mrcImageDensityNormalizationByImage

Usage

Usage: mrcImageDensityNormalizationByImage
Options:
    [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :Test: Input
    [-r[ef]              Ref                 (NULL      ).as(inFile              ) ] :Essential :Reference: Input
    [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Essential :NormalizedImage:  Output
    [-O[utput]           OutParam            (stdout    ).as(outFile             ) ] :Optional  :Parameters:       Output
    [-D[ataForNormalizing]UsedData            (stdout    ).as(outFile             ) ] :Optional  :DataList to be used
    [-Cylinder           CCenterX            (20        ).as(Real                ) 
                         CCenterY            (20        ).as(Real                ) 
                         CMinR               (10        ).as(Real                ) 
                         CMaxR               (20        ).as(Real                ) ] :Optional  :Cylinder Region
    [-testBG[Region]     tstBGMin            (-3        ).as(Real                ) 
                         tstBGMax            (3         ).as(Real                ) 
                         tstBGDelta          (0.1       ).as(Real                ) ] :Optional  :SearchRegion
    [-M[ode]             fitMode             (0         ).as(Integer             ) ] :Optional  :DensityFittngMethod: Mode
    [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
    [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
----- Additional Usage -----
----- Mode -----
  1: Sigma!=1.0 
  2: Stdout     
  4: Reversed   
  8: Robust Test
Fitting Mode
  0: Single Line
        ref    /                      
          ^   /   ref = A + B*tst     
          |  /                        
          |------> tst                
  1: Single Line with Background
        ref      /                              
          ^     /   ref = A + B*tst (tst>tstBG) 
 refBG-   | ___/          refBG     (tst tst                         
               |                                
              tstBG