters, co-factors, lipids are considered as residues.

PdbSecondary

Secondary structure information written in pdb files. Available secondary structure names are listed in SecondaryType.hx.

RamaAngle

Torsion angle

RamaAngles

Container for phi and psi angles

RamaParam

RamaParams

Pramaeters related with Ramachandran plot

ResidueBase

base class for PDB residue (amino acids, water, lipids, ions, ...)

SecondaryType

Static data container defining secondary structure type.

WMHydrogenBond