class pdb.PdbModel
Available on all platforms
Container for a MODEL in pdb file. If there are no MODELs in pdb file, at least one MODEL exists and is used in this program.
Instance Fields
function addAtom(cid:String, resname:String, resid:Int, atom:PdbAtom):Void
add an PdbAtom atom
to this MODEL.
- cid: chain id
- resname: residue name
- resid: residue index
- atom: a PdbAtom
function genSecondaryString():String
returns secondary structure information as a string.
See the same name function in Pdb.hx
for details.
function generateXmlAtomsBonds(minx:Int, miny:Int, minz:Int, maxx:Int, maxy:Int, maxz:Int, atoms:Array<PdbAtom>, indexes:Array<Array<Array<Array<Int>>>>):String
generate ATOMs and BONDs for heteroes.
function initializeSecondary():Void
initialize secondary structure type. COIL for amino acids and NONE for others.