class pdb.SecondaryType

Available on all platforms

Static data container defining secondary structure type.

Class Fields

static var BRIDGE:Int

id of bridge

static var COIL:Int

id of coils

static var HELIX_3_10:Int

id of 3-10 helices

static var HELIX_ALPHA:Int

id of alpha helices

static var HELIX_PI:Int

id of pi helices

static var NONE:Int

id of non-amino acid residues

static var STRAND:Int

id of strand

static var TURN:Int

id of turn

static function toChar(t:Int):String

Convert given secondary structure type t in integer to a character

  • alpha helix: H
  • 3-10 helix: 3
  • pi helix: P
  • beta strand: E
  • coil: C
  • turn: T
  • bridge: B
  • others: -

static function toString(t:Int):String

Convert given secondary type t in integer to a string.

  • helices: HELIX
  • strand: STRAND
  • coil, bridge: COIL