mrcImageDensityNormalizationByImage
Usage
Usage: mrcImageDensityNormalizationByImage
Options:
[-i[nput] In (NULL ).as(inFile ) ] :Essential :Test: Input
[-r[ef] Ref (NULL ).as(inFile ) ] :Essential :Reference: Input
[-o[utput] Out (NULL ).as(outFile ) ] :Essential :NormalizedImage: Output
[-O[utput] OutParam (stdout ).as(outFile ) ] :Optional :Parameters: Output
[-D[ataForNormalizing]UsedData (stdout ).as(outFile ) ] :Optional :DataList to be used
[-Cylinder CCenterX (20 ).as(Real )
CCenterY (20 ).as(Real )
CMinR (10 ).as(Real )
CMaxR (20 ).as(Real ) ] :Optional :Cylinder Region
[-testBG[Region] tstBGMin (-3 ).as(Real )
tstBGMax (3 ).as(Real )
tstBGDelta (0.1 ).as(Real ) ] :Optional :SearchRegion
[-M[ode] fitMode (0 ).as(Integer ) ] :Optional :DensityFittngMethod: Mode
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
[-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
----- Additional Usage -----
----- Mode -----
1: Sigma!=1.0
2: Stdout
4: Reversed
8: Robust Test
Fitting Mode
0: Single Line
ref /
^ / ref = A + B*tst
| /
|------> tst
1: Single Line with Background
ref /
^ / ref = A + B*tst (tst>tstBG)
refBG- | ___/ refBG (tst tst
|
tstBG