mrcImageAutoRotationCorrelation3D
Usage
Usage: mrcImageAutoRotationCorrelation3D
Options:
[-i[nput] In (NULL ).as(inFile ) ] :Essential :Input: mrc[test]
[-r[ef] Ref (NULL ).as(inFile ) ] :Essential :Input: mrc[ref]
[-o[utput] Out (stdout ).as(outFile ) ] :Optional :Output: Parameter
[-cor Cor (NULL ).as(outFile ) ] :Optional :Output: CorMap
[-fit Fit (stdout ).as(outFile ) ] :Optional :Output: Best Fit
[-E[uler]A[ngle] EulerAngle (YOYS ).as(String ) ] :Optional :Input: EulerAngle
[-Rot1 Rot1Min (0.0 ).as(Real )
Rot1Max (360.0 ).as(Real )
Rot1Delta (5.0 ).as(Real ) ] :Optional :Rot1
[-Rot2 Rot2Min (0.0 ).as(Real )
Rot2Max (180.0 ).as(Real )
Rot2Delta (5.0 ).as(Real ) ] :Optional :Rot2
[-Rot3 Rot3Min (0.0 ).as(Real )
Rot3Max (360.0 ).as(Real )
Rot3Delta (5.0 ).as(Real ) ] :Optional :Rot3
[-Xrange XrangeMin (0 ).as(Real )
XrangeMax (0 ).as(Real ) ] :Optional :Xrange[pixel]: Not set, all space search
[-Yrange YrangeMin (0 ).as(Real )
YrangeMax (0 ).as(Real ) ] :Optional :Yrange[pixel]: Not set, all space search
[-Zrange ZrangeMin (0 ).as(Real )
ZrangeMax (0 ).as(Real ) ] :Optional :Zrange[pixel]: Not set, all space search
[-M[ode] Mode (0 ).as(Integer ) ] :Optional :Mode: Correlation Mode
[-M[ode]R[otation] ModeRotation (0 ).as(Integer ) ] :Optional :Mode: Rotation3D Mode
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
[-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode: InterpolationMode
----- Additional Usage -----
----- -M CorrelationMode -----
0: Normal Correlation FxG*
1: Phase Correlation FxG*/ |FxG*|
2: Phase Correlation FxG*/sqrt(|FxG*|)
3: Normalized Normal Correlation FxG*/|F||G|)
16: (0,0) = 0
Refinement Correlation Map
0: sqrt(Sum |Fi-Gi|^2 / Sum |Gi|^2)
1: Sum |Gi||phaseFi - phaseGi| / Sum |Gi|
2: sqrt(Sum |Gi||phaseFi - phaseGi|^2 / Sum |Gi| )
----- -MR RotationMode -----
0: padding 0
1: padding average
+0: within ellipsoidal area.
+16: within square area.