See download stats for: Bioconductor annotation packages Bioconductor experiment packages Bioconductor workflow packages

Download stats for Bioconductor software packages

This page was generated on 2024-12-17 08:36:01 -0500 (Tue, 17 Dec 2024).

The number reported next to each package name is the download score, that is, the average number of distinct IPs that “hit” the package each month for the last 12 months (not counting the current month).

Top 75

1	BiocVersion (60249)
2	BiocGenerics (57312)
3	GenomeInfoDb (56357)
4	S4Vectors (56000)
5	zlibbioc (54157)
6	IRanges (53096)
7	XVector (49389)
8	Biobase (48842)
9	Biostrings (48095)
10	GenomicRanges (44523)
11	DelayedArray (41934)
12	BiocParallel (41480)
13	MatrixGenerics (39901)
14	SummarizedExperiment (39455)
15	S4Arrays (39423)
16	SparseArray (39141)
17	KEGGREST (36175)
18	AnnotationDbi (36124)
19	limma (33511)
20	BiocFileCache (26149)
21	Rhtslib (25015)
22	edgeR (24342)
23	GenomicAlignments (24164)
24	Rhdf5lib (23974)
25	Rsamtools (23906)

26	biomaRt (23128)
27	DESeq2 (22052)
28	ggtree (21641)
29	UCSC.utils (21444)
30	rtracklayer (20992)
31	treeio (20711)
32	rhdf5 (20345)
33	BiocIO (20004)
34	GenomicFeatures (19655)
35	rhdf5filters (19654)
36	clusterProfiler (19389)
37	DOSE (19147)
38	graph (18882)
39	GOSemSim (18563)
40	enrichplot (18421)
41	qvalue (18126)
42	fgsea (17895)
43	annotate (17630)
44	BSgenome (16551)
45	beachmat (16154)
46	DelayedMatrixStats (15967)
47	SingleCellExperiment (15803)
48	sparseMatrixStats (15707)
49	ComplexHeatmap (15482)
50	HDF5Array (14701)

51	preprocessCore (14231)
52	BiocSingular (12735)
53	ScaledMatrix (12529)
54	multtest (12454)
55	genefilter (12261)
56	VariantAnnotation (12094)
57	ProtGenerics (11837)
58	AnnotationHub (11418)
59	AnnotationFilter (11154)
60	BiocNeighbors (11075)
61	impute (10655)
62	ensembldb (10074)
63	GEOquery (9758)
64	Rgraphviz (9628)
65	scuttle (9421)
66	RBGL (9415)
67	GSEABase (9040)
68	affyio (8165)
69	affy (8065)
70	ExperimentHub (7766)
71	sva (7530)
72	scater (7294)
73	interactiveDisplayBase (6970)
74	GSVA (6899)
75	BiocBaseUtils (6723)

All software packages

All software package stats in one file: bioc_pkg_stats.tab

All software package download scores in one file: bioc_pkg_scores.tab

See Download stats for Bioconductor software repository (all packages combined)

A

	a4 (129)
	a4Base (188)
	a4Classif (153)
	a4Core (200)
	a4Preproc (201)
	a4Reporting (155)
	aads.rnai (1)
	ABAData (1)
	ABAEnrichment (24)
	abaenrichment (0)
	ABarray (122)
	abc (0)
	abc.data (1)
	abe (0)
	ABHgenotypeR (1)
	abif (1)
	abind (28)
	abseqR (81)
	ABSOLUTE (0)
	ABSSeq (147)
	acde (96)
	ACE (115)
	ace.fma (1)
	acepack (2)
	aCGH (253)
	ACME (126)
	ACTIONet (1)
	ActivePathways (1)
	actuar (1)
	ada (1)
	adabag (1)
	ADaCGH2 (113)
	ADAM (215)
	ADAMgui (117)
	ADAPT (8)
	adaptest (11)
	AdaptGauss (1)
	adbcdrivermanager (1)
	adductData (1)
	adductomicsR (80)
	ade4 (3)
	adegenet (1)
	adegraphics (1)
	adehabitat (1)
	adehabitatLT (1)
	adephylo (1)
	ADGofTest (1)
	ADImpute (91)
	aditools (1)
	adjustedCurves (1)
	admiral (2)
	admiral.test (1)
	admiraldev (2)
	admiralonco (1)
	admiralophtha (1)
	admiralroche (1)
	admisc (11)
	admixtools (0)
	ADMM (0)
	adSplit (110)
	adverSCarial (58)
	AER (1)
	afex (2)
	affio (0)
	AffiXcan (79)
	affxparser (1616)
	affy (8065)
	Affy (1)
	affycomp (135)
	AffyCompatible (52)
	affyContam (157)
	affycoretools (423)
	affydata (4)
	AffyExpress (41)
	affyILM (116)
	affyio (8165)
	affylmGUI (136)
	affyPara (42)
	affypdnn (38)
	affyPLM (1069)
	affyplm (0)
	affyQCReport (45)
	AffyRNADegradation (97)
	AffyTiling (27)
	AGDEX (99)
	aggregateBioVar (89)
	aggregation (0)
	AGHmatrix (0)
	Agi4x44PreProcess (16)
	agilp (117)
	AgiMicroRna (169)
	agricolae (10)
	agridat (1)
	AHMassBank (69)
	AICcmodavg (1)
	aigoraFitMini (1)
	AIMS (416)
	AIPW (0)
	airpart (85)
	airr (1)
	airway (1)
	akima (1)
	alabama (0)
	alabaster (68)
	alabaster.base (2188)
	alabaster.bumpy (108)
	alabaster.files (60)
	alabaster.mae (112)
	alabaster.matrix (2146)
	alabaster.ranges (2066)
	alabaster.sce (745)
	alabaster.schemas (1909)
	alabaster.se (1997)
	alabaster.spatial (110)
	alabaster.string (124)
	alabaster.vcf (116)
	alakazam (1)
	ald (0)
	ALDEx2 (1203)
	aldvmm (1)
	alembic (0)
	alevinQC (105)
	AlgDesign (3)
	alkahest.generic (0)
	ALL (10)
	AllelicImbalance (131)

	alluvial (0)
	almanac (0)
	AlphaBeta (72)
	alphahull (0)
	AlphaMissenseR (52)
	alphashape3d (0)
	alphavantager (1)
	alpine (37)
	ALPS (10)
	AlpsNMR (86)
	alr3 (1)
	alr4 (0)
	alsace (28)
	altair (1)
	altcdfenvs (158)
	amap (1)
	AMARETTO (219)
	ambient (0)
	Amelia (3)
	AmesHousing (0)
	amgen.okta.client (1)
	amgsafetyvis (0)
	amlogger (0)
	AMOUNTAIN (116)
	amplican (108)
	ampliQueso (24)
	AnalysisPageServer (18)
	anamiR (12)
	Anaquin (81)
	ANCOMBC (1229)
	ANCOMBCs (1)
	AneuFinder (113)
	aneufinder (1)
	AneuFinderData (0)
	aneufinderdata (1)
	ANF (80)
	angrycell (1)
	animalcules (231)
	animation (1)
	annaffy (304)
	AnnBuilder (7)
	annbuilder (0)
	anndata (1)
	annmap (134)
	AnnoProbe (1)
	annotate (17630)
	annotation (0)
	AnnotationDbi (36124)
	annotationdbi (1)
	annotationDBI (0)
	AnnotationFilter (11154)
	AnnotationForge (2216)
	AnnotationFuncs (35)
	AnnotationHub (11418)
	annotationhub (1)
	AnnotationHubData (387)
	annotationTools (156)
	annotatr (499)
	anota (120)
	anota2seq (100)
	anRichment (0)
	antaresProcessing (1)
	anticlust (1)
	antiProfiles (93)
	AnVIL (569)
	AnVILAz (21)
	AnVILBase (45)
	AnVILBilling (67)
	AnVILGCP (21)
	AnVILPublish (78)
	AnVILWorkflow (61)
	anytime (6)
	aod (2)
	APAlyzer (95)
	apcluster (1)
	apComplex (107)
	APCtools (1)
	ape (47)
	apeglm (3647)
	apexcharter (0)
	APL (213)
	apLCMS (1)
	aplot (46)
	appgen (1)
	applera (2)
	appreci8R (104)
	aqp (1)
	archive (1)
	ArchR (0)
	argparse (12)
	argparser (1)
	argus.DS.Credentials (3)
	argusDS.apc.utils (3)
	argusDS.backtesting.engine (3)
	argusDS.data (3)
	argusDS.data.engineering (1)
	argusDS.data.preparation (1)
	argusDS.data.preparation2 (4)
	argusDS.data.visualisation (1)
	argusDS.database (2)
	argusDS.DataValidation (1)
	argusDS.DB.manager.utilities (1)
	argusDS.distributions (1)
	argusDS.driver.importance (2)
	argusDS.FCUtilities (1)
	argusDS.FZ.SourceData (1)
	argusDS.FZ.utils (1)
	argusDS.gamboostLSS (1)
	argusDS.gamlss.distributions (1)
	argusDS.gamlss.forecast (3)
	argusDS.gamlss.modelling (3)
	argusDS.gamlss.smoothers (1)
	argusDS.gamlss.testing (3)
	argusDS.gamlss.utils (2)
	argusDS.GlobalSettings (1)
	argusDS.model.testing (1)
	argusDS.model.tools (3)
	argusDS.model.validation (1)
	argusDS.modeldb (1)
	argusDS.possibility.curves.daily (1)
	argusDS.PossibilityCurves.db.utils (3)
	argusDS.PossibilityCurves.utils (1)
	argusDS.S3 (2)
	argusDS.shiny.utils (1)
	argusDS.signal.backtesting (1)
	argusDS.signal.dataprep (2)

	argusDS.signal.generation (1)
	argusDS.smoothers (1)
	argusDS.spread.trading.utils (2)
	argusDS.Studio.APC (1)
	argusDS.Studio.FC (1)
	argusDS.studio.ml (1)
	argusDS.studio.model.utils (1)
	argusDS.Studio.MyStudio (2)
	argusDS.Studio.permissions (3)
	argusDS.Studio.utils (3)
	argusDS.tabulator (3)
	argusDS.trading.optimization (1)
	argusDS.trading.performance (1)
	argusDS.TradingSignals (1)
	argusDS.UI (2)
	argusDS.utilities (1)
	aricode (1)
	arm (4)
	aroma.affymetrix (8)
	aroma.apd (8)
	aroma.core (8)
	aroma.light (2014)
	ArrayExpress (452)
	arrayexpress (0)
	ArrayExpressHTS (36)
	arrayhelpers (1)
	arrayMagic (6)
	arrayMvout (98)
	arrayop (1)
	arrayQCplot (2)
	arrayQuality (167)
	arrayQualityMetrics (482)
	arrayqualitymetrics (0)
	ArrayTools (40)
	ArrayTV (31)
	ARRmData (1)
	ARRmNormalization (94)
	arrow (22)
	arsenal (1)
	artMS (100)
	arules (1)
	ArvadosR (1)
	ASAFE (73)
	ASCAT (0)
	ascii (1)
	asciicast (1)
	ASEB (89)
	ASExtras4 (0)
	AsgntDAMacro (1)
	ASGSCA (89)
	ash (6)
	ashr (1)
	asht (1)
	ASICS (112)
	AsioHeaders (4)
	askpass (162)
	ASMap (1)
	asmn (6)
	asnipe (0)
	ASpediaFI (15)
	ASpli (124)
	asremlPlus (0)
	assert (0)
	assertive (1)
	assertive.base (1)
	assertive.code (1)
	assertive.data (1)
	assertive.data.uk (1)
	assertive.data.us (1)
	assertive.datetimes (1)
	assertive.files (1)
	assertive.matrices (1)
	assertive.models (1)
	assertive.numbers (1)
	assertive.properties (7)
	assertive.reflection (1)
	assertive.sets (1)
	assertive.strings (1)
	assertive.types (7)
	assertr (2)
	assertthat (2)
	AssessORF (167)
	ASSET (137)
	ASSIGN (147)
	assorthead (1179)
	AssotesteR (0)
	astsa (1)
	ASURAT (80)
	async (1)
	ATACCoGAPS (57)
	ATACseqQC (391)
	ATACseqTFEA (80)
	ATE (1)
	atena (123)
	AtlasRDF (16)
	ATR (0)
	atSNP (102)
	attachment (3)
	attempt (1)
	attract (117)
	AUC (1)
	AUCell (2483)
	audio (1)
	audited (1)
	auth0 (1)
	automap (0)
	autometric (1)
	autonomics (70)
	Autotuner (10)
	av (1)
	ava2 (1)
	AWFisher (81)
	aws (2)
	aws.ec2metadata (0)
	aws.s3 (6)
	aws.signature (6)
	awsMethods (1)
	awst (69)
	azcore (1)
	Azimuth (0)
	AzureAuth (1)
	AzureGraph (5)
	AzureRMR (5)
	AzureStor (0)

B

	b64 (1)
	BaalChIP (88)
	babelgene (6)
	babelmixr2 (1)
	babelwhale (0)
	babynames (0)
	BAC (33)
	backports (115)
	bacon (139)
	bacr (0)
	BADER (96)
	badger (0)
	badminton (1)
	BadRegionFinder (80)
	BAGS (101)
	baguette (0)
	bain (1)
	BalancedSampling (0)
	ballgown (642)
	bambu (301)
	bamsignals (1073)
	BANDITS (133)
	bandle (74)
	Banksy (114)
	banocc (102)
	barcodetrackR (72)
	BART (0)
	bartMachine (0)
	bartMachineJARs (0)
	base (1)
	base2grob (1)
	base64 (3)
	base64enc (1)
	base64url (1)
	basecallQC (91)
	basefun (0)
	basemaps (1)
	BaseSpaceR (97)
	Basic4Cseq (100)
	BASiCS (182)
	BASiCStan (103)
	BasicSTARRseq (78)
	basilisk (3770)
	basilisk.utils (3503)
	batchelor (4001)
	BatchJobs (1)
	BatchQC (129)
	batchtools (0)
	battenberg (1)
	BayesFactor (2)
	BayesFM (0)
	BayesianTools (0)
	BayesKnockdown (75)
	bayesm (6)
	bayesmeta (0)
	BayesPeak (33)
	bayespeak (0)
	BayesPen (0)
	bayesplot (11)
	BayesPostEst (1)
	bayesQR (0)
	BayesSpace (264)
	bayestestR (10)
	BayesX (0)
	bayNorm (102)
	baySeq (482)
	bayseq (1)
	BB (1)
	BBCAnalyzer (88)
	BBmisc (1)
	bbmle (14)
	bbotk (1)
	bbr (1)
	bbr.bayes (1)
	bccaEndometrial (1)
	BCEE (0)
	bcellViper (1)
	bcp (1)
	BCRANK (116)
	BCS.OptimizedDesignsForPrism (1)
	BCS.RSB (1)
	bcSeq (81)
	BDgraph (0)
	BDMMAcorrect (32)
	bdsmatrix (14)
	BE (1)
	beachmat (16154)
	beachmat.hdf5 (112)
	beadarray (755)
	beadarraySNP (63)
	BeadDataPackR (620)
	BeadExplorer (5)
	beanplot (1)
	BEARscc (75)
	BEAT (96)
	beaver (1)
	BEclear (98)
	bedr (0)
	beepr (1)
	beer (75)
	beeswarm (1)
	bench (0)
	benchdamic (91)
	benchmarkme (0)
	benchmarkmeData (0)
	benchr (0)
	BentoBox (0)
	berryFunctions (1)
	BERT (43)
	Bessel (0)
	bestglm (1)
	bestNormalize (2)
	betaHMM (41)
	betareg (1)
	betr (32)
	bettermc (1)
	bettr (38)
	BeviMed (0)
	bezier (0)
	BFpack (1)
	BG2 (65)
	bgafun (33)
	BgeeCall (65)
	BgeeDB (160)
	BGLR (1)
	BGmix (27)
	bgs.ggtheme (1)
	bgs.hephaistos (1)
	bgs.hermes (1)
	bgx (105)
	BH (226)
	BHC (87)
	BIApylon (1)
	BiasedUrn (12)
	BIAutils (1)
	bib2df (1)
	bibtex (1)
	BicARE (163)
	biclust (0)

	BIEN (1)
	bife (0)
	BiFET (82)
	biganalytics (0)
	bigassertr (0)
	bigD (6)
	bigdist (0)
	BiGGR (99)
	BIGL (1)
	biglasso (0)
	biglm (4)
	biglmm (0)
	bigmelon (90)
	bigmemory (3)
	bigmemory.sri (3)
	bigmemoryExtras (30)
	bigparallelr (0)
	bigPint (25)
	bigreadr (0)
	bigrquery (14)
	bigsnpr (0)
	bigsparser (1)
	bigstatsr (1)
	bigutils (0)
	bigutilsr (0)
	billboarder (9)
	bim (4)
	BiMax (0)
	binb (1)
	BindingSiteFinder (75)
	bindr (1)
	bindrcpp (1)
	binGroup (0)
	binman (2)
	binom (0)
	binr (0)
	bio3d (5)
	bioassayR (105)
	biobank (1)
	Biobase (48842)
	biobase (1)
	BioBase (1)
	biobroom (240)
	biobtreeR (65)
	bioc::GenomeInfoDbData (0)
	bioCancer (98)
	BioCartaImage (59)
	BiocBaseUtils (6723)
	BiocBook (68)
	BiocBookDemo (3)
	BiocCaseStudies (37)
	BiocCheck (1716)
	biocDatasets (9)
	BiocDockerManager (12)
	BiocFHIR (67)
	BiocFileCache (26149)
	BiocFileCaches (1)
	BiocGenerics (57312)
	BioCGenerics (0)
	biocGraph (275)
	BiocHail (45)
	BiocHubsShiny (96)
	BiocInstaller (288)
	biocinstaller (2)
	Biocinstaller (1)
	BiocInstallerf (0)
	BiocIO (20004)
	BiocManager (324)
	biocmanager (1)
	BiocNeighbors (11075)
	biocneighbors (1)
	BiocOncoTK (78)
	Bioconductor (1)
	bioconductor (0)
	bioconductor-geomxtools (0)
	BioCor (102)
	BiocParallel (41480)
	BiocPkgTools (153)
	biocroxytest (50)
	BiocSet (337)
	BiocSingular (12735)
	BiocSklearn (109)
	BiocStyle (5726)
	biocthis (269)
	BiocVersion (60249)
	biocversion (1)
	Biocversion (1)
	BiocVersionBiocVersion (1)
	biocViews (4367)
	BiocWorkflowTools (187)
	biodb (191)
	biodbChebi (104)
	biodbExpasy (61)
	biodbHmdb (79)
	biodbKegg (77)
	biodbLipidmaps (42)
	biodbMirbase (24)
	biodbNcbi (68)
	biodbNci (75)
	biodbUniprot (67)
	bioDist (281)
	BiodiversityR (1)
	BioGA (19)
	Biogenerics (1)
	BioGenerics (1)
	biom (0)
	biomanager (0)
	BioManager (1)
	biomaRt (23128)
	biomart (1)
	biomartr (1)
	BioMedR (5)
	biomformat (5562)
	BioMM (17)
	biomod2 (1)
	BioMVCClass (100)
	biomvRCNS (102)
	BioNAR (83)
	BioNERO (318)
	BioNet (295)
	BioNetStat (83)
	BioPlex (7)
	BioQC (140)
	BioSeqClass (36)
	biosigner (115)
	biostat3 (1)
	biostatR (0)
	biostatUtil (0)
	Biostring (1)
	Biostrings (48095)
	biostrings (1)
	biosvd (31)
	BioTIP (93)
	biotmle (84)
	biotools (1)
	BioVersion (1)
	biovizBase (5374)
	BiplotML (1)
	BiRewire (158)

	birta (32)
	birte (16)
	biscuiteer (91)
	biscuiteerData (1)
	BiSeq (168)
	bit (91)
	bit64 (54)
	bitops (82)
	BitSeq (44)
	bizdays (2)
	bkbutils (1)
	blacksheepr (88)
	bladderbatch (1)
	BlakerCI (0)
	blastula (1)
	blavaan (1)
	blima (91)
	BLMA (97)
	blme (6)
	blob (60)
	blockcluster (1)
	blockCV (1)
	blockForest (1)
	blockmodeling (1)
	blogdown (0)
	BloodCancerMultiOmics2017 (1)
	BloodGen3Module (163)
	bluster (5633)
	BlythStillCasellaCI (1)
	BMA (1)
	bmcite.SeuratData (1)
	BMisc (0)
	BMix (1)
	bmp (0)
	bmspal (1)
	bnbc (225)
	bnem (82)
	bnlearn (2)
	BOBaFIT (78)
	BOIN (0)
	bold (1)
	bookdown (35)
	Boom (1)
	boomer (1)
	BoomSpikeSlab (1)
	boot (80)
	bootstrap (0)
	borealis (75)
	Boruta (0)
	botor (0)
	box (10)
	box.linters (1)
	BPCells (1)
	bpcp (1)
	BPRMeth (126)
	BPSC (1)
	bRacatus (1)
	BradleyTerry2 (0)
	BRAIN (147)
	brainflowprobes (48)
	brainImageR (4)
	BrainSABER (12)
	BrainStars (30)
	branchpointer (105)
	brave (0)
	breakpointR (83)
	breakpointRdata (1)
	brendaDb (74)
	brew (49)
	BREW3R.r (37)
	BRGenomics (105)
	brglm (0)
	brglm2 (1)
	bricks (0)
	brickster (0)
	bridge (36)
	BridgeDbR (96)
	bridgedist (0)
	bridgesampling (0)
	brio (172)
	brms (1)
	brmsmargins (0)
	broadSeq (22)
	Brobdingnag (1)
	broman (1)
	broom (115)
	broom.helpers (14)
	broom.mixed (1)
	broomExtra (1)
	BrowserViz (180)
	BrowserVizDemo (9)
	bs4Dash (8)
	BSgenome (16551)
	bsgenome (0)
	BSGenome (0)
	BSgenome.Celegans.UCSC.ce2 (1)
	BSgenome.Cfamiliaris.UCSC.canFam3 (5)
	BSgenome.Dmelanogaster.UCSC.dm3 (1)
	BSgenome.Drerio.UCSC.danRer11 (0)
	BSgenome.Ggallus.ENSEMBL.galGal6 (0)
	BSgenome.Hsapiens.1000genomes.hs37d5 (0)
	BSgenome.Hsapiens.NCBI.GRCh38 (1)
	BSgenome.Hsapiens.UCSC.hg19 (7)
	BSgenome.Hsapiens.UCSC.hg38 (11)
	BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major (1)
	BSgenome.Mmul10.SIVmac251 (0)
	BSgenome.Mmulatta.NCBI.mmul10.tmp (0)
	BSgenome.Mmusculus.UCSC.mm10 (6)
	BSgenome.Mmusculus.UCSC.mm39 (0)
	BSgenome.Mmusculus.UCSC.mm9 (0)
	BSgenome.Oaries.ENSEMBL.RambV2 (1)
	BSgenome.Omela.CUSTOM.oenMel1.1 (0)
	BSgenome.Sscrofa.UCSC.susScr3 (1)
	BSgenomeForge (156)
	BSgenomes (0)
	bsicons (3)
	bslib (364)
	bsplus (1)
	bsseq (1538)
	bst (0)
	bsts (1)
	btergm (0)
	BubbleTree (105)
	BuenColors (1)
	BufferedMatrix (132)
	BufferedMatrixMethods (98)
	bugsigdbr (187)
	BUMHMM (104)
	bumphunter (2868)
	BumpyMatrix (557)
	BUS (100)
	BUScorrect (75)
	BUSpaRse (214)
	BUSseq (76)
	butcher (3)
	bvls (0)
	BWStest (2)

C

	C50 (1)
	ca (5)
	CAbiNet (1)
	cache (0)
	cachem (304)
	CaDrA (56)
	CAEN (64)
	CAFE (104)
	CAGEfightR (271)
	cageminer (78)
	CAGEr (248)
	cAIC4 (0)
	Cairo (14)
	CALIB (38)
	calib (0)
	calibrate (1)
	callr (243)
	callthat (0)
	calm (60)
	CAM (1)
	CAMERA (508)
	campsis (0)
	campsismod (0)
	CAMTHC (8)
	CaMutQC (43)
	canceR (120)
	cancerclass (245)
	CancerInSilico (26)
	CancerMutationAnalysis (36)
	CancerSubtypes (85)
	CAnD (21)
	candisc (1)
	canvasXpress (0)
	caOmicsV (16)
	caper (0)
	capsidr (1)
	capushe (1)
	car (32)
	carData (3)
	cardelino (80)
	Cardinal (222)
	CardinalIO (185)
	cards (1)
	cardx (0)
	caret (20)
	caretEnsemble (26)
	CARNIVAL (173)
	carrier (0)
	CARTools (1)
	casebase (0)
	casper (95)
	castor (2)
	castoRedc (0)
	CATALYST (600)
	catboost (1)
	catdata (1)
	Category (1772)
	category (1)
	categoryCompare (108)
	caTools (16)
	CatsCradle (12)
	CATT (0)
	causaldata (0)
	CausalGPS (1)
	CausalR (89)
	cba (1)
	cbaf (89)
	CBDD (1)
	CBEA (130)
	cBioPortalData (430)
	CBNplot (155)
	cbpManager (72)
	CBPS (1)
	ccaPP (1)
	ccdata (9)
	ccdrAlgorithm (1)
	ccDSM (1)
	ccfindR (106)
	ccImpute (70)
	ccmap (104)
	CCPlotR (80)
	CCPROMISE (87)
	ccrepe (135)
	ccube (0)
	cdcfluview (1)
	CDI (61)
	cdip.datastore (1)
	CDMConnector (0)
	CDr (0)
	celaref (93)
	celda (775)
	CellaRepertorium (41)
	CellBarcode (87)
	cellbaseR (99)
	CellBench (145)
	CellChat (1)
	celldex (2)
	cellGrowth (27)
	cellHTS (31)
	cellHTS2 (233)
	CelliD (250)
	cellity (87)
	CellMapper (85)
	cellmigRation (64)
	CellMixS (97)
	CellNOptR (220)
	cellnoptr (1)
	cellranger (1)
	cellscape (67)
	CellScore (76)
	CellTrails (79)
	cellTree (24)
	cellxgene.census (1)
	cellxgenedp (103)
	cem (0)
	CEMiTool (164)
	censcyt (76)
	censored (1)
	censReg (0)
	Cepo (205)
	ceRNAnetsim (63)
	CeTF (102)
	CexoR (100)
	CFAssay (73)
	cfdnakit (71)
	cfDNAPro (94)
	cffr (1)
	cfTools (65)
	cgam (0)
	cgdsr (0)
	CGEN (92)
	CGHbase (447)
	CGHcall (415)
	cghFLasso (0)
	cghMCR (113)
	CGHnormaliter (107)
	CGHregions (121)
	ChAMP (705)
	chAMP (1)
	ChAMPdata (1)
	changepoint (6)
	chanmetab (1)
	CHARGE (12)
	charm (41)
	checkmate (253)
	checkr (0)
	ChemmineOB (333)
	ChemmineR (843)
	chemometrics (1)
	CHETAH (112)
	chevron (1)
	ChIC (20)
	Chicago (117)
	chihaya (119)
	chimera (37)
	chimeraviz (129)
	ChIPanalyser (88)
	ChIPComp (88)
	chipenrich (178)
	ChIPexoQual (94)
	ChIPpeakAnno (1093)
	chippeakanno (0)
	ChIPQC (353)
	ChIPseeker (1879)
	chipseeker (1)
	chipseq (652)
	ChIPseqR (122)
	ChIPSeqSpike (14)
	ChIPsim (115)
	ChIPXpress (108)
	chk (5)
	chopsticks (123)
	CHORD (0)
	choroplethr (1)
	chroGPS (35)
	chromDraw (86)
	ChromHeatMap (151)
	chromoMap (1)
	chromote (20)
	ChromoViz (5)
	chromPlot (242)
	ChromSCape (82)
	chromstaR (105)
	chromstaRData (1)
	chromswitch (25)
	chromVAR (1185)
	chron (3)

	CHRONOS (84)
	cibersort (0)
	cicero (232)
	CIMICE (69)
	CINdex (89)
	cindex (0)
	circlesize (0)
	circlize (46)
	circRNAprofiler (96)
	CircSeqAlignTk (72)
	circular (1)
	cisPath (81)
	CiteFuse (99)
	citril (1)
	Ckmeans.1d.dp (0)
	clarabel (1)
	clariomdhumancdf (1)
	class (37)
	ClassDiscovery (0)
	ClassifyR (387)
	classInt (27)
	cleanrmd (0)
	cleanUpdTSeq (135)
	CleanUpRNAseq (21)
	cleaver (235)
	clevRvis (75)
	cli (371)
	cliapp (1)
	CLIFF (1)
	clinfun (1)
	ClinicalQc (0)
	clinPK (0)
	ClinViz (1)
	clippda (102)
	clipper (122)
	clipr (7)
	cliProfiler (67)
	cliqueMS (123)
	clisymbols (0)
	clock (17)
	Clomial (82)
	Clonality (39)
	clonotypeR (33)
	clst (128)
	clstutils (99)
	clubSandwich (0)
	clue (44)
	CluMSID (82)
	ClustAll (47)
	clustComp (88)
	cluster (88)
	clusterCrit (1)
	clusterExperiment (331)
	clusterexperiment (1)
	ClusterFoldSimilarity (42)
	clusterGeneration (2)
	ClusterJudge (81)
	clustermq (2)
	clusterprofielr (0)
	clusterProfiler (19389)
	clusterprofiler (1)
	ClusterProfiler (1)
	clusterpval (0)
	ClusterR (1)
	clusterRepro (0)
	clusterSeq (87)
	ClusterSignificance (79)
	clusterSim (1)
	clusterStab (113)
	ClusterTools (1)
	clusthaplo (0)
	clustifyr (168)
	ClustIRR (70)
	clustMixType (1)
	ClustOfVar (1)
	clustree (2)
	cluterProfiler (1)
	clv (1)
	clValid (1)
	CMA (155)
	cmapR (424)
	CMAverse (1)
	cmdstanr (1)
	cmocean (1)
	CMplot (0)
	cmprsk (4)
	CmsAnalytics (1)
	cn.farms (103)
	cn.mops (280)
	CNAnorm (100)
	CNAqc (0)
	CNEr (3538)
	CNORdt (99)
	CNORfeeder (108)
	CNORfuzzy (104)
	cNORM (0)
	CNORode (119)
	CNPBayes (16)
	CNTools (171)
	cntools (1)
	CNVfilteR (80)
	CNVgears (33)
	cnvGSA (103)
	CNViz (76)
	CNVMetrics (72)
	CNVPanelizer (89)
	CNVRanger (132)
	CNVrd2 (98)
	cnvrd2 (1)
	CNVtools (30)
	coastr (1)
	cobalt (2)
	cobasmsInstrumentCheck (1)
	cobasmsInstrumentCheckSSW (1)
	cobasmsThemes (1)
	cobindR (33)
	cobs (0)
	CoCiteStats (94)
	COCOA (102)
	coda (21)
	coda.base (1)
	codelink (120)
	CodelistGenerator (0)
	codetools (84)
	CODEX (137)
	coexnet (21)
	CoGAPS (370)
	cogena (109)
	cogeqc (87)
	Cogito (70)
	coGPS (90)
	COHCAP (54)
	CohortCharacteristics (0)
	CohortDiagnostics (1)
	coin (1)
	cola (141)
	collapse (1)
	collections (0)
	CollessLike (0)
	colMeans (1)
	coloc (19)
	colorfulVennPlot (1)
	colorRamps (10)
	colorspace (123)
	colortools (0)
	colourpicker (7)
	colourvalues (1)
	cols4all (1)
	comapr (77)
	ComBatFamQC (1)
	combi (106)
	combinat (1)
	coMET (91)
	coMethDMR (85)
	ComICS (0)
	commentr (0)
	common (1)
	CommonJavaJars (0)
	commonmark (232)
	compahradex (1)
	compareDF (1)
	compareGroups (1)
	compartmap (37)
	COMPASS (112)
	compcodeR (112)
	compEpiTools (99)
	CompGO (26)
	compiler (1)
	ComplexHeatmap (15482)
	complexheatmap (0)
	complexHeatmap (1)
	ComplexUpset (1)
	compositions (3)
	CompoundDb (278)
	CompQuadForm (0)
	ComPrAn (68)
	compSPOT (52)
	CompToxTools (1)
	compute.es (0)
	concaveman (0)
	conclus (9)
	concordancer (1)
	concordexR (88)
	concrete (1)
	condcomp (6)
	condiments (118)
	conditionz (0)

	condMVNorm (0)
	coneproj (1)
	conf.design (0)
	CONFESS (99)
	config (22)
	configr (1)
	confintr (1)
	conflicted (12)
	confoundr (1)
	connectapi (2)
	connectwidgets (0)
	conos (0)
	conquer (2)
	consensus (70)
	ConsensusClusterPlus (3085)
	consensusClustR (1)
	consensusDE (89)
	consensusOV (135)
	consensusSeekeR (120)
	consICA (204)
	consort (1)
	ConsRank (1)
	CONSTANd (68)
	contentid (2)
	contfrac (1)
	contiBAIT (52)
	conumee (187)
	convert (170)
	coop (0)
	CoordinateCleaner (1)
	copa (93)
	COPDSexualDimorphism (4)
	copula (3)
	CopyhelpeR (1)
	copykat (1)
	copynumber (133)
	CopyNumber450k (15)
	CopyNumberPlots (177)
	CopywriteR (39)
	coRanking (1)
	coRdon (206)
	CoRegFlux (6)
	CoRegNet (46)
	CoreGx (381)
	Cormotif (105)
	CorMut (28)
	coRNAi (29)
	corncob (1)
	coro (1)
	corpcor (2)
	corpora (0)
	corral (91)
	correlation (4)
	CORREP (50)
	corrplot (29)
	corrr (0)
	coseq (163)
	COSG (1)
	CoSIA (54)
	cosmiq (169)
	cosmo (10)
	cosmoGUI (10)
	cosmosR (99)
	COSNet (82)
	COTAN (102)
	CountClust (19)
	countrycode (7)
	countsimQC (317)
	covEB (76)
	coveffectsplot (0)
	CoverageView (95)
	coverageview (1)
	covr (9)
	covRNA (81)
	CovSel (0)
	cowplot (99)
	coxme (0)
	coxphf (1)
	CoxPhLb (1)
	coxphw (1)
	cplm (1)
	cpm (0)
	cpp11 (244)
	cpvSNP (89)
	cqn (334)
	cranlogs (0)
	crayon (165)
	crch (0)
	createKEGGdb (1)
	creatr (0)
	credentials (54)
	crew (3)
	crew.cluster (1)
	CRImage (120)
	CRISPR.shinyapp (0)
	CRISPRball (56)
	crisprBase (177)
	crisprBowtie (171)
	crisprBwa (70)
	crisprDesign (157)
	crisprDesignData (1)
	crisprScore (185)
	CRISPRseek (189)
	crisprseekplus (34)
	crisprShiny (42)
	CrispRVariants (157)
	crisprVerse (98)
	crisprViz (136)
	crlmm (347)
	crmPack (0)
	cronR (1)
	crop (0)
	crossdes (0)
	CrossICC (5)
	crossmatch (1)
	crossmeta (184)
	crosstable (1)
	crosstalk (120)
	crrri (0)
	crrry (0)
	crul (99)
	CSAR (111)
	csar (1)
	csaw (596)
	csawBook (4)
	csdR (63)
	csSAM (0)
	CSSP (28)
	CSSQ (70)
	csv (0)
	ctc (297)
	CTdata (62)
	CTDquerier (79)
	CTexploreR (42)
	ctgGEM (10)
	ctmle (0)
	cTRAP (92)
	ctree (0)
	ctsem (1)
	ctsGE (82)
	CTSV (76)
	cubature (2)
	cubelyr (0)
	Cubist (1)
	cummeRbund (255)
	cummerbund (1)
	CuratedAtlasQueryR (79)
	curatedMetagenomicData (0)
	curatedTCGAData (1)
	curl (431)
	customCMPdb (85)
	customProDB (119)
	cutoff (1)
	cvar (0)
	cvAUC (1)
	CVE (15)
	cvms (1)
	CVST (1)
	cvTools (1)
	CVXR (2)
	cxAnalysis (0)
	cyanoFilter (75)
	cycle (102)
	cyclocomp (17)
	cydar (114)
	cyphr (1)
	cypress (39)
	CytoDx (101)
	cytofast (10)
	cytofit (1)
	cytofkit (28)
	CyTOFpower (63)
	cytofQC (79)
	CytoGLMM (114)
	cytoKernel (81)
	cytolib (2731)
	cytomapper (345)
	CytoMDS (40)
	cytoMEM (113)
	CytoML (451)
	CytoPipeline (114)
	CytoPipelineGUI (55)
	CytoTRACE (1)
	CytoTree (16)
	Cytotree (1)
	cytoviewer (114)

D

	D0.db (0)
	D2C (1)
	d3Network (0)
	d3r (0)
	d3treeR (1)
	DAAG (1)
	daapr (1)
	dada2 (2315)
	dae (0)
	daff (1)
	dagitty (1)
	dagLogo (114)
	DAISIE (1)
	DALEX (1)
	DALEX2 (1)
	daMA (92)
	DAMEfinder (80)
	DaMiRseq (142)
	Damsel (30)
	DAPAR (161)
	dapr (1)
	dar (41)
	DARAtools (1)
	DART (99)
	DASC (2)
	DASiR (18)
	dasnormalize.iomel (0)
	dasper (14)
	dastools (1)
	data.table (363)
	data.tree (12)
	DatabaseConnector (1)
	datacutr (1)
	DataEditR (1)
	DataExplorer (1)
	DataFerry (1)
	dataMaid (1)
	datamods (16)
	DataOmnio (0)
	datapasta (1)
	datapipeline (0)
	datasets (1)
	DataVisualizations (1)
	datawizard (14)
	date (1)
	DAVIDQuery (19)
	dbaccess (1)
	dbarts (3)
	DBChIP (37)
	DBI (369)
	DBItest (0)
	dblplyr (1)
	dblypr (1)
	dbplyr (208)
	dbscan (6)
	dbx (8)
	dcanr (167)
	dcat (1)
	DCATS (81)
	DCchoice (0)
	dcdatr (0)
	dce (88)
	dcGSA (74)
	DChIPRep (21)
	ddalpha (1)
	DDCompanion (1)
	ddCt (123)
	ddgraph (26)
	ddpcr (1)
	ddPCRclust (99)
	DDRTree (1)
	deal (0)
	dearseq (251)
	debCAM (79)
	debrowser (188)
	debugme (1)
	DECENT (1)
	DECIPHER (2915)
	decipher (1)
	DecisionCurve (1)
	deco (17)
	DEComplexDisease (18)
	decompTumor2Sig (153)
	deconfectHelpers (1)
	DeconRNASeq (267)
	deconstructSigs (1)
	decontam (1730)
	decontX (200)
	deconvR (85)
	decor (0)
	decoupleR (1173)
	decoupler (1)
	DEDS (31)
	Deducer (0)
	deEndometrial (1)
	DeepBlueR (37)
	DeepPINCS (101)
	deepregression (1)
	deepSNV (196)
	DeepTarget (21)
	deeptime (1)
	DEFormats (273)
	DegCre (38)
	DegNorm (75)
	DEGraph (93)
	degraph (1)
	degreenet (1)
	DEGreport (626)
	DEGseq (191)
	degseq (1)
	Delaporte (1)
	DelayedArray (41934)
	DelayedDataFrame (85)
	DelayedMatrixStats (15967)
	DelayedRandomArray (107)
	DelayedTensor (71)
	deldir (48)
	DELocal (90)
	deltaCaptureC (72)
	deltaGseg (85)
	DeMAND (69)

	DeMixT (119)
	demuxmix (273)
	demuxSNP (62)
	dendextend (32)
	dendroextras (1)
	DendSer (0)
	dendsort (0)
	densEstBayes (8)
	densityClust (1)
	densvis (1774)
	DEoptim (0)
	DEoptimR (23)
	DEP (549)
	dep (1)
	DepecheR (89)
	DepInfeR (63)
	depmap (1)
	DeProViR (36)
	DEqMS (253)
	derfinder (585)
	derfinderData (1)
	derfinderHelper (584)
	derfinderPlot (171)
	Deriv (7)
	desc (108)
	DEScan2 (91)
	descr (1)
	descsuppR (0)
	DescTools (17)
	DESeq (178)
	deseq (1)
	DESEQ (1)
	DESeq2 (22052)
	deseq2 (1)
	designmatch (1)
	DEsingle (266)
	deSolve (11)
	DESpace (78)
	destiny (663)
	DEsubs (84)
	devEMF (1)
	devtools (20)
	devutils (1)
	DEWSeq (84)
	DEXICA (0)
	DExMA (79)
	DEXSeq (1500)
	dexus (36)
	dfidx (0)
	dfoptim (1)
	DFP (102)
	DFplyr (6)
	DHARMa (0)
	diagram (1)
	DiagrammeR (3)
	DiagrammeRsvg (0)
	DIAlignR (66)
	dials (16)
	DiceDesign (14)
	DiceKriging (0)
	diceR (1)
	dichromat (3)
	did (0)
	DiffBind (1081)
	diffcoexp (221)
	diffcyt (479)
	diffdf (1)
	DifferentialRegulation (75)
	diffGeneAnalysis (89)
	diffHic (133)
	DiffLogo (99)
	diffloop (33)
	diffloopdata (1)
	diffobj (3)
	diffuStats (89)
	diffUTR (73)
	diffviewer (1)
	digest (429)
	diggit (83)
	digitalDLSorteR (1)
	dimRed (1)
	Dino (75)
	dinoR (38)
	diptest (3)
	dir.expiry (3548)
	directlabels (4)
	Director (61)
	DirichletMultinomial (4937)
	discordant (106)
	DiscoRhythm (88)
	discretecdAlgorithm (1)
	DiscriMiner (0)
	disk.frame (0)
	dismo (1)
	distances (1)
	distill (1)
	distillery (0)
	distinct (309)
	distory (1)
	distr (1)
	distr6 (1)
	distrEx (0)
	distributional (17)
	DistributionUtils (2)
	distro (0)
	dittodb (0)
	dittoSeq (1451)
	DiurnalMRI (1)
	divergence (65)
	diveRsity (0)
	dixon (0)
	djvdj (0)
	dks (77)
	dlm (1)
	dlookr (1)
	dlstats (0)
	dm (1)
	DMCFB (75)
	DMCHMM (76)
	DMRcaller (111)
	DMRcate (1076)

	DMRcatedata (1)
	DMRforPairs (38)
	DMRScan (71)
	dmrseq (232)
	DMwR (1)
	DNABarcodeCompatibility (60)
	DNABarcodes (183)
	DNAcopy (5286)
	dnacopy (1)
	DNAfusion (69)
	DNaseR (7)
	DNAshapeR (104)
	dndscv (0)
	dnet (1)
	do (1)
	DO.db (8)
	doBy (7)
	dockerfiler (1)
	docopt (6)
	DoE.base (1)
	DoEstRare (0)
	doFuture (1)
	domainsignatures (29)
	doMC (2)
	DominoEffect (79)
	dominoSignal (15)
	doMPI (1)
	doParallel (4)
	doppelgangR (226)
	DOQTL (19)
	doRedis (0)
	doRNG (3)
	dorothea (1)
	Doscheda (87)
	DOSE (19147)
	Dose (0)
	dose (1)
	DoseFinding (1)
	doseR (74)
	doSNOW (1)
	dotCall64 (9)
	dotplot (1)
	dotwhisker (1)
	DoubleML (1)
	DoubletFinder (1)
	doubletrouble (84)
	downlit (106)
	downloader (1)
	downloadthis (1)
	dowser (1)
	dparser (1)
	dpbuild (1)
	DPClust (0)
	dpclust3p (0)
	dpdeploy (1)
	dpeak (24)
	dpi (1)
	dplyr (180)
	dplyr1 (1)
	dplyr12 (1)
	dplyrb (0)
	dqrng (55)
	dr (0)
	drake (8)
	drat (1)
	drawProteins (214)
	drc (1)
	drda (1)
	DRDID (0)
	dream (0)
	dreamerr (0)
	dreamlet (90)
	drgee (0)
	DRIMSeq (318)
	DriverNet (81)
	DropletUtils (2548)
	drosophila2probe (1)
	DRR (1)
	drugfindR (1)
	drugTargetInteractions (77)
	DrugVsDisease (168)
	ds4psy (1)
	dsb (1)
	dSimer (11)
	dslabs (1)
	dsr (3)
	DSS (866)
	dStruct (65)
	DT (167)
	DTA (109)
	dtangle (0)
	dtplyr (27)
	DTRreg (0)
	dttr2 (0)
	dtw (1)
	dtwclust (2)
	dualKS (36)
	duckdb (6)
	duct.tape (1)
	dummies (0)
	Dune (64)
	dunlin (1)
	dunn.test (1)
	DupChecker (14)
	DuplexDiscovereR (6)
	dupRadar (139)
	dv.teal (1)
	dwrPlus (1)
	dyebias (108)
	dygraphs (0)
	dynamicTreeCut (1)
	dynamite (1)
	DynDoc (1351)
	dynfeature (0)
	dynlm (0)
	dynplot (0)
	dynpred (0)
	dynsbm (1)
	DynTxRegime (1)
	dynwrap (0)

E

	e1071 (89)
	earth (3)
	easier (148)
	EasyABC (0)
	easyalluvial (1)
	EasyCellType (81)
	easyENTIM (1)
	easylift (64)
	easypackages (1)
	easypar (0)
	EasyqpcR (32)
	easyreporting (74)
	easyRNASeq (224)
	easystats (3)
	eatGADS (1)
	eatTools (1)
	ebal (0)
	EBarrays (243)
	EBcoexpress (110)
	EBImage (2737)
	ebimage (1)
	EBSEA (75)
	EBSeq (415)
	EBSeqHMM (49)
	Ecdat (0)
	Ecfun (0)
	echarts4r (5)
	ecodist (1)
	ecolitk (110)
	ECOSolveR (1)
	ecospat (1)
	Ecume (1)
	EDASeq (1820)
	edd (15)
	EDDA (30)
	edge (125)
	edgeR (24342)
	edger (1)
	EDIRquery (57)
	eds (409)
	eegc (83)
	EffectLiteR (1)
	effects (0)
	effectsize (8)
	EGAD (91)
	egg (6)
	egor (1)
	EGSEA (247)
	EGSEAdata (1)
	eha (1)
	eiR (95)
	eisa (40)
	eisaR (133)
	elasticsearchr (1)
	ELBOW (28)
	ellipse (17)
	ellipsis (9)
	elliptic (1)
	ELMER (200)
	ELMER.data (1)
	EMAtools (1)
	emayili (2)
	embed (1)
	EMD (1)
	emdbook (11)
	emdist (0)
	EMDomics (102)
	emmeans (69)
	EMMREML (1)
	emoa (1)

	EmpiricalBrownsMethod (153)
	emstreeR (1)
	emulator (0)
	EMVS (1)
	enc (0)
	encode (0)
	ENCODExplorer (22)
	encryptr (0)
	energy (1)
	engitix.singlecell.db (1)
	engitomixmk2 (0)
	english (0)
	EnhancedVolcano (4803)
	enhancedvolcano (0)
	enhancerHomologSearch (73)
	EnMCB (77)
	ENmix (261)
	enmSdmX (1)
	ENMTools (1)
	EnrichDO (10)
	EnrichedHeatmap (579)
	EnrichmentBrowser (631)
	enrichplot (18421)
	enrichPlot (1)
	enrichR (1)
	enrichTF (57)
	enrichViewNet (72)
	enrichwith (0)
	EnsDb.Hsapiens.v75 (6)
	EnsDb.Hsapiens.v79 (6)
	EnsDb.Hsapiens.v86 (8)
	EnsDb.Mmusculus.v79 (1)
	ensembldb (10074)
	ensemblVEP (161)
	ensurer (1)
	entropy (1)
	envalysis (1)
	ENVISIONQuery (30)
	EnvStats (2)
	Epi (3)
	epialleleR (77)
	EpiCluster (0)
	EpiCompare (43)
	epidecodeR (68)
	EpiDISH (703)
	epigenomix (96)
	epigraHMM (80)
	epihet (16)
	EpiMix (71)
	epimutacions (77)
	epiNEM (170)
	EpiNow2 (3)
	EpipwR (6)
	epiR (2)
	epiregulon (43)
	epiregulon.extra (42)
	epistack (68)
	epistasisGA (63)
	EpiStats (0)
	epitools (0)
	EpiTxDb (100)
	epivizr (166)
	epivizrChart (85)
	epivizrData (151)
	epivizrServer (156)
	epivizrStandalone (84)
	epuRate (1)
	eq5d (1)
	equatags (0)
	equate (0)

	equivalence (0)
	erccdashboard (106)
	ergm (1)
	ergm.count (0)
	ergm.multi (1)
	erify (0)
	erma (137)
	errorlocate (1)
	ERSSA (81)
	esATAC (110)
	escape (446)
	escheR (130)
	esetVis (93)
	esquisse (14)
	estimability (29)
	estimate (1)
	estimatr (0)
	estmeansd (0)
	etm (1)
	eudysbiome (78)
	eulerr (1)
	europepmc (1)
	evaluate (414)
	EValue (3)
	evaluomeR (80)
	evd (4)
	EventPointer (93)
	eventPrediction (1)
	eventTrack (0)
	EVMS (1)
	EWCE (250)
	ewfutils (1)
	Exact (2)
	exact2x2 (1)
	exactci (1)
	exactextractr (0)
	exactRankTests (1)
	excelR (1)
	ExCluster (63)
	ExiMiR (97)
	exomeCopy (283)
	ExomeDepth (1)
	exomePeak (37)
	exomePeak2 (99)
	exonfindR (0)
	exonmap (10)
	ExperimentHub (7766)
	ExperimentHubData (296)
	ExperimentSubset (90)
	expint (0)
	explorase (31)
	explore (1)
	ExploreModelMatrix (181)
	ExplorOMICS (1)
	expm (21)
	ExpressionAtlas (255)
	ExpressionView (38)
	exprExternal (2)
	expsmooth (0)
	expss (2)
	externalVector (10)
	extraChIPs (104)
	extraDistr (8)
	extrafont (1)
	extrafontdb (1)
	extraInserts (0)
	extraoperators (1)
	extraTrees (0)
	extRemes (0)

F

	faahKO (1)
	fabia (210)
	fable (1)
	fabletools (4)
	facets (0)
	facopy (14)
	factDesign (101)
	factoextra (6)
	FactoInvestigate (0)
	FactoMineR (18)
	Factoshiny (0)
	factR (72)
	faers (54)
	fail (0)
	fairhub.metadata (1)
	fairhub.r.client (1)
	fakepackage (1)
	FamAgg (93)
	famat (78)
	fame (1)
	fANCOVA (3)
	fansi (204)
	faraway (0)
	farms (59)
	farver (150)
	fastcluster (5)
	fastDummies (19)
	fasterize (1)
	fastGHQuad (0)
	fastICA (37)
	fastLiquidAssociation (90)
	fastmap (208)
	fastmatch (17)
	fastmatrix (1)
	FastqCleaner (104)
	fastqcr (1)
	fastreeR (91)
	fastseg (783)
	fastshap (1)
	fasttime (1)
	fastverse (0)
	faux (1)
	fauxpas (0)
	fBasics (3)
	fbat (7)
	FCBF (44)
	fCCAC (83)
	fCI (80)
	fcoex (62)
	fcScan (84)
	FD (0)
	fda (10)
	FDb.InfiniumMethylation.hg19 (5)
	fdrame (94)
	fdrtool (6)
	fds (6)
	FEAST (135)
	feasts (3)
	feather (0)
	FeatSeekR (58)
	feature (6)
	FedData (0)
	fedup (68)
	feisr (0)
	FELLA (149)
	FEM (31)
	fenr (62)
	fExtremes (8)
	ff (4)
	ffbase (0)
	FField (0)
	ffpe (101)
	fftw (1)
	fftwtools (1)
	fGarch (7)
	fgga (68)
	FGNet (143)
	fgsea (17895)
	fhcmacro (1)
	fido (1)

	fields (5)
	filehash (1)
	filelock (74)
	filesstrings (1)
	FilterFFPE (79)
	finalfit (1)
	findIPs (42)
	FindIT2 (74)
	FindMyFriends (23)
	findpython (11)
	fineimp (1)
	finetune (1)
	fingerprint (1)
	FISHalyseR (80)
	fishHook (0)
	fishMod (0)
	fishpond (255)
	fit.models (0)
	fitdistrplus (24)
	FitHiC (92)
	fixest (1)
	flagme (90)
	flair (0)
	FLAMES (99)
	flashClust (1)
	flexclust (3)
	flexdashboard (2)
	flexmix (1)
	flexsurv (1)
	flexsurvcure (0)
	flextable (25)
	flipflop (25)
	float (2)
	flock (0)
	flowAI (575)
	flowBeads (97)
	flowBin (100)
	flowcatchR (99)
	flowCHIC (95)
	flowCL (32)
	flowClean (217)
	flowClust (810)
	flowclust (0)
	flowCore (2884)
	FlowCore (0)
	flowcore (0)
	flowCut (130)
	flowCyBar (83)
	flowDensity (294)
	flower (1)
	flowFit (28)
	flowFlowJo (18)
	flowFP (201)
	flowGate (94)
	flowGraph (65)
	flowMap (53)
	flowMatch (102)
	flowMeans (186)
	flowMerge (172)
	flowPeaks (207)
	flowPhyto (12)
	flowPloidy (86)
	flowPlots (85)
	flowQ (29)
	flowQB (31)
	FlowRepositoryR (21)
	FlowSOM (1106)
	FlowSorted.Blood.450k (1)
	FlowSorted.Blood.EPIC (9)
	FlowSorted.CordBloodCombined.450k (9)
	flowSpecs (100)
	flowSpy (7)
	flowStats (515)
	flowTime (89)
	flowTrans (124)
	flowType (30)
	flowUtils (58)
	flowViz (1038)
	flowVS (129)
	flowWorkspace (1238)

	flowworkspace (1)
	flowWorkspaceData (1)
	flux (1)
	fma (0)
	fmcsR (278)
	FME (0)
	fmrs (141)
	fmsb (1)
	FMStable (0)
	fmtr (2)
	FNN (158)
	fobitools (78)
	focalCall (19)
	foghorn (1)
	FoldGO (35)
	fontawesome (89)
	fontBitstreamVera (1)
	fontcm (0)
	fontLiberation (1)
	fontquiver (1)
	forcats (19)
	foreach (5)
	forecast (9)
	foreign (65)
	forestmodel (1)
	forestplot (1)
	forestploter (1)
	fork (1)
	formatR (27)
	formattable (1)
	formatters (6)
	Formula (14)
	formula.tools (1)
	forrester.metadata (0)
	fortunes (0)
	fossil (0)
	FourCSeq (23)
	fpc (76)
	fpp (0)
	fpp3 (1)
	fracdiff (5)
	FragPipeAnalystR (1)
	frailtypack (3)
	FRASER (132)
	freetypeharfbuzz (1)
	frenchFISH (58)
	fresh (11)
	FrF2 (1)
	FRGEpistasis (81)
	frictionless (1)
	frma (179)
	frmaTools (113)
	fs (212)
	FSA (1)
	FScanR (18)
	FSelectorRcpp (1)
	fst (1)
	fstcore (1)
	ftExtra (1)
	fTrading (0)
	FunChIP (51)
	FunciSNP (31)
	FunciSNP.data (1)
	fungible (1)
	fUnitRoots (2)
	funkyheatmap (1)
	funOmics (21)
	funtooNorm (90)
	furniture (1)
	furrr (13)
	FuseSOM (74)
	futile.logger (1)
	futile.options (1)
	future (206)
	future.apply (185)
	future.batchtools (1)
	future.callr (2)
	fuzzyjoin (0)
	fuzzySim (1)
	fwb (0)

G

	g3viz (1)
	G4SNVHunter (0)
	GA (109)
	GA4GHclient (133)
	ga4ghclient (0)
	GA4GHshiny (89)
	gada (0)
	gaga (143)
	gage (854)
	gageData (1)
	gaggle (58)
	gaia (39)
	gam (13)
	GAMBLR.results (1)
	GAMBoost (1)
	gamboostLSS (2)
	gameofthrones (1)
	gamlss (3)
	gamlss.add (2)
	gamlss.data (2)
	gamlss.dist (3)
	gamlss.tr (0)
	gamm4 (0)
	gap (1)
	gap.datasets (0)
	gapfill (0)
	GAPGOM (15)
	gapminder (0)
	GAprediction (75)
	garfield (74)
	gargle (43)
	GARS (83)
	gaston (1)
	GastrographPackage (1)
	GateFinder (84)
	gatom (66)
	gaucho (22)
	gausscov (1)
	gbm (111)
	gbRd (1)
	GBScleanR (91)
	gbutils (0)
	gcapc (79)
	gcatest (100)
	gclus (1)
	gCMAP (34)
	gCMAPWeb (27)
	gCrisprTools (83)
	gcrma (1276)
	GCS (1)
	GCSConnection (8)
	GCSFilesystem (8)
	GCSscore (20)
	gdata (27)
	GDCRNATools (285)
	gdistance (0)
	gdm (0)
	gDNAx (77)
	gDR (57)
	gDRcore (102)
	gDRimport (105)
	gDRstyle (94)
	gDRutils (123)
	GDSArray (247)
	gdsfmt (2120)
	gdsx (1)
	gdtools (118)
	GeDi (52)
	gee (1)
	geeasy (2)
	geecc (26)
	geepack (11)
	geigen (0)
	geiger (0)
	GEM (77)
	gemini (65)
	gemma.R (83)
	gemtc (0)
	GenABEL (1)
	GenABEL.data (1)
	genArise (88)
	genbankr (75)
	GENE.E (22)
	gene2pathway (12)
	GeneAccord (16)
	GeneAnswers (46)
	geneAttribution (86)
	GeneBreak (93)
	geneClassifiers (71)
	GeneExpressionSignature (116)
	genefilter (12261)
	genefu (413)
	GeneGA (77)
	GeneGeneInteR (78)
	GeneGroupAnalysis (9)
	genekitr (1)
	geneLenDataBase (10)
	GeneMeta (138)
	genemeta (1)
	GeneNet (0)
	GeneNetworkBuilder (109)
	GeneNMF (1)
	GeneOverlap (546)
	geneoverlap (1)
	geneplast (120)
	geneplotter (5433)
	GeneR (12)
	GeneralizedHyperbolic (2)
	geneRecommender (92)
	GeneRegionScan (108)
	GeneRfold (6)
	generics (18)
	geneRxCluster (96)
	GeneSelectMMD (140)
	GeneSelector (33)
	GENESIS (372)
	genesis (0)
	GeneSpring (8)
	GeneStructureTools (102)
	geNetClassifier (176)
	genetclassifier (1)
	genetics (1)
	GeneticsBase (8)
	geneticsbase (0)
	GeneticsDesign (32)
	GeneticsPed (119)
	GeneTonic (370)
	GeneTraffic (8)
	GeneTS (5)
	geneXtendeR (126)
	GENIE3 (1263)
	genoCN (85)
	GenoGAM (21)
	genomation (684)
	genomationData (1)
	genomationdata (1)
	GenomAutomorphism (57)
	GenomeBase (2)
	GenomeGraphs (44)
	GenomeInfoDb (56357)
	GenomeInfoDB (1)
	GenomeInfoDbData (18)
	genomeinfodbdata (1)
	genomeIntervals (212)
	GenomelnfoDb (0)
	genomes (107)
	GenomicAlignments (24164)
	genomicalignments (1)
	GenomicDataCommons (1129)
	GenomicDistributions (117)
	GenomicDistributionsData (0)
	GenomicFeatures (19655)
	genomicfeatures (1)
	GenomicFiles (1339)
	genomicInstability (78)
	GenomicInteractionNodes (67)
	GenomicInteractions (439)
	GenomicOZone (94)
	GenomicPlot (89)
	GenomicRanges (44523)
	genomicranges (0)
	genomicRanges (1)
	GenomicScores (731)
	GenomicSuperSignature (84)
	GenomicTools (0)
	GenomicTuples (82)
	Genominator (40)
	GenOrd (1)
	genoset (41)
	genotypeeval (29)
	GenoView (8)
	genphen (17)
	GenProSeq (61)
	GenRank (13)
	GenSA (2)
	GenVisR (293)
	geobr (1)
	geodata (1)

	GeoDiff (89)
	geodiv (1)
	GEOexplorer (76)
	GEOfastq (95)
	geohashTools (0)
	geojson (1)
	geojsonio (1)
	geojsonlint (1)
	geojsonsf (1)
	GEOmap (8)
	GEOmetadb (270)
	geometadb (1)
	geomeTriD (8)
	geometries (21)
	geometry (1)
	geomorph (1)
	geomtextpath (1)
	GeomxTools (427)
	GeoMxWorkflows (1)
	GEOquery (9758)
	geoquery (1)
	GEoquery (0)
	geoR (0)
	geos (0)
	GEOsearch (10)
	geosphere (11)
	GEOsubmission (98)
	GeoTcgaData (171)
	gep2pep (77)
	gert (113)
	gespeR (102)
	gestalt (6)
	gestate (0)
	getDEE2 (69)
	getip (1)
	getopt (15)
	GetoptLong (2)
	getPass (3)
	getSVCNVperGene0.94 (0)
	gettz (0)
	geva (66)
	GEWIST (77)
	gff3Plotter (3)
	gfonts (1)
	gg4way (63)
	ggalluvial (1)
	GGally (22)
	ggalt (1)
	gganimate (1)
	GGBase (44)
	ggbeeswarm (4)
	ggbio (2088)
	ggbiploti (1)
	ggbreak (0)
	ggchicklet (1)
	ggcorrplot (2)
	ggcyto (877)
	ggdag (1)
	ggdendro (16)
	ggdensity (1)
	ggdist (7)
	gge (1)
	ggeasy (1)
	ggedit (1)
	ggeffects (3)
	ggExtra (5)
	ggfittext (2)
	ggforce (36)
	ggforestplot (0)
	ggformula (25)
	ggfortify (1)
	ggfun (69)
	gggenes (0)
	ggh4x (3)
	gghalves (0)
	gghighlight (1)
	ggimage (1)
	gginnards (0)
	ggiraph (8)
	ggiraphExtra (1)
	ggkegg (430)
	ggm (1)
	ggmanh (253)
	ggmap (5)
	ggmosaic (1)
	ggmsa (559)
	ggnetwork (1)
	ggnewscale (57)
	ggnewscales (0)
	gGnome (1)
	ggokabeito (0)
	GGPA (63)
	ggpattern (1)
	ggplot (1)
	ggplot2 (349)
	ggplot2movies (0)
	ggplotify (21)
	ggpmisc (4)
	ggPMX (1)
	ggpointdensity (6)
	ggpp (5)
	ggprism (2)
	ggpubr (23)
	ggRandomForests (0)
	ggrap2 (1)
	ggraph (29)
	ggraph2 (1)
	ggrastr (8)
	ggrepel (272)
	ggridges (39)
	ggsankey (1)
	ggsc (88)
	ggsci (62)
	ggseqalign (21)
	ggseqlogo (17)
	ggside (6)
	ggsignif (10)
	ggspavis (206)
	ggstance (2)
	ggstats (8)
	ggstatsplot (2)
	ggsurvfir (0)
	ggsurvfit (2)
	ggtern (80)
	ggtext (3)
	ggthemes (13)
	GGtools (47)
	ggtree (21641)
	ggtreeDendro (75)
	ggtreeExtra (1094)
	ggtreeSpace (40)
	ggupset (1)
	ggvegan (1)
	ggvenn (1)
	ggVennDiagram (2)
	ggvis (1)
	ggwordcloud (1)
	gh (127)
	ghpm (1)
	ghql (0)
	gifski (0)
	GIGSEA (69)
	GillespieSSA (0)
	gimme (1)
	ginmappeR (42)
	gINTomics (24)
	Giotto (0)
	girafe (129)
	GISPA (43)
	git2r (16)
	gitcreds (19)
	gitlabr (1)
	GLAD (244)
	GladiaTOX (68)
	glasso (0)
	glassoFast (1)
	glca (1)
	gld (1)
	Glimma (1137)
	gllvm (0)
	glmGamPoi (4808)
	GLMMadaptive (0)
	glmmADMB (0)
	glmmML (0)
	glmmTMB (3)
	glmnet (20)
	glmnetUtils (11)
	glmperm (1)
	glmSparseNet (239)
	glmx (0)
	GlobalAncova (1068)
	GlobalOptions (1)
	globals (58)
	globals, (0)
	globalSeq (77)
	globaltest (1920)
	GloScope (65)
	glpgStyle (0)

	glpgTesteR (0)
	glpkAPI (1)
	glue (207)
	gmailr (2)
	gmapR (204)
	gMCP (0)
	GmicR (84)
	Gmisc (1)
	gmm (1)
	gmnl (0)
	gmodels (1)
	gmoviz (75)
	gmp (18)
	GMRP (79)
	gmthemes (1)
	GNET2 (70)
	gnm (0)
	gnomAD (0)
	GNOSIS (71)
	GO.db (14)
	goCluster (2)
	GOdb (1)
	godm (0)
	godmode (1)
	GOexpress (110)
	goftest (1)
	GOfuncR (370)
	GOFunction (33)
	golem (11)
	golubEsets (1)
	gomms (0)
	gongs (1)
	goodpractice (1)
	googleAuthR (3)
	googleCloudStorageR (0)
	googledrive (32)
	GoogleGenomics (14)
	googlesheets (1)
	googlesheets4 (38)
	googleVis (1)
	GOplot (0)
	GOpro (172)
	goProfiles (163)
	GOSemSim (18563)
	GoSemSim (1)
	goseq (1410)
	goshawk (1)
	GOSim (105)
	goSorensen (80)
	goSTAG (87)
	GOstats (1618)
	gostats (1)
	GOsummaries (52)
	GOTHiC (105)
	goTools (101)
	gotop (1)
	gower (15)
	gp.version (1)
	GPA (72)
	GPArotation (8)
	gpart (22)
	GPfit (1)
	gplots (144)
	gpls (280)
	gprege (26)
	gprofiler2 (2)
	gpuMagic (70)
	gQTLBase (24)
	gQTLstats (26)
	GrafGen (39)
	grafify (1)
	gRain (1)
	gralarkivar (1)
	gramm4R (7)
	GRaNIE (150)
	granny (1)
	granulator (130)
	graper (69)
	grapg (0)
	graph (18882)
	GraphAlignment (86)
	GraphAT (108)
	graphat (1)
	GraphGallery (1)
	graphics (1)
	graphiQs (1)
	graphite (3148)
	graphlayouts (54)
	GraphPAC (131)
	graphql (1)
	grateful (1)
	grates (1)
	gratia (1)
	gRbase (1)
	grDevices (1)
	greekLetters (1)
	Greg (0)
	GRENITS (84)
	greybox (1)
	GreyListChIP (998)
	grf (0)
	grid (1)
	gridBase (1)
	gridExtra (1)
	gridGraphics (1)
	gridpattern (2)
	gridSVG (1)
	gridtext (3)
	grImport (1)
	grImport2 (1)
	GRmetrics (108)
	groHMM (97)
	groupdata2 (1)
	grpreg (0)
	grr (1)
	GRridge (25)
	GSA (1)
	gsalib (0)
	GSALightning (69)
	GSAR (126)
	gsbDesign (0)
	GSCA (89)
	gscounts (0)
	gscreend (71)
	gsDesign (1)
	GSEABase (9040)
	gseabase (0)
	GSEAbase (1)
	GSEABenchmarkeR (106)
	GSEAlm (117)
	GSEAmining (82)
	gsean (84)
	GSgalgoR (70)
	gsignal (1)
	gsl (3)
	gsmoothr (5)
	gson (5)
	gsrc (0)
	GSReg (93)
	GSRI (101)
	gss (4)
	gstat (2)
	gsubfn (1)
	GSVA (6899)
	gsva (1)
	GSVAdata (1)
	gsw (0)
	gt (36)
	gtable (199)
	GTAVTools (0)
	gtExtras (1)
	gto (0)
	gtools (45)
	gtreg (1)
	gtrellis (153)
	gtsummary (3)
	gtx (0)
	gubraqsar (0)
	GUIDEseq (109)
	Guitar (156)
	GUniFrac (1)
	gupio (1)
	gUtils (0)
	GUTS (0)
	Gviz (3606)
	GWAS.BAYES (75)
	gwascat (702)
	GWASExactHW (6)
	gwasglue (1)
	gwasrapidd (1)
	GWASTools (641)
	gwasurvivr (111)
	gwasvcf (1)
	GWENA (279)
	gWidgets (0)
	gWidgets2tcltk (0)
	gWidgetstcltk (0)
	gypsum (1751)

H

	h2o (4)
	h5vc (122)
	HAC (0)
	HaDeXGUI (1)
	hahmmr (1)
	hal9001 (0)
	HandTill2001 (1)
	hapFabia (93)
	haplo.stats (1)
	HaploBlocker (1)
	HaploSim (0)
	haplotrackR (1)
	hardhat (51)
	HardyWeinberg (0)
	Harman (191)
	HarmonizR (75)
	harmony (6)
	Harshlight (112)
	hash (1)
	haven (80)
	hca (77)
	HCABrowser (8)
	HCAExplorer (6)
	HCAMatrixBrowser (3)
	HCsnip (25)
	HDCytoData (1)
	hdf4r (1)
	hdf5 (1)
	HDF5 (1)
	HDF5Array (14701)
	hdf5r (11)
	hdi (0)
	HDInterval (11)
	HDLSSkST (1)
	hdm (0)
	hdnom (1)
	HDO.db (7)
	hdrcde (6)
	HDTD (70)
	hdxmsqc (28)
	heatmap.plus (0)
	heatmap3 (0)
	heatmaply (15)
	heatmaps (283)
	Heatplus (505)
	heemod (0)
	HelloRanges (153)
	HELP (94)
	helperMut (0)
	HEM (93)
	heplots (1)
	here (2)
	hermes (209)
	HERON (57)

	Herper (145)
	hetGP (1)
	hexbin (31)
	hexSticker (0)
	hexView (0)
	HGC (80)
	HGNChelper (1)
	hgu133a.db (2)
	hgu133plus2.db (7)
	hgu133plus2cdf (1)
	hgu219.db (0)
	hgu95a.db (1)
	hgu95av2.db (2)
	hgu95av2cdf (1)
	hgug4112a.db (0)
	hiAnnotator (134)
	HIBAG (132)
	HicAggR (38)
	HiCBricks (159)
	hicbricks (0)
	HiCcompare (289)
	HiCDCPlus (107)
	HiCDOC (121)
	HiCExperiment (172)
	HiClimR (0)
	HiContacts (126)
	HiCool (80)
	hicrep (11)
	hicVennDiagram (64)
	hierfstat (0)
	hierGWAS (86)
	hierinf (61)
	highcharter (1)
	highlight (0)
	highr (142)
	highs (0)
	HilbertCurve (111)
	HilbertVis (212)
	HilbertVisGUI (67)
	HiLDA (96)
	hipathia (227)
	HIPPO (70)
	hiReadsProcessor (95)
	HIREewas (74)
	HiTC (165)
	HiTME (1)
	hmdbQuery (96)
	Hmisc (37)
	HMMcopy (342)
	hms (44)
	hoardr (2)
	HoloFoodR (19)
	Homo.sapiens (5)
	hoodscanR (78)

	Hoover (1)
	hopach (357)
	Hotgenes (1)
	howmany (1)
	HPAanalyze (145)
	hpar (299)
	HPAStainR (12)
	HPC.R.Utilities (1)
	HPiP (70)
	HRaDeX (1)
	HRaDeXGUI (1)
	hrbrthemes (2)
	HSAUR (1)
	HSAUR2 (1)
	HSAUR3 (0)
	hsm (0)
	HSMMSingleCell (2)
	htmlTable (32)
	htmltools (342)
	htmlwidgets (162)
	HTqPCR (145)
	HTSanalyzeR (39)
	HTSeqGenie (71)
	htSeqTools (33)
	HTSFilter (245)
	htslib (0)
	httpcode (1)
	httpgd (2)
	httptest (3)
	httptest2 (1)
	httput (1)
	httpuv (329)
	httr (106)
	httr2 (150)
	HuBMAPR (6)
	HubPub (127)
	huge (0)
	hugene10sttranscriptcluster.db (2)
	HumanTranscriptomeCompendium (57)
	hummingbird (64)
	hunspell (30)
	huxtable (3)
	hwriter (1)
	HWxtest (0)
	HybridExpress (55)
	HybridMTest (158)
	hydroPSO (1)
	hypeR (119)
	hyperdraw (150)
	hypergate (1)
	hypergeo (1)
	hypergraph (203)
	hyperSpec (1)
	hypred (1)

I

	IAPWS95 (0)
	iASeq (81)
	iasva (86)
	iatlasGraphQLClient (1)
	iBBiG (148)
	ibh (87)
	iBMQ (73)
	iBreakDown (1)
	iC10 (1)
	iC10TrainingData (1)
	ica (3)
	iCARE (169)
	ICC (1)
	icenReg (0)
	Icens (472)
	IceR (1)
	icetea (77)
	iCheck (82)
	iChip (95)
	ichorCNA (0)
	iCiteR (3)
	iCluster (1)
	iClusterPlus (416)
	iCNV (85)
	iCOBRA (261)
	ICS (1)
	ICSNP (1)
	ICSOutlier (0)
	IDEAFilter (1)
	ideal (119)
	IdeoViz (96)
	ideoviz (1)
	idiogram (104)
	IdMappingAnalysis (28)
	IdMappingRetrieval (33)
	idorsiaQC (1)
	IDPmisc (3)
	idpr (87)
	idr (0)
	idr2d (74)
	ids (1)
	ieugwasr (0)
	IFAA (63)
	iFlow (7)
	ifultools (1)
	iGasso (0)
	iGC (83)
	IgGeneUsage (68)
	igraph (183)
	igraphdata (0)
	igvR (134)
	igvShiny (50)
	iheatmapr (2)
	IHW (731)
	ijtiff (1)
	Illumina450ProbeVariants.db (1)
	IlluminaHumanMethylation450kanno.ilmn12.hg19 (7)
	IlluminaHumanMethylation450kmanifest (5)
	IlluminaHumanMethylationEPICanno.ilm10b2.hg19 (5)
	IlluminaHumanMethylationEPICanno.ilm10b4.hg19 (5)
	IlluminaHumanMethylationEPICmanifest (5)
	IlluminaHumanMethylationEPICv2manifest (1)
	illuminaHumanv1.db (1)
	illuminaio (3047)
	ILoReg (68)
	imageHTS (47)
	imager (1)
	imagerExtra (0)
	IMAS (82)
	imbalance (0)
	imcRtools (231)
	Imetagene (21)

	iml (1)
	IMMAN (74)
	immApex (3)
	immunarch (1)
	ImmuneSpaceR (54)
	immunoClust (96)
	immunogenViewer (20)
	immunotation (70)
	IMPCdata (69)
	implyr (1)
	impmap (1)
	import (2)
	ImpulseDE (9)
	ImpulseDE2 (19)
	impute (10655)
	imputeTS (0)
	IncDTW (0)
	incidence (3)
	incidence2 (1)
	IncidencePrevalence (1)
	INDEED (60)
	ineq (0)
	iNETgrate (63)
	iNEXT (1)
	infer (15)
	infercnv (1136)
	inferCNV (1)
	infinityFlow (97)
	influenceR (1)
	InformationValue (1)
	Informeasure (62)
	infotheo (1)
	ingredients (1)
	ini (1)
	initiate.archr (1)
	InkblotAnalytics (6)
	INLA (0)
	inline (1)
	inlinedocs (0)
	InPAS (96)
	INPower (93)
	InraeThemes (1)
	insight (18)
	inSilicoDb (25)
	inSilicoMerging (26)
	INSPEcT (97)
	installr (1)
	INTACT (61)
	InTAD (80)
	intamap (1)
	intansv (110)
	interacCircos (75)
	InteractionSet (2021)
	InteractiveComplexHeatmap (426)
	interactiveDisplay (127)
	interactiveDisplayBase (6970)
	interactomes (1)
	InterCellar (90)
	IntEREst (96)
	intergraph (1)
	InterMineR (98)
	interp (16)
	interpretR (0)
	interval (0)
	intervals (6)
	IntOMICS (21)
	IntramiRExploreR (76)
	inum (3)
	inveRsion (27)
	invgamma (0)
	IONiseR (101)
	iontree (24)

	iotools (1)
	iPAC (157)
	ipaddress (1)
	iPath (60)
	IPCAPS (1)
	ipcwswitch (0)
	ipdDb (206)
	IPDfromKM (0)
	ipmisc (0)
	IPO (205)
	IPPD (28)
	ipred (29)
	ips (2)
	iptmnetr (1)
	ipw (1)
	iq (1)
	irace (0)
	IRanges (53096)
	iranges (1)
	iRanges (1)
	IRdisplay (1)
	IRISFGM (66)
	IrisSpatialFeatures (6)
	IRkernel (1)
	irlba (16)
	irr (1)
	ISAnalytics (70)
	iSEE (518)
	iSEEde (80)
	iSEEfier (46)
	iSEEhex (169)
	iSEEhub (209)
	iSEEindex (68)
	iSEEpathways (66)
	iSEEtree (32)
	iSEEu (140)
	iSeq (78)
	ISLET (70)
	ISLR (1)
	iSNetwork (3)
	Iso (0)
	isoband (37)
	isobar (117)
	IsoBayes (57)
	ISOcodes (1)
	IsoCorrectoR (132)
	IsoCorrectoRGUI (76)
	IsoformSwitchAnalyzeR (283)
	IsoGeneGUI (38)
	ISoLDE (63)
	isomiRs (186)
	iSPlot (4)
	isva (5)
	ISwR (1)
	ITALICS (99)
	ITALICSData (1)
	iterativeBMA (97)
	iterativeBMAsurv (82)
	iterativebmasurv (0)
	iterators (5)
	iterClust (43)
	iteremoval (15)
	itertools (1)
	ITKR (1)
	itsadug (0)
	IVAS (109)
	ivpack (0)
	ivprobit (0)
	ivreg (0)
	ivs (1)
	ivygapSE (77)
	IWTomics (94)

J

K

	kableExtra (21)
	kangar00 (0)
	karyoploteR (857)
	KaryoploteR (0)
	karyoploter (1)
	katdetectr (80)
	katex (1)
	KBoost (59)
	KCsmart (104)
	kebabs (166)
	kedd (0)
	KEGG.db (1)
	KEGGdzPathwaysGEO (1)
	KEGGgraph (5489)
	kegggraph (0)
	KEGGlincs (96)
	keggorth (5)
	keggorthology (257)
	KEGGprofile (40)
	KEGGREST (36175)
	keggrest (1)

	KEGGSOAP (16)
	keggsvg (0)
	Kendall (1)
	keras (7)
	KernelKnn (0)
	kernlab (39)
	KernSmooth (78)
	Kernsmooth (1)
	keyring (6)
	KFAS (0)
	khroma (1)
	kimod (12)
	kinship2 (2)
	KinSwingR (74)
	kissDE (85)
	kit (0)
	kknn (0)
	klaR (4)
	km.ci (1)
	kmcut (17)
	kmed (0)

	kmknn (0)
	kml (0)
	kml3d (0)
	kmlShape (1)
	KMsurv (0)
	knitr (294)
	knitrdata (0)
	knockoff (0)
	KnowSeq (81)
	knowYourCG (37)
	KODAMA (0)
	kohonen (1)
	koinar (8)
	kpmt (0)
	kriging (0)
	ks (6)
	kSamples (2)
	ktplots (0)
	kutils (1)
	kyotil (1)

L

	L1pack (1)
	l2p (1)
	labdsv (0)
	labeling (129)
	labelled (14)
	LACE (207)
	laeken (2)
	Lahman (0)
	lambda.r (1)
	lambdr (1)
	LambertW (3)
	lamW (3)
	landscapemetrics (1)
	languageserver (1)
	LaplacesDemon (1)
	lapmix (88)
	lars (0)
	lasso2 (0)
	lastdose (1)
	latentnet (1)
	later (153)
	latex2exp (1)
	lattice (200)
	latticeExtra (7)
	lava (53)
	lavaan (19)
	lavaanPlot (1)
	lavaSearch2 (0)
	lazy (1)
	lazyeval (2)
	lbaQcCheck (1)
	LBE (239)
	lbe (1)
	lbfgs (0)
	lbfgsb3c (1)
	lcopula (0)
	lda (1)
	ldap (0)
	ldblock (120)
	LDheatmap (1)
	LDlinkR (0)
	LDplots (1)
	LEA (555)
	leadfindingreport (1)
	leafcutter (0)
	leafem (1)
	leaflegend (3)
	leaflet (6)
	leaflet.extras (3)
	leaflet.minicharts (0)
	leaflet.providers (2)
	leafpop (1)
	leafsync (1)
	leaps (7)
	LearnBayes (0)
	learnr (5)
	LedPred (68)
	lefser (558)
	leiden (23)
	leidenAlg (1)

	leidenbase (12)
	lemon (2)
	lemur (88)
	les (131)
	levi (61)
	lfa (306)
	lfda (1)
	lfe (1)
	lgr (1)
	lhs (15)
	liana (1)
	libcoin (4)
	libgeos (0)
	LiblineaR (11)
	libr (1)
	libwebp (1)
	lifecycle (201)
	liftOver (1)
	liger (2)
	lightgbm (2)
	limma (33511)
	limmaGUI (113)
	limmia (0)
	limpca (38)
	limSolve (1)
	LINC (13)
	LineagePulse (35)
	lineagespot (68)
	LinkHD (80)
	LinMod2 (1)
	Linnorm (243)
	linprog (1)
	LinTInd (70)
	lintr (109)
	lionessR (75)
	lipidr (185)
	LiquidAssociation (122)
	liquidSVM (0)
	lisaClust (149)
	lisrelToR (1)
	listenv (57)
	listviewer (1)
	littler (1)
	lixoftConnectors (0)
	lixoftConnectors.1 (0)
	lixoftConnectors.2 (0)
	lle (0)
	lm.beta (0)
	lmdme (90)
	lme4 (123)
	lmerTest (1)
	LMGene (36)
	LMI (1)
	lmodel2 (0)
	lmom (12)
	lmomco (1)
	Lmoments (1)
	lmtest (4)
	LOBSTAHS (121)
	lobstr (3)

	locfdr (0)
	locfit (85)
	loci2path (84)
	lockfit (1)
	log4r (5)
	logcondens (0)
	logger (20)
	logging (1)
	logicFS (121)
	LogicReg (1)
	logistf (11)
	logitnorm (1)
	logitr (0)
	logitT (44)
	logitt (1)
	Logolas (14)
	logolas (0)
	logr (1)
	logrrr (1)
	logrx (1)
	logspline (1)
	lokern (1)
	lol (21)
	LOLA (305)
	lomb (1)
	longComplexHeatmap (1)
	longitudinal (0)
	longitudinalData (0)
	longmemo (0)
	loo (16)
	LoomExperiment (636)
	lotri (1)
	loupeR (1)
	LowMACA (27)
	LowRankQP (1)
	LPE (124)
	LPEadj (58)
	lpNet (102)
	lpridge (1)
	lpSolve (10)
	lpSolveAPI (1)
	lpsymphony (1006)
	lqa (0)
	lqmm (0)
	LRBaseDbi (135)
	LRcell (67)
	lsa (7)
	LSAF (1)
	lsei (1)
	lsmeans (0)
	lubridate (81)
	lumi (1280)
	Luminescence (1)
	lute (40)
	lvec (0)
	LVSmiRNA (33)
	lwgeom (3)
	LymphoSeq (95)

M

	m03modeldevelopment (0)
	M3C (683)
	M3D (19)
	M3Drop (670)
	m6Aboost (64)
	maanova (49)
	Maaslin2 (1017)
	maboost (1)
	Macarron (114)
	macat (64)
	maCorrPlot (87)
	MACPET (17)
	macrophage (1)
	MACSQuantifyR (58)
	MACSr (120)
	maDB (17)
	made4 (300)
	maditr (1)
	madness (0)
	MADSEQ (85)
	maftools (2587)
	MAGAR (177)
	MAGeCKFlute (364)
	mageckflute (1)
	magic (1)
	magick (22)
	magpie (65)
	magrene (67)
	magrittr (13)
	MAI (78)
	maic (0)
	maicChecks (0)
	maigesPack (63)
	mailR (0)
	MAIT (166)
	makecdfenv (219)
	makePlatformDesign (7)
	maketools (1)
	MALDIquant (5)
	manipulate (1)
	manipulateWidget (0)
	MANOR (100)
	manta (32)
	MantelCorr (79)
	mantelcorr (0)
	maotai (0)
	mapbayr (0)
	mapboxapi (1)
	mapdata (1)
	mapDataAccess (1)
	MAPFX (42)
	mAPKL (28)
	mapplots (0)
	mapproj (2)
	maPredictDSC (91)
	maps (10)
	mapscape (67)
	maptools (19)
	maptree (0)
	mapview (1)
	marginaleffects (1)
	margins (1)
	mariner (74)
	Markdown (0)
	markdown (86)
	markovchain (1)
	marqLevAlg (0)
	marr (71)
	marray (1983)
	martini (80)
	maser (147)
	maSigPro (294)
	maskBAD (97)
	MASS (373)
	MassArray (78)
	massdataset (1)
	massHelper (0)
	massiR (90)
	MassSpecWavelet (1811)
	masstools (1)
	massTRACE2Tools (1)
	MAST (2133)
	mastR (205)
	matchBox (77)
	Matching (3)
	MatchIt (3)
	matchprobes (9)
	MatchThem (1)
	mathjaxr (1)
	matlib (0)
	Matri (1)
	Matrix (451)
	matrix (1)
	Matrix.utils (1)
	matrixcalc (1)
	MatrixEQTL (1)
	MatrixExtra (2)
	MatrixGenerics (39901)
	MatrixModels (81)
	MAtrixModels (1)
	MatrixQCvis (219)
	MatrixRider (88)
	matrixStats (187)
	matrixStatst (1)
	matrixTests (1)
	matter (253)
	MaxContrastProjection (15)
	maxLik (1)
	maxstat (1)
	MBA (6)
	MBAmethyl (65)
	MBASED (82)
	MBCB (90)
	MBCluster.Seq (1)
	MBECS (89)
	mbend (0)
	MBESS (1)
	mbkmeans (408)
	mbOmic (8)
	mboost (3)
	mBPCR (98)
	MBQN (78)
	mbQTL (62)
	MBttest (77)
	mc2d (2)
	mcaGUI (34)
	MCbiclust (81)
	mclogit (0)
	mclust (16)
	mclustcomp (0)
	mcmc (1)
	mcmcabn (1)
	MCMCglmm (1)
	MCMCpack (3)
	MCMCprecision (1)
	MCPcounter (0)
	mcr (8)
	MCRestimate (34)
	mCSEA (123)
	mctq (1)
	mcv (1)
	mda (1)
	mdgsa (23)
	mdmb (1)
	mdp (75)
	mdqc (136)
	MDTS (71)
	MEAL (112)
	MeasurementError.cor (84)
	measurements (0)
	measures (0)
	MEAT (72)
	MEB (70)
	medflex (0)
	mediation (0)
	MEDIPS (149)
	MEDME (93)
	megadepth (150)
	MEIGOR (92)
	Melissa (72)
	memes (225)
	memisc (1)
	memoise (11)
	MEMSS (0)
	memuse (1)
	MendelianRandomization (3)
	merDeriv (0)
	merge (1)
	MergeMaid (40)
	Mergeomics (90)
	merTools (0)
	MeSHDbi (275)
	meshes (173)
	meshr (161)
	MeSHSim (8)
	MesKit (98)
	MESS (2)
	messina (86)
	meta (0)
	metaArray (39)
	metaarray (1)
	Metab (115)
	metabaser (1)
	metabCombiner (104)
	metabinR (57)
	metaBLUE (0)
	metaBMA (0)
	MetaboAnalystR (1)
	MetaboAnnotation (291)
	MetaboCoreUtils (1917)
	metabolomics (0)
	metabolomicsWorkbenchR (99)
	metabomxtr (84)
	MetaboReport (0)
	MetaboSignal (143)
	metaCCA (137)
	metacore (1)
	MetaCyto (100)
	metadat (0)
	metafor (6)
	metagene (38)
	metagene2 (92)
	metagenomeFeatures (21)
	metagenomeSeq (1664)

	MetaGxOvarian (3)
	metahdep (92)
	metaMA (7)
	metaMS (199)
	MetaNeighbor (113)
	metap (11)
	MetaPhOR (83)
	metaplot (0)
	metaplus (0)
	metapod (4891)
	metapone (78)
	metaSeq (98)
	metaseqR (32)
	metaseqR2 (97)
	MetaSKAT (0)
	metatools (1)
	MetaUtility (0)
	metavizr (21)
	MetaVolcanoR (52)
	metaX (6)
	MetCirc (103)
	MethCP (13)
	methimpute (81)
	methInheritSim (91)
	methodical (33)
	methods (1)
	MethPed (81)
	MethReg (78)
	methrix (107)
	MethTargetedNGS (78)
	methVisual (31)
	methyAnalysis (39)
	MethylAid (123)
	methylCC (90)
	methylclock (171)
	methylclockData (1)
	methylGSA (140)
	methyLImp2 (44)
	methylInheritance (88)
	methylKit (654)
	MethylMix (119)
	methylMnM (108)
	methylPipe (157)
	methylscaper (100)
	MethylSeekR (169)
	methylSig (101)
	methylumi (1596)
	methyvim (16)
	MetID (80)
	metid (1)
	MetMashR (6)
	MetNet (80)
	metpath (1)
	MeTPeak (1)
	metR (2)
	Metrics (1)
	metrumrg (1)
	mets (1)
	mev (0)
	mfa (117)
	mFilter (0)
	Mfuzz (1356)
	mfuzz (0)
	mfx (0)
	mg14 (0)
	mgcv (252)
	MGFM (92)
	MGFR (91)
	mgm (0)
	MGnifyR (65)
	mgsa (138)
	mGSZ (1)
	mgvc (1)
	mhsmm (1)
	mhurdle (0)
	mi (0)
	mia (1551)
	miaSim (92)
	miaViz (280)
	mice (12)
	miceadds (1)
	MiChip (86)
	MicrobaCommunityProfileReader (1)
	microbenchmark (9)
	microbiome (1755)
	MicrobiomeAnalystR (1)
	microbiomeDASim (77)
	microbiomeExplorer (95)
	microbiomeMarker (401)
	MicrobiomeProfiler (141)
	MicrobiotaProcess (516)
	microeco (1)
	micromap (0)
	microRNA (187)
	microseq (0)
	Microsoft365R (0)
	microSTASIS (65)
	MICSQTL (58)
	midasHLA (71)
	MIGSA (23)
	MIIVsem (0)
	miloR (343)
	mimager (90)
	mime (12)
	MIMOSA (37)
	mimosa (0)
	mina (60)
	MineICA (106)
	minerva (0)
	minet (846)
	minfi (2507)
	minfiData (1)
	MinimumDistance (125)
	miniUI (1)
	minpack.lm (5)
	minqa (107)
	MiPP (99)
	miQC (126)
	MIRA (138)
	MiRaGE (97)
	mirai (3)
	miRBaseConverter (120)
	miRcomp (85)
	mirIntegrator (96)
	MIRit (54)
	miRLAB (100)
	miRmine (47)
	miRNAmeConverter (85)
	miRNApath (91)
	miRNAtap (180)
	miRSM (71)
	miRsponge (11)
	miRspongeR (65)
	Mirsynergy (23)
	mirt (5)
	mirTarRnaSeq (83)
	misc3d (1)
	miscTools (1)
	missForest (1)
	missMDA (1)
	missMethyl (1070)
	missRanger (1)
	missRows (77)
	misty (1)
	mistyR (111)
	mitch (75)
	mitml (1)
	mitoClone2 (94)
	mitoODE (25)
	mitools (1)
	mix (1)
	mixOmics (2646)
	mixsqp (19)
	mixtools (1)
	mixture (1)
	MKmisc (1)
	mlbench (12)
	MLEcens (0)
	mlegp (0)
	mlfa (0)
	mlflow (0)
	MLInterfaces (489)
	mlm4omics (4)
	MLmetrics (1)
	mlmm (1)
	mlmm.gwas (0)
	mlmRev (0)
	mlogit (0)
	MLP (183)
	mlpack (1)
	mlr (1)
	mlr3 (2)
	mlr3cluster (1)
	mlr3data (0)
	mlr3filters (1)
	mlr3fselect (1)
	mlr3hyperband (0)
	mlr3learners (1)
	mlr3mbo (1)
	mlr3measures (1)
	mlr3misc (1)
	mlr3pipelines (1)
	mlr3proba (1)
	mlr3spatiotempcv (1)
	mlr3tuning (1)
	mlr3tuningspaces (1)
	mlr3verse (1)
	mlr3viz (1)
	MLSeq (187)
	mlt (0)
	mltools (0)
	mma (1)
	MMAPPR2 (24)
	MMDiff (21)
	MMDiff2 (80)
	mmgmos (3)
	mmnet (22)
	MmPalateMiRNA (35)
	mmrm (35)
	MMUPHin (153)
	mnem (171)
	mnormt (14)
	MNP (0)
	moanin (222)

	mobileRNA (40)
	MobilityTransformR (73)
	mobster (0)
	mockery (2)
	mockr (0)
	MODA (82)
	ModCon (59)
	modeest (1)
	modelbased (3)
	modeldata (14)
	modelenv (2)
	ModelMetrics (2)
	modelObj (1)
	modelr (29)
	ModelR (1)
	modelsummary (1)
	modeltests (0)
	modeltime (1)
	modeltime.ensemble (2)
	modeltools (1)
	modetest (1)
	modEvA (1)
	MODIStsp (2)
	Modstrings (219)
	modules (1)
	MOFA (9)
	MOFA2 (521)
	MOGAMUN (70)
	mogsa (238)
	moleculaR (0)
	MoleculeExperiment (89)
	MOMA (77)
	moments (3)
	Momocs (1)
	monaLisa (174)
	mondate (1)
	mongolite (1)
	monkey (1)
	monocle (3271)
	monocle3 (1)
	monolix2rx (1)
	MonoPhy (1)
	Moonlight2R (68)
	MoonlightR (104)
	MoPS (17)
	morpheus (1)
	Morpho (0)
	mosaic (1)
	mosaicCore (25)
	mosaicData (1)
	mosaics (199)
	mosbi (66)
	MOSClip (6)
	mosdef (81)
	MOSim (81)
	Motif2Site (68)
	motifbreakR (231)
	motifcounter (81)
	MotifDb (651)
	motifmatchr (1382)
	MotifPeeker (1)
	motifRG (32)
	motifStack (732)
	motifTestR (53)
	MotIV (48)
	mouse4302.db (0)
	MouseFM (204)
	MouseGastrulationData (1)
	MPA (0)
	MPAC (20)
	mpath (0)
	MPFE (69)
	MplusAutomation (1)
	mpm (1)
	mpn.scorecard (1)
	mppR (0)
	mpra (87)
	MPRAnalyze (88)
	MPV (1)
	MQmetrics (28)
	mQTL.NMR (19)
	mratios (0)
	mrgda (1)
	mrggsave (1)
	mrgmisc (1)
	mrgsolve (1)
	mrgvalidate (1)
	mrgvalprep (1)
	msa (1731)
	MSA2dist (142)
	msatR (1)
	MsBackendMassbank (96)
	MsBackendMetaboLights (7)
	MsBackendMgf (417)
	MsBackendMsp (328)
	MsBackendRawFileReader (82)
	MsBackendSql (92)
	MsCoreUtils (3700)
	msdata (1)
	MsDataHub (90)
	MSEADbi (6)
	MsExperiment (1511)
	MsFeatures (1575)
	msgbsR (89)
	MSGFgui (24)
	MSGFplus (26)
	msigdb (1)
	msigdbr (6)
	msImpute (207)
	mslp (56)
	msm (6)
	msmsEDA (301)
	msmsTests (291)
	MSnbase (3247)
	msnbase (1)
	Msnbase (1)
	MSnID (337)
	mspms (1)
	MSPrep (208)
	msPurity (100)
	msQC (0)
	msqrob2 (170)
	MsQuality (79)
	MSstats (537)
	MSstatsBig (59)
	MSstatsConvert (488)
	MSstatsLiP (94)
	MSstatsLOBD (71)
	MSstatsPTM (223)
	MSstatsQC (104)
	MSstatsQCgui (69)
	MSstatsSampleSize (20)
	MSstatsShiny (121)
	MSstatsTMT (304)
	MSstatsTMTPTM (6)
	MSstatsTMTs (0)
	mstate (1)
	MSwM (0)
	mtbls2 (0)
	MTseeker (5)
	mtvnorm (1)
	MuData (81)
	muhaz (0)
	Mulcom (106)
	mulcom (1)
	multcomp (120)
	multcompView (16)
	multgee (0)
	MultiAssayExperiment (6301)
	MultiBaC (95)
	multiClust (110)
	multicool (5)
	multicrispr (80)
	multicross (1)
	MultiDataSet (1279)
	multidplyr (1)
	multiGSEA (151)
	multiHiCcompare (182)
	MultiMed (82)
	multiMiR (260)
	MultimodalExperiment (56)
	multimode (0)
	multinichenetr (0)
	multinma (1)
	multiOmicsViz (44)
	multipanelfigure (1)
	MultiRNAflow (79)
	multiscan (92)
	multiSight (58)
	multistateQTL (35)
	multiwayvcov (0)
	multiWGCNA (94)
	multtest (12454)
	MuMIn (1)
	mumosa (90)
	MungeSumstats (1047)
	munsell (114)
	muscat (535)
	muscData (0)
	muscle (368)
	musicatk (107)
	MutationalPatterns (329)
	mutationalpatterns (1)
	MutationTimeR (0)
	mutoss (8)
	mutSigExtractor (0)
	mvabund (0)
	MVCClass (141)
	mvGST (17)
	mvna (0)
	mvnfast (0)
	mvnormtest (0)
	mvpart (1)
	mvtnorm (126)
	MWASTools (184)
	mwcsr (1)
	mycor (1)
	mygene (360)
	myphd (0)
	myTAI (1)
	myvariant (105)
	mzID (3132)
	mzR (3365)
	mzr (1)

N

	n1qn1 (1)
	N2R (1)
	nabor (1)
	NACHO (1)
	NADA (5)
	NADfinder (87)
	NADIA (1)
	name (1)
	namer (1)
	naniar (3)
	nanoarrow (1)
	NanoMethViz (106)
	nanonext (2)
	nanopipeline (1)
	NanoPyx (0)
	NanoStringDiff (106)
	NanoStringNCTools (425)
	NanoStringNorm (1)
	NanoStringQCPro (38)
	nanostringr (1)
	nanotatoR (86)
	nanotime (1)
	NanoTube (95)
	narray (0)
	NarrowPeaks (30)
	nasapower (1)
	nat.util (0)
	nat.utils (0)
	natserv (1)
	naturalsort (0)
	NBAMSeq (192)
	NbClust (1)
	nbpMatching (0)
	NBSplice (18)
	ncappc (1)
	ncar (1)
	ncbit (0)
	ncdf4 (13)
	ncdf4.1 (0)
	ncdfFlow (1128)
	ncGTW (147)
	NCIgraph (134)
	ncmeta (1)
	NCmisc (1)
	ncRNAtools (70)
	ncvreg (1)
	ndexr (87)
	ndjson (0)
	neaGUI (16)
	nearBynding (72)
	Nebulosa (1199)
	negligible (1)
	NeighborNet (27)
	nem (45)
	NEMO (0)
	nempi (78)
	neo2R (1)
	NEONiso (0)
	neonUtilities (1)
	nephro (0)

	nestcolor (1)
	nestedcv (1)
	nestedLogit (0)
	nestedmodels (0)
	NetActivity (66)
	netbenchmark (18)
	NetBID2 (1)
	netbiov (46)
	netboost (67)
	netboxr (12)
	NetCoMi (1)
	NetCRG (0)
	netDx (58)
	nethet (97)
	netmeta (0)
	netOmics (30)
	NetPathMiner (80)
	NetPreProc (1)
	netprioR (69)
	netrankr (0)
	netReg (16)
	NetRep (1)
	netresponse (108)
	NetSAM (121)
	netSmooth (90)
	NetSwan (0)
	network (2)
	networkBMA (35)
	networkD3 (1)
	networkDynamic (1)
	netZooR (81)
	NeuCA (52)
	neuralnet (0)
	NeuralNetTools (0)
	neuRosim (0)
	NewWave (123)
	nFactors (0)
	NGCHM (1)
	NGCHMDemoData (1)
	NGCHMSupportFiles (1)
	NGLVieweR (0)
	NGScopy (16)
	ngsReports (92)
	NHANES (0)
	nhanesA (0)
	nichenetr (1)
	nimble (0)
	nipals (1)
	nipalsMCIA (63)
	NISTunits (0)
	NlcOptim (0)
	nleqslv (2)
	nlme (245)
	nlmeODE (1)
	nlmixr2 (1)
	nlmixr2data (1)
	nlmixr2est (1)
	nlmixr2extra (1)
	nlmixr2lib (1)
	nlmixr2plot (1)

	nlmixr2rpt (0)
	nloptr (49)
	NLP (2)
	nls2 (1)
	nlstools (1)
	NMcalc (1)
	NMdata (1)
	NMF (14)
	NMproject (1)
	nmrec (1)
	NMsim (0)
	nnet (45)
	NNgenesets (1)
	NNLM (0)
	nnls (9)
	nnNorm (100)
	nnSVG (148)
	NNutils (1)
	noctua (1)
	NoiseFiltersR (0)
	NOISeq (633)
	nominatimlite (1)
	NonCompart (1)
	nondetects (62)
	nonmem2R (0)
	nonmem2rx (1)
	nonmemica (0)
	nonnest2 (1)
	nor1mix (2)
	NoRCE (74)
	nordpred (1)
	norm (1)
	normalize450K (75)
	NormalizerDE (0)
	NormalyzerDE (190)
	NormqPCR (183)
	normr (154)
	NORMT3 (1)
	nortest (1)
	notame (1)
	Nozzle.R1 (0)
	np (0)
	NPARC (88)
	npde (1)
	npGSEA (94)
	nphRCT (0)
	npsurv (1)
	nseval (1)
	NTW (85)
	nucleoSim (81)
	nucleR (122)
	nuCpos (73)
	nudge (26)
	nullranges (203)
	numbat (9)
	numbers (1)
	numDeriv (2)
	NuPoP (100)
	NxtIRFcore (12)
	nycflights13 (0)

O

	oaqc (0)
	Obigolem (0)
	occugene (85)
	oce (1)
	oceanflow (1)
	OceanView (0)
	OCplus (119)
	octad (79)
	od (1)
	odbc (25)
	oddsratio (0)
	ODER (8)
	odseq (83)
	odyproteomicsValidator (0)
	officedown (2)
	officer (26)
	OGRE (75)
	OGSA (16)
	OHCA (2)
	OhdsiShinyModules (1)
	oligo (1695)
	oligoClasses (1699)
	OLIN (137)
	OLINgui (99)
	OlinkAnalyze (1)
	olsrr (1)
	omada (64)
	OmaDB (286)
	omicade4 (198)
	OmicCircos (205)
	omicplotR (86)
	omicRexposome (87)
	omicsbase (0)
	OmicsLonDA (19)
	OmicsMarkeR (19)
	omicsmarker (0)
	OmicsMLRepoR (7)
	OMICsPCA (88)
	omicsPrint (88)
	omicsViewer (69)
	Omixer (73)
	omnibus (1)
	OmnipathR (641)
	omopgenerics (1)
	ompBAM (131)
	ompr (1)
	ompr.roi (1)
	omXplore (8)
	Onassis (18)
	onbrand (0)

	OncoBayes2 (0)
	oncomarkerbase (1)
	oncomix (75)
	oncoscanR (72)
	OncoScore (88)
	OncoSimulR (90)
	oneChannelGUI (42)
	onechannelgui (1)
	oneSENSE (28)
	onlineFDR (61)
	ontoCAT (26)
	ontologyIndex (20)
	ontologyPlot (1)
	ontoProc (282)
	ontoTools (15)
	oompaBase (5)
	oompaData (5)
	opdisDownsampling (1)
	openCyto (669)
	openeo (1)
	OpenMx (1)
	openPrimeR (179)
	openPrimeRui (68)
	openssl (435)
	openSTARS (0)
	OpenStats (62)
	openxlsx (77)
	openxlsx2 (1)
	OperaMate (10)
	operator.tools (1)
	oposSOM (119)
	oppar (91)
	oppti (64)
	optextras (1)
	OptiLCMS (1)
	optimalFlow (82)
	optimParallel (0)
	optimr (1)
	optimx (6)
	optmatch (3)
	optparse (45)
	optpart (0)
	optweight (1)
	OPWeight (76)
	orca (1)
	OrderedList (105)
	orderedlist (1)
	ordinal (7)
	ore (1)
	ORFhunteR (73)

	ORFik (203)
	org.Ag.eg.db (0)
	org.At.tair.db (1)
	org.Bt.eg.db (1)
	org.Ce.eg.db (1)
	org.Cf.eg.db (1)
	org.Dm.eg.db (1)
	org.Dr.eg.db (1)
	org.Gg.eg.db (1)
	org.Hs.eg.db (14)
	org.Hs.eg.dB (1)
	org.Hs.eg.db.html (0)
	org.Mm.eg.db (13)
	org.Mmu.eg.db (0)
	org.Psativumv2.eg.db (1)
	org.Pt.eg.db (0)
	org.Rn.eg.db (9)
	org.Sc.sgd.db (1)
	org.Ss.eg.db (1)
	org.Xl.eg.db (0)
	Organism.dplyr (432)
	OrganismDbi (3119)
	oricvis (1)
	orientlib (0)
	origami (0)
	orthogene (348)
	Orthology.eg.db (0)
	orthopolynom (0)
	orthos (63)
	OSAT (112)
	OSCA (5)
	OSCA.advanced (14)
	OSCA.basic (18)
	OSCA.intro (51)
	OSCA.multisample (17)
	OSCA.workflows (31)
	Oscope (112)
	oskeyring (0)
	osmdata (5)
	osprey (1)
	osqo (1)
	osqp (3)
	otargen (1)
	OTUbase (99)
	OutlierD (35)
	outliers (1)
	OUTRIDER (224)
	OutSplice (63)
	overlapping (0)
	OVESEG (87)

P

	PAA (97)
	PACKAGE (0)
	packcircles (1)
	packer (0)
	packFinder (79)
	packrat (22)
	pacman (0)
	padma (76)
	PADOG (347)
	padr (1)
	pagedown (2)
	pageRank (72)
	pagoda2 (0)
	PAIRADISE (111)
	paircompviz (89)
	PairedData (0)
	pairedGSEA (65)
	pairkat (96)
	pairseqsim (4)
	pairwiseComparisons (0)
	pak (4)
	paletteer (10)
	Palimpsest (0)
	palmerpenguins (1)
	palr (1)
	pals (3)
	pammtools (1)
	pamr (15)
	pan (1)
	pandaR (147)
	pander (2)
	pandoc (1)
	panelcn.mops (103)
	panelr (1)
	PAnnBuilder (33)
	PanomiR (80)
	panp (120)
	PANR (94)
	PanViz (52)
	PanVizGenerator (19)
	PAPi (31)
	paquet (1)
	paradox (1)
	parallel (1)
	parallelDist (1)
	parallelly (196)
	parallelMap (0)
	parallely (1)
	param6 (1)
	parameters (12)
	ParamHelpers (0)
	parathyroidSE (1)
	parcats (1)
	PARdesign (1)
	pareg (66)
	parglms (77)
	parody (138)
	parquetize (1)
	parrallely (1)
	parsedate (3)
	parsnip (15)
	partCNV (55)
	partitions (0)
	party (75)
	partykit (4)
	pasilla (1)
	PAST (72)
	pastecs (1)
	PASWR (0)
	patch (1)
	patchwork (80)
	Path2PPI (84)
	pathfindR (1)
	pathfindR.data (1)
	pathifier (118)
	PathInterpolatR (1)
	pathlinkR (60)
	PathNet (94)
	PathoStat (167)
	pathprint (13)
	pathRender (104)
	pathVar (25)
	pathview (4592)
	pathwayPCA (93)
	pathways (1)
	PathwaySplice (12)
	PatientGeneSets (6)
	PatientProfiles (1)
	patientProfilesVis (1)
	patrick (0)
	paws (15)
	paws.analytics (15)
	paws.application.integration (15)
	paws.common (127)
	paws.compute (82)
	paws.cost.management (15)
	paws.customer.engagement (15)
	paws.database (15)
	paws.developer.tools (15)
	paws.end.user.computing (15)
	paws.machine.learning (15)
	paws.management (15)
	paws.networking (15)
	paws.security.identity (15)
	paws.storage (124)
	paxtoolsr (120)
	pbapply (29)
	Pbase (22)
	pbcmc (9)
	pbdZMQ (2)
	PBIR (0)
	pbivnorm (0)
	pbkrest (0)
	pbkrtest (52)
	pbmcapply (1)
	pbmcref.SeuratData (1)
	PBSddesolve (1)
	PBSmapping (0)
	pbv (1)
	pcaExplorer (479)
	pcaGoPromoter (28)
	pcalg (1)
	pcaMethods (5275)
	pcamethods (0)
	PCAmixdata (1)
	PCAN (87)
	pcaPP (20)
	PCAtools (1256)
	PCDimension (0)
	pch (0)
	PCHiCdata (1)
	PCICt (0)
	pcot2 (44)
	PCpheno (36)
	pcse (0)
	pctGCdata (0)
	pcxn (57)
	pd.atdschip.tiling (0)
	pd.clariom.s.human (0)
	pd.hg.u133.plus.2 (0)
	pd.hta.2.0 (1)
	pd.mouse430.2 (0)
	PDATK (186)
	pdfCluster (1)
	pdftools (7)
	pdInfoBuilder (150)
	pdist (1)
	pdmclass (33)
	pdp (1)
	PeacoQC (264)
	PeakcoQC (1)
	peakPantheR (77)
	peakPick (0)
	PearsonDS (1)
	pec (1)
	PECA (94)
	peco (69)
	pedigree (0)
	pedigreemm (1)
	Pedixplorer (39)
	pedtools (1)
	pegas (2)
	pegboard (0)
	PEIP (1)
	PEMM (1)
	penalized (0)
	pengls (58)
	peperr (0)
	PepSetTest (19)
	PepsNMR (154)
	pepStat (80)
	Peptides (1)
	pepXMLTab (85)

	PERFect (32)
	performance (12)
	PerformanceAnalytics (1)
	periodicDNA (69)
	perm (8)
	permimp (0)
	permute (2)
	perturbatr (12)
	PFAM.db (11)
	pfamAnalyzeR (268)
	PFIM (1)
	PFP (11)
	PGA (21)
	pga (0)
	pgca (65)
	pgirmess (1)
	PGSEA (74)
	pgUtils (10)
	pgxRpi (42)
	phangorn (3)
	phantasus (242)
	phantasusLite (73)
	PharmacoGx (303)
	pharmaRTF (0)
	pharmaversesdtm (0)
	pheatmap (1)
	phemd (30)
	phenoDist (24)
	PhenoGeneRanker (55)
	phenomis (76)
	phenopath (110)
	phenoTest (168)
	PhenStat (90)
	PheWAS (0)
	philentropy (1)
	philr (182)
	PhIPData (118)
	phonTools (1)
	phosphonormalizer (66)
	phosphoricons (4)
	PhosR (134)
	phyclust (1)
	phylobase (1)
	phylocanvas (0)
	phylogram (0)
	phylolm (1)
	PhyloProfile (94)
	phyloseq (5520)
	phylosignal (1)
	phylotools (0)
	phyr (0)
	phytools (5)
	Pi (61)
	piano (490)
	pickgene (83)
	PICS (152)
	Pigengene (142)
	pillar (36)
	pim (0)
	pimeta (0)
	pinfsc50 (1)
	PING (113)
	pingr (14)
	pins (14)
	pint (26)
	pio (0)
	pipebind (1)
	pipeComp (76)
	pipeFrame (175)
	pipeR (0)
	PIPETS (40)
	Pirat (18)
	PIUMA (40)
	pivotalAbundances (1)
	pivotalPilars (1)
	pivotalPillars (1)
	pivotalReporters (1)
	pixmap (12)
	PK (0)
	pkgbuild (141)
	pkgcache (10)
	pkgconfig (3)
	pkgdepends (11)
	pkgDepTools (47)
	pkgdeptools (0)
	pkgdown (132)
	pkgKitten (0)
	pkglite (1)
	pkgload (323)
	pkgmaker (1)
	pkgpub (1)
	pkgsearch (1)
	PKI (7)
	PKNCA (0)
	PKPDdatasets (1)
	PKPDmodels (1)
	PKreport (1)
	planet (216)
	planttfhunter (85)
	plasmut (53)
	plateCore (33)
	plethy (38)
	plgem (147)
	plier (145)
	plm (1)
	PLNmodels (1)
	PloGO2 (54)
	plogr (2)
	plot3D (3)
	plot3Drgl (0)
	plotfunctions (1)
	plotgardener (327)
	plotGrouper (68)
	plotly (117)
	plotlyGeoAssets (0)
	plotmm (0)
	plotmo (2)
	plotrix (12)
	plotROC (1)
	PLPE (94)
	plpe (0)
	plrs (27)
	pls (3)
	PLSDAbatch (58)
	plumber (19)
	plw (38)
	plyinteractions (71)
	plyr (111)
	plyranges (1247)
	plyxp (6)
	PMA (0)
	pmartR (1)
	PMCMRplus (3)
	pmforest (1)
	pmm (79)
	pmml (0)
	pmp (128)
	pmparams (1)
	pmplots (1)
	pmtables (1)
	pmxTools (0)
	png (40)
	PoDCall (63)
	podkat (92)
	pogos (121)
	poibin (1)
	poilog (1)
	pointblank (1)
	PoissonSeq (0)
	poLCA (0)
	polspline (3)
	Polychrome (0)
	polyclip (96)
	polycor (0)
	polyCub (1)
	polyester (132)
	Polyfit (25)
	polylabelr (1)
	polynom (3)
	PolynomF (1)
	polysat (0)
	PolySTest (14)
	POMA (184)
	pool (11)
	poolfstat (0)
	poorman (1)
	PopED (0)
	poppr (1)
	PossibilityCurves (1)
	POST (14)
	posterior (13)
	PoTRA (13)
	PowerExplorer (12)

	poweRlaw (9)
	powerTCR (333)
	PowerTOST (1)
	POWSC (81)
	powsimR (1)
	ppcor (1)
	ppcseq (72)
	PPInfer (231)
	ppiStats (45)
	pqsfinder (124)
	prabclus (2)
	pracma (25)
	prada (47)
	praise (1)
	pram (79)
	praznik (1)
	preAnomalyDetectionCredLife (1)
	prebs (103)
	PreciseSums (1)
	preciseTAD (82)
	PrecisionTrialDrawer (14)
	preColours (1)
	precommit (1)
	precrec (1)
	PREDA (117)
	prediction (1)
	predictionet (33)
	predictmeans (1)
	predint (0)
	preGgplot2 (1)
	PReMiuM (0)
	preproc.iquizoo (1)
	preprocessCore (14231)
	preprocesscore (0)
	PreprocessCore (0)
	preprocessorCore (1)
	PresenceAbsence (0)
	preseqR (1)
	presser (1)
	presto (1)
	prestor (1)
	prettycode (0)
	prettydoc (1)
	prettymapr (1)
	prettyunits (141)
	priceR (2)
	primeviewcdf (2)
	primeviewprobe (2)
	primirTSS (82)
	PrInCE (79)
	princurve (1)
	printr (0)
	prioritylasso (1)
	prismatic (7)
	PRISMselector (1)
	Prize (18)
	proActiv (87)
	probably (1)
	proBAMr (82)
	proBatch (29)
	pROC (38)
	PROcess (125)
	processCore (0)
	processx (274)
	procoil (93)
	ProCoNA (25)
	procs (1)
	proDA (281)
	prodlim (40)
	productplots (0)
	proffer (1)
	proFIA (24)
	profile (0)
	profileModel (0)
	profileplyr (239)
	profileScoreDist (76)
	profmem (0)
	profvis (38)
	progeny (480)
	ProgMan (1)
	progress (119)
	progressr (39)
	proj (0)
	PROJ (5)
	proj4 (12)
	ProjecTILs (1)
	projectR (128)
	projpred (1)
	pRoloc (287)
	pRolocdata (9)
	pRolocGUI (117)
	PROMISE (139)
	promise (1)
	promises (239)
	prompt (1)
	prompter (2)
	PRONE (8)
	PropCIs (1)
	PROPER (118)
	properties (1)
	propr (1)
	PROPS (75)
	PROreg (0)
	PROscorer (1)
	PROscorerTools (1)
	Prostar (105)
	prostar (0)
	prot2D (23)
	proteasy (25)
	proteinProfiles (77)
	ProteoDisco (72)
	ProteomicsAnnotationHubData (20)
	proteomixr (1)
	ProteoMM (97)
	proteoQC (21)
	protGear (74)
	ProtGenerics (11837)
	proto (1)
	protoarrayr (1)
	protolite (1)
	protr (11)
	protti (1)
	protViz (1)
	proxy (2)
	proxyC (2)
	PRROC (5)
	pryr (11)
	ps (334)
	PSCBS (6)
	pscl (2)
	PSEA (48)
	psichomics (94)
	PSICQUIC (38)
	PSMatch (1453)
	PsNR (0)
	pspearman (1)
	pspline (2)
	psych (129)
	psychometric (5)
	psychonetrics (1)
	psychotools (0)
	psychotree (0)
	psychTools (1)
	psygenet2r (105)
	ptairMS (68)
	ptw (1)
	PubChemR (1)
	Publish (1)
	PubScore (9)
	PullReadAnalysisData (0)
	pulsar (1)
	pulsedSilac (10)
	puma (141)
	PupillometryR (1)
	PureCN (182)
	purr (0)
	purrr (91)
	purrrlyr (0)
	pvac (95)
	pvca (281)
	pvclust (0)
	Pviz (104)
	pwalign (3420)
	PWMEnrich (225)
	pwOmics (200)
	pwr (0)
	pwrEWAS (21)
	PwrGSD (1)
	pxr (0)
	pyinit (0)
	pzfx (0)

Q

	qap (12)
	qbaDatabase (1)
	qcc (0)
	qckitfastq (86)
	qcmetrics (135)
	qcNvs (0)
	QCvis (1)
	qdapRegex (1)
	qdapTools (1)
	QDNAseq (391)
	QDNAseq.hg19 (1)
	QDNAseq.mm10 (0)
	QFeatures (2448)
	qgam (0)
	qgraph (1)
	qicharts (1)
	qiimer (1)
	qlcMatrix (17)
	qmtools (73)
	QNB (1)
	qpcR (0)
	qpcrNorm (107)
	qpdf (3)

	qpgraph (211)
	qPLEXanalyzer (89)
	qqconf (9)
	qqman (3)
	qqplotr (1)
	qrcode (1)
	qreport (1)
	qrng (0)
	qrnn (1)
	qrqc (41)
	qs (10)
	QSARdata (0)
	qsea (93)
	qsmooth (197)
	QSutils (129)
	qsvaR (216)
	qtl (2)
	qtl2 (2)
	QTLExperiment (59)
	Qtlizer (71)
	quadprog (1)
	QUALIFIER (34)
	qualifier (1)

	qualityTools (1)
	qualpalr (0)
	qualtRics (1)
	quantable (1)
	quanteda (1)
	quantiseqr (506)
	quantmod (11)
	QuantPsyc (1)
	quantreg (71)
	quantro (356)
	quantsmooth (656)
	quarto (7)
	QuartPAC (85)
	QuasR (370)
	QuaternaryProd (90)
	QUBIC (160)
	qubiGenestack (1)
	questionr (1)
	QuickJSR (6)
	qusage (417)
	qvalue (18126)
	qvcalc (0)
	qwraps2 (1)

R

	r (1)
	R (1)
	r-library-rags-stash (1)
	r-limma (1)
	R.cache (1)
	R.devices (8)
	R.filesets (8)
	R.huge (7)
	R.matlab (1)
	R.methodsS3 (5)
	R.oo (64)
	R.rsp (1)
	R.utils (91)
	R2admb (1)
	r2d2 (0)
	r2d3 (1)
	R2GUESS (1)
	R2HTML (1)
	R2jags (1)
	R2OpenBUGS (0)
	r2r (1)
	r2rtf (1)
	R2wd (0)
	R2WinBUGS (1)
	R3CPET (84)
	r3Cseq (116)
	r3dmol (1)
	R453Plus1Toolbox (113)
	R4RNA (667)
	R6 (11)
	rAccess (1)
	radarchart (0)
	radiant (1)
	radiant.data (1)
	radiant.model (1)
	radiator (0)
	RadioGx (84)
	raer (57)
	ragg (240)
	RaggedExperiment (883)
	RAIDS (62)
	rain (119)
	rainbow (9)
	rama (32)
	rAmCharts (1)
	RamiGO (23)
	ramr (67)
	ramwas (148)
	randomcoloR (6)
	randomcolor (1)
	RandomFields (0)
	RandomFieldsUtils (0)
	randomForest (21)
	randomForestSRC (2)
	randomizr (0)
	randomNames (0)
	RandomWalkRestartMH (86)
	randPack (88)
	randRotation (63)
	randtests (1)
	randtoolbox (1)
	rangeModelMetadata (1)
	ranger (16)
	RankAggreg (1)
	RankProd (316)
	rankprod (1)
	RANN (10)
	rapiclient (1)
	RApiDatetime (1)
	rapidjsonr (1)
	rapidoc (0)
	RApiSerialize (9)
	rappdirs (3)
	rapportools (1)
	RAREsim (59)
	RareVariantVis (92)
	Rariant (34)
	rARPACK (5)
	Rarr (157)
	raster (15)
	rasterVis (1)
	ratelimitr (0)
	RAthena (11)
	rattle (1)
	rawDiag (46)
	rawrr (226)
	rayimage (1)
	rayrender (1)
	rayvertex (1)
	rbacon (1)
	RbcBook1 (141)
	Rbec (78)
	rbenchmark (0)
	RBesT (1)
	RBGL (9415)
	rbgl (1)
	rbibutils (38)
	rbioapi (2)
	RBioFormats (174)
	RBioinf (103)
	rbioinfcookbook (1)
	rBiopaxParser (192)
	rbiopaxparser (1)
	rBLAST (97)
	RBM (84)
	rbmi (0)
	rbokeh (1)
	Rbowtie (517)
	Rbowtie2 (310)
	rbsurv (109)
	Rbwa (112)
	Rcade (41)
	Rcapture (1)
	rcartocolor (0)
	RCAS (168)
	RCASPAR (76)
	RccpTOML (1)
	rcdk (11)
	RCdk (0)
	rcdklibs (11)
	rcellminer (101)
	rCGH (143)
	Rcgmin (1)
	rCharts (1)
	Rchemcpp (26)
	Rchoice (0)
	RchyOptimyx (31)
	RCircos (0)
	RcisTarget (963)
	RClickhouse (0)
	rclipboard (7)
	RCM (88)
	rcmdcheck (2)
	Rcmdr (1)
	RcmdrMisc (1)
	Rcollectl (37)
	RColorBrewer (12)
	rcompanion (1)
	rcorpora (1)
	Rcpi (148)
	Rcpp (360)
	rcpp (1)
	RcppAlgos (1)
	RcppAnnoy (39)
	RcppArmadillo (228)
	RcppCCTZ (1)
	RcppClassic (1)
	RcppDate (1)
	RcppDE (0)
	RcppDist (0)
	RcppEigen (183)
	RcppEnsmallen (1)
	RcppGSL (3)
	RcppHNSW (21)
	RcppML (6)
	RcppNumerical (1)
	RcppParallel (24)
	RcppProgress (1)
	RcppRoll (6)
	RcppSimdJson (33)
	RcppSpdlog (1)
	RcppThread (3)
	RcppTOML (16)
	RcppZiggurat (6)
	Rcsdp (0)
	RCSL (65)
	RCurl (178)
	RCurl.back (0)
	Rcwl (120)
	RcwlPipelines (120)
	RCX (105)
	RCy3 (951)
	RCyjs (91)
	RCytoscape (25)
	Rd2roxygen (0)
	rda (0)
	RDAVIDWebService (54)
	Rdbi (12)
	RdbiPgSQL (10)
	RDBS.plot (1)
	RDCOMClient (1)
	rdd (0)
	rdflib (1)
	rDGIdb (90)
	Rdimtools (0)
	Rdisop (457)
	rdocx (0)
	Rdpack (41)
	rdrop2 (1)
	RDRToolbox (163)
	Rdsdp (0)
	reactable (2)
	reactlog (0)
	reactome.db (10)
	ReactomeContentService4R (125)
	ReactomeGraph4R (56)
	ReactomeGSA (243)
	ReactomePA (2625)
	reactR (50)
	readat (13)
	readbitmap (0)
	readBrukerFlexData (1)
	reader (1)
	readJDX (1)
	readODS (1)
	ReadqPCR (226)
	readr (113)
	readstata13 (1)
	readxl (56)
	rearrr (1)
	reb (34)
	REBayes (0)
	REBET (72)
	rebook (137)
	receptLoss (64)
	recipes (55)
	reclin (0)
	recommenderlab (1)
	reconsi (72)
	recosystem (1)
	recount (415)
	recount3 (315)

	recountmethylation (94)
	recoup (83)
	reda (0)
	REddyProc (0)
	RedeR (349)
	RedisParam (62)
	redland (1)
	rEDM (1)
	redoc (0)
	REDseq (124)
	redux (1)
	RefFreeEWAS (1)
	refinr (1)
	RefManageR (1)
	RefNet (25)
	RefPlus (61)
	refund (1)
	RegEnrich (122)
	reghelper (1)
	regionalpcs (74)
	RegionalST (63)
	regioneR (1990)
	regioneReloaded (74)
	regionReport (159)
	registry (1)
	RegParallel (0)
	regress (1)
	regsplice (77)
	regutools (94)
	relaimpo (1)
	relations (1)
	reldist (8)
	relimp (0)
	relsurv (1)
	remaCor (7)
	rematch (74)
	rematch2 (1)
	remotes (144)
	REMP (94)
	renderthis (1)
	rentrez (0)
	renv (141)
	Repitools (315)
	report (3)
	reporter (1)
	ReporteRs (1)
	ReporteRsjars (1)
	reporting (1)
	ReportingTools (663)
	reposTools (2)
	repr (5)
	reprex (77)
	repurrrsive (0)
	RepViz (118)
	ReQON (56)
	reReg (0)
	resample (0)
	reshape (2)
	reshape2 (3)
	ResidualMatrix (3727)
	RESOLVE (70)
	Resourcerer (13)
	ResourceSelection (1)
	restfulr (8)
	restfulSE (169)
	reticulate (86)
	retrofit (57)
	ReUseData (71)
	revealgenomics (1)
	RevGadgets (1)
	review (1)
	rex (2)
	rexposome (129)
	rfaRm (67)
	Rfast (15)
	Rfast2 (1)
	Rfastp (158)
	rfcdmin (3)
	rfishbase (1)
	Rfit (1)
	rflowcyt (13)
	RFOC (8)
	rfPred (89)
	rGADEM (327)
	RGalaxy (33)
	rgbif (1)
	RGCCA (0)
	rgdal (19)
	rGenomeTracks (68)
	rgenoud (1)
	rgeoda (0)
	rgeos (17)
	rgexf (1)
	Rgin (14)
	rgl (3)
	Rglpk (1)
	rglwidget (1)
	RGMQL (64)
	rgnparser (1)
	RgnTX (65)
	RgoogleMaps (5)
	rgoslin (108)
	rgr (1)
	RGraph2js (81)
	Rgraphviz (9628)
	rgraphviz (2)
	rGREAT (678)
	RGSEA (94)
	rgsepd (82)
	rhandsontable (3)
	rhdf5 (20345)
	Rhdf5 (1)
	rhdf5client (171)
	rhdf5filters (19654)
	Rhdf5lib (23974)
	rhino (17)
	rhinotypeR (8)
	Rhisat2 (243)
	RhpcBLASctl (2)
	Rhtslib (25015)
	rhtslib (2)
	rhub (3)
	rHVDM (32)
	rhvdm (0)
	RiboCrypt (72)
	RiboDiPA (71)
	RiboProfiling (116)
	ribor (73)
	riboSeq (0)
	riboSeqR (92)
	ribosomeProfilingQC (103)
	rice (1)
	RIdeogram (0)
	ridigbio (1)
	riem (1)
	rifi (67)
	rifiComparative (61)
	RImmPort (64)
	Ringo (256)
	RInside (0)
	Rintact (6)
	rintcal (1)
	rintrojs (2)
	rio (19)
	RIPAT (27)
	RIPSeeker (39)
	Risa (193)
	RISCA (1)
	riskmetric (1)
	riskRegression (1)
	RITAN (96)
	ritis (0)
	RItools (2)
	RIVER (78)
	riverplot (1)
	rj (1)
	rj.gd (1)
	rjags (2)
	rJava (124)
	RJDBC (1)
	RJMCMCNucleosomes (85)
	rjson (37)
	rjsoncons (1)
	RJSONIO (16)
	Rlab (0)
	Rlabkey (1)
	rlang (487)
	rlaR (1)
	RLassoCox (73)
	rle (0)
	rlecuyer (1)
	rlemon (0)
	rliger (1)
	rlist (1)
	rlistings (2)
	RLMM (88)
	RLRsim (0)
	RLSeq (32)
	rly (0)
	RMAGEML (10)
	Rmagic (1)
	Rmagpie (104)
	RMAPPER (10)
	rmapshaper (1)
	RMariaDB (21)
	rmarkdown (373)
	RMassBank (134)
	rmassbank (1)
	rMAT (32)
	rmatio (0)
	rmcfs (1)
	rmcorr (1)
	rmdformats (1)
	rmelting (79)
	rmeta (1)
	rminer (0)
	rmint.sdtm (1)
	rmio (0)
	RmiR (34)
	rMisbeta (1)
	Rmisc (1)
	Rmmquant (80)
	Rmpfr (14)
	Rmpi (1)
	rms (4)
	rmsb (0)
	rmspc (76)
	RMTstat (0)
	rmutil (1)
	rMVP (2)
	RMySQL (4)
	RNAAgeCalc (88)
	RNAdecay (60)
	rnaEditr (81)
	RNAi (1)
	RNAinteract (98)
	RNAither (43)
	RNAmodR (129)
	RNAmodR.AlkAnilineSeq (82)
	RNAmodR.Data (1)
	RNAmodR.ML (77)
	RNAmodR.RiboMethSeq (84)

	RNAprobR (18)
	RNAsense (66)
	rnaseqcomp (91)
	RNAseqCovarImpute (55)
	rnaseqGene (1)
	RnaSeqGeneEdgeRQL (3)
	rnaSeqMap (35)
	RNASeqPower (183)
	RNAseqQC (1)
	RNASeqR (14)
	RnaSeqSampleSize (121)
	rnaturalearth (2)
	rnaturalearthdata (1)
	RnBeads (313)
	RnBeads.hg19 (6)
	RnBeads.hg38 (6)
	RnBeads.mm10 (6)
	RnBeads.mm9 (6)
	RnBeads.rn5 (6)
	rncl (1)
	RNetCDF (3)
	RNeXML (0)
	rngtools (2)
	rngWELL (1)
	RNifti (1)
	Rnits (84)
	rnoaa (1)
	RNOmni (1)
	roak (1)
	roar (95)
	roastgsa (57)
	robfilter (2)
	RobinCar (1)
	RobStatTM (0)
	robumeta (0)
	robust (17)
	robustbase (35)
	robustlmm (0)
	ROC (1142)
	ROCit (1)
	ROCpAI (60)
	ROCR (2)
	RODBC (3)
	ROI (1)
	ROI.plugin.glpk (1)
	ROI.plugin.lpsolve (1)
	RolDE (72)
	Roleswitch (31)
	roleswitch (1)
	Rolexa (22)
	roll (2)
	rols (497)
	roma (2)
	ROntoTools (223)
	Rook (0)
	rootSolve (10)
	ropls (1241)
	roptim (1)
	ROracle (1)
	ROSE (1)
	ROSeq (76)
	rosettR (0)
	rotl (2)
	ROTS (235)
	round (0)
	roxygen (1)
	roxygen2 (173)
	RPA (140)
	rpact (1)
	rpart (66)
	rpart.plot (1)
	RPEGLMEN (0)
	RPEIF (0)
	RPESE (0)
	rpf (1)
	RPMG (8)
	RPostgres (94)
	RPostgreSQL (4)
	RpostgreSQL (1)
	RPresto (1)
	rprimer (88)
	rprintf (0)
	rprojroot (133)
	rpromis (1)
	RProtoBuf (1)
	RProtoBufLib (2721)
	rpsftm (1)
	RpsiXML (45)
	RPtests (1)
	RPushbullet (0)
	rpx (314)
	Rqc (286)
	rqdatatable (1)
	rqt (65)
	rqubic (119)
	rr2 (0)
	rrapply (1)
	rrBLUP (1)
	rrcov (22)
	rrcovNA (1)
	rRDP (96)
	Rredland (7)
	rredlist (0)
	RRHO (113)
	RRPP (1)
	rrsq (1)
	rrvgo (577)
	rsample (20)
	Rsamtools (23906)
	rsamtools (1)
	rsatscan (1)
	rsbml (180)
	RSclient (1)
	rsconnect (33)
	rScudo (75)
	RSEIS (8)
	RSelenium (2)
	rsemmed (62)
	RSeqAn (116)
	Rserve (1)
	rSFFreader (24)
	RSiena (1)
	RSKC (1)
	rslurm (0)
	rsm (0)
	Rsmlx (0)
	Rsmlx.1 (0)
	Rsmlx.2 (0)
	RSNNS (0)
	RSNPper (9)
	rsnps (0)
	Rsolnp (1)
	rsparkling (1)
	rsparse (1)
	RSpectra (60)
	Rspectra (1)
	rspm (1)
	RSQLite (201)
	Rssa (0)
	RsSimulx (0)
	RsSimulx.1 (0)
	rstan (15)
	rstanarm (1)
	rstanemax (1)
	rstantools (13)
	rstatix (20)
	rstpm2 (1)
	rstudio (1)
	rstudioapi (138)
	Rsubread (2277)
	rsvd (7)
	rsvg (3)
	RSVSim (99)
	rSWeeP (74)
	Rsymphony (0)
	rtables (6)
	rTANDEM (31)
	RTCA (95)
	RTCGA (545)
	RTCGAToolbox (534)
	rtdists (0)
	rtf (1)
	rticles (1)
	rtkore (1)
	RTN (210)
	RTNduals (109)
	RTNsurvival (85)
	RTools4TB (6)
	RTopper (97)
	Rtpca (83)
	rtracklayer (20992)
	Rtreemix (103)
	rTRM (200)
	rTRMui (92)
	Rtsne (32)
	Rttf2pt1 (1)
	rtweet (6)
	rubasic (1)
	Ruchardet (0)
	rugarch (3)
	runibic (93)
	RUnit (11)
	runjags (1)
	runner (3)
	runonce (0)
	Runuran (0)
	ruODK (1)
	rusinglecell (1)
	Ruuid (12)
	ruv (1)
	RUVcorr (86)
	RUVnormalize (97)
	RUVSeq (934)
	RUVseq (0)
	RVAideMemoire (1)
	Rvcg (0)
	rvcheck (3)
	RVenn (0)
	RVerbalExpressions (1)
	rversions (20)
	rvertnet (1)
	rvest (167)
	rvg (2)
	Rvisdiff (59)
	Rvmmin (2)
	RVS (75)
	RVtests (0)
	Rwave (6)
	rwdisplay (1)
	RWebServices (16)
	RWiener (0)
	rWikiPathways (410)
	rworldmap (1)
	RxODE (0)
	rxode2 (1)
	rxode2et (1)
	rxode2ll (1)
	rxode2parse (1)
	rxode2random (1)
	Ryacas (1)
	rzmq (1)

S

	s2 (41)
	s3fs (1)
	S4Arrays (39423)
	S4Vectors (56000)
	s4vectors (0)
	S4vectors (1)
	saemix (0)
	saeRobust (1)
	safe (695)
	safeBinaryRegression (1)
	safetyCharts (1)
	safetyData (0)
	safetyexploreR (0)
	safetyMarginCalculation (0)
	SAGElyzer (6)
	sagenhaft (92)
	SAGx (46)
	SAIGEgds (112)
	samExploreR (14)
	sampleClassifier (88)
	sampleSelection (0)
	sampling (1)
	samr (5)
	SamSPECTRAL (184)
	sandwich (15)
	sangeranalyseR (207)
	sangerseqR (915)
	SANTA (78)
	santoku (1)
	sapFinder (29)
	saps (8)
	SARC (58)
	sarks (68)
	sas7bdat (1)
	saseR (47)
	sasLM (1)
	SASmixed (0)
	sass (301)
	sassy (1)
	SASxport (1)
	satchel (1)
	satellite (3)
	satuRn (294)
	SAVER (1)
	savR (31)
	SBGNview (218)
	SBGNview.data (1)
	sbgr (6)
	SBMLR (102)
	SC3 (375)
	sc3 (0)
	scagnostics (0)
	Scale4C (87)
	ScaledMatrix (12529)
	scales (127)
	scAlign (18)
	scalreg (0)
	scam (0)
	SCAN.UPC (173)
	scanMiR (106)
	scanMiRApp (70)
	scAnnotatR (221)
	SCANVIS (82)
	SCArray (104)
	SCArray.sat (71)
	SCATE (62)
	scater (7294)
	scatterD3 (1)
	scatterHatch (63)
	scattermore (14)
	scatterpie (40)
	scatterplot3d (10)
	scBFA (82)
	SCBN (103)
	scBubbletree (74)
	scCB2 (80)
	scClassifR (5)
	scClassify (135)
	scclusteval (0)
	sccomp (113)
	sccore (0)
	sccs (0)
	scCustomize (1)
	scda (1)
	scda.2021 (0)
	scda.2022 (0)
	scDataviz (98)
	scDblFinder (1548)
	ScDblFinder (0)
	scDC (0)
	scDD (154)
	scDDboost (69)
	scde (399)
	scDesign3 (79)
	scDiagnostics (14)
	scDotPlot (22)
	scds (511)
	SCENIC (1)
	sceptre (1)
	SCFA (66)
	scFeatureFilter (73)
	scFeatures (80)
	scfind (12)
	scGate (1)
	scGPS (101)
	scGSVA (1)
	schex (233)
	schoolmath (1)
	scHOT (80)
	scico (1)
	scidb (0)
	scider (64)
	scifer (73)
	Scillus (0)
	scImpute (1)
	ScISI (43)
	scistreer (8)
	scJonas (1)
	scLinear (0)
	scMAGeCK (9)
	scmap (231)
	scMerge (569)
	scMET (63)
	scmeth (90)
	scMitoMut (40)
	scMultiSim (40)
	SCnorm (130)
	scone (129)
	Sconify (78)
	scooter (1)
	SCOPE (84)
	SCopeLoomR (1)
	scoreInvHap (85)
	scoringRules (1)
	scoup (6)
	scp (225)
	SCP (1)
	scPCA (105)
	scPipe (152)
	scplot (1)
	scran (4872)
	scrapper (11)
	scReClassify (78)
	scRecover (75)
	screenCounter (60)
	ScreenR (61)
	scRepertoire (522)
	screpertoire (1)
	scrime (5)
	scRNAseq (1)
	scRNASeq.spatial (0)
	scRNAseqApp (79)
	scruff (91)
	scry (258)
	scrypt (5)
	scs (1)
	scShapes (62)
	scsR (28)
	scTensor (137)
	scTGIF (242)
	scTHI (64)
	SCtools (1)
	sctransform (14)
	scTreeViz (70)
	sctrnasform (1)
	scuttle (9421)
	scviewer (0)
	scviR (63)
	sda (1)
	SDAMS (81)
	sdmpredictors (1)
	SDMTools (1)
	sdpR (1)
	sdtmchecks (1)
	seahtrue (16)
	sechm (174)
	secretbase (5)
	secrets (1)
	see (3)
	seewave (0)
	segmented (30)
	segmenter (85)
	segmentSeq (113)
	selectKSigs (70)
	selectr (1)
	SELEX (93)
	sem (0)
	SemDist (80)
	semEff (0)
	semisup (73)
	SemSim (4)
	semsim (0)
	semTools (0)
	sen2r (0)
	sendmailR (1)
	sensemakr (1)
	sensitivity (1)
	sensobol (1)
	SEPA (14)
	SEPIRA (26)
	seq.hotSPOT (54)
	seq2pathway (222)
	seqArchR (93)
	seqArchRplus (66)
	SeqArray (954)
	seqArray (1)
	seqbias (82)
	seqCAT (88)
	seqCNA (50)
	seqcombo (76)
	SeqGate (72)
	SeqGSEA (249)
	seqinr (15)
	seqLogo (3927)
	seqlogo (0)
	seqmagick (1)
	seqminer (11)
	Seqnames (0)
	seqPattern (783)
	seqplots (27)
	seqsetvis (102)
	SeqSQC (191)
	seqTools (143)
	sequenza (0)
	SeqVarTools (458)
	seriation (32)
	SeruatObject (1)
	servr (7)
	sesame (896)
	sesameData (1)
	sessioninfo (3)
	set (1)
	set6 (1)
	SEtools (233)
	setRNG (1)
	sets (1)
	settings (0)
	seurat (1)
	Seurat (52)
	SeuratData (1)
	SeuratDisk (1)
	SeuratObject (39)
	SeuratWrapper (1)
	SeuratWrappers (1)
	sevenbridges (90)
	sevenC (74)
	sf (41)
	sfheaders (21)
	sfsmisc (4)
	sftime (1)
	SGCP (195)
	sgeostat (0)
	SGP (0)
	SGSeq (347)
	shadowtext (42)
	shape (62)
	shapefiles (0)

	shapes (0)
	shapr (0)
	SharedObject (157)
	ShatterSeek (0)
	SHELF (0)
	shinipsum (1)
	shiny (305)
	shiny.fluent (2)
	shiny.gosling (50)
	shiny.react (3)
	shiny.router (1)
	shiny.semantic (1)
	shiny.telemetry (1)
	shinyAce (1)
	shinyalert (14)
	shinyauth (0)
	shinyauthr (1)
	shinyBS (7)
	shinybusy (17)
	shinycssloaders (11)
	shinydashboard (3)
	shinydashboardPlus (17)
	shinydisconnect (3)
	shinyEffects (0)
	shinyepico (87)
	shinyFeedback (0)
	shinyfeedback (0)
	shinyFiles (11)
	shinyglide (0)
	shinyhelper (6)
	ShinyItemAnalysis (5)
	shinyjqui (1)
	shinyjs (4)
	shinylive (0)
	shinyloadtest (1)
	shinyLP (1)
	shinymanager (3)
	shinyMatrix (0)
	shinyMethyl (139)
	shinyMobile (1)
	shinypanel (6)
	shinyscreenshot (2)
	shinySelect (0)
	shinystan (1)
	shinyTANDEM (26)
	shinytest (1)
	shinytest2 (27)
	shinythemes (1)
	shinytoastr (1)
	shinyTree (2)
	Shinyusagelogr (1)
	shinyvalidate (43)
	shinyWidgets (104)
	ShortRead (6324)
	shortread (0)
	showimage (0)
	showtext (3)
	showtextdb (0)
	SIAMCAT (147)
	SICtools (73)
	SID (1)
	sidap (0)
	sigaR (30)
	SigCheck (86)
	sigclust (1)
	sigFeature (262)
	Sigfried (1)
	SigFuge (93)
	siggenes (3464)
	sights (83)
	Signac (15)
	signac (1)
	signal (1)
	signature.tools.lib (0)
	signature.tools.lib.back (0)
	signature.tools.lib.v2.1 (0)
	signature.tools.lib.v2.1.2 (0)
	signatureSearch (241)
	signeR (100)
	signet (11)
	signifinder (63)
	SignifReg (0)
	sigPathway (53)
	sigpathway (1)
	SigProfilerExtractorR (1)
	SigsPack (70)
	sigsquared (82)
	SIM (100)
	SIMAT (86)
	SimBindProfiles (62)
	SimBu (167)
	SimBU (1)
	SimComp (0)
	SIMD (73)
	SimDesign (1)
	simex (0)
	SimFFPE (67)
	similaRpeak (89)
	SimInf (1)
	SIMLR (256)
	simmer (1)
	SimMultiCorrData (1)
	simona (123)
	simpar (1)
	simPIC (40)
	simpleaffy (108)
	simplermarkdown (0)
	simpleSeg (86)
	simpleSingleCell (0)
	simplifyEnrichment (883)
	simputation (0)
	simr (1)
	simresults (1)
	SimSeq (0)
	simsurv (0)
	simul (1)
	simulatorAPMS (8)
	simulatorZ (23)
	sincell (86)
	single (46)
	SingleCellAlleleExperiment (54)
	SingleCellExperiment (15803)
	SingleCelLExperiment (0)
	SingleCellSignalR (260)
	singleCellTK (332)
	SingleMoleculeFootprinting (79)
	SingleR (4260)
	singleR (1)
	SingleRBook (3)
	singscore (1539)
	SiPSiC (65)
	sirnakit (1)
	SIS (0)
	siscreener (0)
	SISPA (29)
	sitadela (69)
	sitePath (78)
	sitmo (8)
	sizepower (98)
	SJava (13)
	sjlabelled (1)
	sjmisc (1)
	sjPlot (1)
	sjstats (1)
	SKAT (11)
	sketchR (55)
	SkewHyperbolic (2)
	skewr (76)
	skewt (0)
	skimr (1)
	skmeans (0)
	slackr (1)
	slalom (165)
	slam (8)
	sleuth (1)
	SLGI (44)
	slickR (0)
	slider (17)
	slingshot (1495)
	slinky (15)
	sloop (0)
	slopeR (1)
	SLqPCR (99)
	sm (1)
	smacof (1)
	SMAD (68)
	SMAP (57)
	smartdata (0)
	SmartEDA (1)
	smartid (53)
	smcfcs (0)
	smfishHmrf (0)
	SMITE (82)
	smldesign (1)
	smooth (1)
	smoothclust (45)
	smoother (1)
	smoothHR (0)
	smotefamily (1)
	SMVar (7)
	sn (13)
	sna (2)
	SNAData (2)
	SNAGEE (89)
	snakecase (15)
	SnapATAC (0)
	snapCGH (112)
	snapcount (78)
	snifter (147)
	snm (185)
	snow (8)
	SnowballC (4)
	snowfall (1)
	snpar (1)
	SNPchip (42)
	SNPediaR (70)
	snpgds (1)
	SNPhood (86)
	SNPlocs.Hsapiens.dbSNP151.GRCh38 (0)
	snpMatrix (15)
	snpmatrix (1)
	SNPRelate (1731)
	snpStats (2195)
	SOAR (0)
	sodium (10)
	softImpute (1)
	soGGi (370)
	soilDB (1)
	soiltexture (1)
	sojourner (18)
	solrium (0)
	solvebio (1)
	som (1)
	SomaDataIO (3)
	SomatiCA (20)
	SomaticSignatures (200)
	SomaVarDB (0)
	SOMbrero (1)
	sommer (1)
	SOMNiBUS (70)
	sortable (5)
	sos (1)
	sosta (0)
	soundecology (0)
	SoupX (1)
	sourcetools (31)
	sp (85)
	spacefillr (1)
	SpaceMarkers (38)
	SpacePAC (129)
	spacetime (3)
	spacexr (1)
	SPACox (0)
	spacrt (1)
	spade (21)
	spam (7)
	spam64 (0)
	spaMM (0)
	Spaniel (100)
	SpaNorm (8)
	sparkline (0)
	sparklyr (11)
	SPARQL (1)
	sparr (1)
	sparrow (295)
	SparseArray (39141)
	sparsebn (1)
	sparsebnUtils (1)
	sparseDOSSA (33)
	SparseGrid (0)
	SparseM (56)
	sparseMatrixStats (15707)
	sparsematrixstats (2)
	sparsenetgls (66)
	sparsepca (0)
	SparseSignatures (81)
	sparsesvd (16)

	spaSim (74)
	spatial (34)
	SpatialCPie (94)
	spatialDE (122)
	SpatialDecon (220)
	SpatialEpi (1)
	SpatialExperiment (3591)
	spatialexperiment (1)
	spatialFDA (0)
	SpatialFeatureExperiment (177)
	spatialHeatmap (259)
	SpatialOmicsOverlay (86)
	spatialreg (0)
	spatialSimGP (6)
	spatstat (5)
	spatstat.core (13)
	spatstat.data (31)
	spatstat.explore (38)
	spatstat.geom (42)
	spatstat.linnet (5)
	spatstat.model (5)
	spatstat.random (40)
	spatstat.sparse (25)
	spatstat.univar (3)
	spatstat.utils (31)
	spatsurv (1)
	spatzie (65)
	spd (0)
	spData (9)
	spdata (1)
	spdep (4)
	spec (0)
	speckle (214)
	specL (87)
	SpeCond (107)
	spectacles (0)
	Spectra (2005)
	SpectralTAD (99)
	SpectraQL (11)
	speedglm (0)
	SPEI (1)
	spelling (3)
	SPEM (116)
	spgs (0)
	SPIA (652)
	SPIAT (134)
	spicyR (202)
	SpidermiR (69)
	spikeLI (79)
	spiky (64)
	spillR (46)
	spkTools (90)
	splancs (10)
	splatter (504)
	splice2neo (1)
	splicegear (33)
	spliceR (27)
	spliceSites (27)
	SpliceWiz (133)
	SplicingFactory (62)
	SplicingGraphs (122)
	SplineDV (1)
	splines (1)
	splines2 (1)
	splineTCDiffExpr (1)
	splineTimeR (93)
	SPLINTER (84)
	splitstackshape (1)
	splitTools (1)
	splots (235)
	spls (0)
	splus2R (3)
	spocc (1)
	SPONGE (70)
	spoon (42)
	SpotClean (108)
	SPOTlight (267)
	spotSegmentation (29)
	SpotSweeper (36)
	spp (1)
	SPP (1)
	spqn (66)
	spsComps (0)
	SPsimSeq (225)
	SQLDataFrame (70)
	sqldf (1)
	SqlRender (2)
	SQUADD (50)
	squallms (16)
	SQUAREM (1)
	sRACIPE (87)
	SRAdb (468)
	sradb (1)
	sRAP (33)
	SRGnet (14)
	srnadiff (83)
	sROC (0)
	Ssa.RefSeq.db (1)
	ssanv (1)
	sscore (50)
	sscu (74)
	SSDM (1)
	sSeq (207)
	ssh (3)
	ssh.utils (0)
	ssize (129)
	sSNAPPY (201)
	SSPA (93)
	ssPATHS (66)
	ssrch (99)
	ssviz (90)
	stable (1)
	stabledist (2)
	StabMap (9)
	stabs (0)
	stacks (0)
	stageR (192)
	stam (5)
	STAN (28)
	standR (148)
	StanHeaders (18)
	staRank (83)
	StarBioTrek (49)
	stargazer (0)
	Starr (36)
	stars (8)
	starter (1)
	startup (5)
	startupmsg (1)
	StatCharrms (1)
	STATegRa (91)
	statgenGWAS (1)
	Statial (84)
	statip (1)
	statmod (2)
	statnet (0)
	statnet.common (1)
	stats (1)
	stats4 (1)
	statsExpressions (3)
	statTarget (118)
	STdeconvolve (153)
	stdmchecks (1)
	stdReg (0)
	stepNorm (96)
	stepwiseCM (25)
	stevedore (0)
	sticky (0)
	stinepack (3)
	stJoincount (79)
	stopwords (1)
	storr (0)
	strandannotate (1)
	strandCheckR (79)
	strawr (1)
	Streamer (96)
	strex (1)
	string (0)
	STRINGdb (1284)
	stringdist (20)
	stringfish (8)
	stringi (374)
	stringr (181)
	striprtf (0)
	STROMA4 (32)
	strucchange (1)
	struct (167)
	Structstrings (177)
	structToolbox (124)
	StructuralVariantAnnotation (244)
	structuralvariantannotation (1)
	stxBrain.SeuratData (1)
	styler (58)
	SubCellBarCode (80)
	subplex (1)
	subselect (0)
	subSeq (96)
	SUITOR (58)
	SummarizedBenchmark (45)
	SummarizedExperiment (39455)
	summarizedExperiment (1)
	summarytools (1)
	Summix (64)
	sunburstR (0)
	superheat (0)
	SuperLearner (1)
	superpc (0)
	supersigs (153)
	SuppDists (3)
	supraHex (486)
	surfaltr (65)
	SurfR (35)
	survClust (21)
	survcomp (1299)
	surveillance (1)
	survex (1)
	survey (5)
	survival (240)
	survivalROC (1)
	survminer (4)
	survMisc (1)
	survMS (1)
	survPen (0)
	survPresmooth (0)
	survtmle (1)
	survtype (72)
	Sushi (66)
	susieR (18)
	sva (7530)
	svaNUMT (76)
	SVAPLSseq (12)
	svaRetro (79)
	svd (1)
	svDialogs (1)
	svglite (27)
	svGUI (0)
	SVM2CRM (16)
	SVMDO (120)
	svMisc (1)
	svUnit (1)
	swagger (1)
	swamp (1)
	SWATH2stats (85)
	SwathXtend (87)
	swfdr (90)
	Swiffer (1)
	SwimR (21)
	swirl (0)
	switchBox (143)
	switchde (79)
	sybil (1)
	sybilGUROBI (1)
	sybilSBML (1)
	sylly (0)
	sylly.en (0)
	symengine (1)
	symphony (1)
	synapser (1)
	synapsis (60)
	synapter (162)
	synbreed (1)
	synergyfinder (223)
	SynExtend (76)
	synlet (78)
	SynMut (69)
	syntenet (143)
	Synth (1)
	sys (103)
	sysfonts (2)
	systemfit (0)
	systemfonts (295)
	systemPipeR (1200)
	systempiper (1)
	systemPipeRdata (0)
	systemPipeShiny (82)
	systemPipeTools (78)
	syuzhet (0)

T

	table1 (3)
	tableHTML (1)
	tableone (1)
	tables (2)
	tabulapdf (1)
	tabulizer (1)
	tabulizerjars (1)
	tadar (70)
	TADCompare (101)
	TailRank (5)
	tanggle (87)
	TAPseq (82)
	tarchetypes (6)
	target (77)
	TargetDecoy (78)
	targets (9)
	TargetScore (99)
	TargetSearch (101)
	targetsearch (0)
	TarSeqQC (26)
	taskscheduleR (1)
	TauStar (1)
	taxadb (1)
	taxize (1)
	taxonomizr (1)
	taylor (1)
	TBSignatureProfiler (87)
	TCC (242)
	TCCGUI (1)
	TCGAbiolinks (4171)
	TCGAbiolinksGUI (34)
	TCGAbiolinksGUI.data (1)
	TCGAplot (1)
	TCGAutils (829)
	tcltk (1)
	tcltk2 (1)
	tclust (1)
	TCseq (277)
	TDARACNE (34)
	TDbasedUFE (89)
	TDbasedUFEadv (72)
	TeachingDemos (2)
	teal (2)
	teal.builder (1)
	teal.builder.modules (1)
	teal.code (2)
	teal.data (3)
	teal.goshawk (1)
	teal.logger (1)
	teal.modules.clinical (1)
	teal.modules.general (1)
	teal.modules.sanofi (1)
	teal.osprey (1)
	teal.reporter (1)
	teal.slice (3)
	teal.transform (1)
	teal.widgets (1)
	TEKRABber (202)
	templater (1)
	tensor (1)
	tensorA (12)
	tensorflow (16)
	TENxIO (72)
	TENxPBMCData (1)
	tenXplore (70)
	TEQC (112)
	tergm (0)
	tern (3)
	tern.gee (3)
	tern.mmrm (2)
	tern.rbmi (1)
	ternarynet (85)
	terra (35)
	terraTCGAdata (81)
	tesseract (1)
	tester (1)
	TestGenerator (1)
	testit (0)
	testthat (296)
	texreg (2)
	text2vec (1)
	textfeatures (1)
	textrecipes (1)
	textshape (1)
	textshaping (183)
	TFARM (73)
	tfautograph (1)
	TFBSTools (3590)
	tfbstools (0)
	tfdatasets (0)
	TFEA.ChIP (99)
	TFHAZ (77)
	TFisher (1)
	TFMPvalue (7)
	tfrmt (1)
	tfruns (13)
	tfse (1)
	TFutils (100)
	tgp (1)
	tgxWebservices (0)
	TH.data (117)
	thematic (6)
	themeSanofi (1)
	themis (0)
	this.path (1)
	threejs (1)
	ThresholdROC (1)
	tibbke (1)
	tibble (37)
	tictoc (10)
	tidybayes (1)
	tidybulk (317)
	tidycensus (13)
	tidyclust (2)
	tidycmprsk (1)
	tidyCoverage (41)

	tidydr (1)
	tidyFlowCore (20)
	tidyfst (1)
	tidygraph (37)
	tidyHeatmap (1)
	tidyjson (0)
	tidylog (1)
	tidymodels (15)
	tidyomics (57)
	tidyposterior (1)
	tidypredict (1)
	tidyproject (1)
	tidyproteomics (1)
	tidyquant (1)
	tidyr (249)
	tidyrules (0)
	tidysbml (12)
	tidyselect (234)
	tidySEM (1)
	tidyseurat (1)
	tidySingleCellExperiment (230)
	tidySpatialExperiment (52)
	tidySummarizedExperiment (390)
	tidytable (1)
	tidyterra (1)
	tidytext (5)
	tidytlg (1)
	tidytof (19)
	tidytransit (1)
	tidytree (40)
	tidyTree (0)
	tidyverse (20)
	tidyvpc (1)
	tidyxl (1)
	tiff (3)
	tigre (113)
	tigris (16)
	tikzDevice (1)
	tiledb (1)
	TileDBArray (79)
	tiledbsoma (1)
	tilingArray (180)
	timechange (188)
	timecourse (117)
	timeDate (43)
	timeOmics (102)
	TimeProjection (1)
	timereg (1)
	TimerQuant (0)
	timescape (91)
	timeSeries (11)
	TimeSeriesExperiment (17)
	timetk (2)
	timevis (1)
	TimiRGeN (44)
	Timma (0)
	TIN (83)
	TINC (0)
	tinkr (0)
	tinysnapshot (0)
	tinytable (1)
	tinytest (0)
	tinytex (392)
	tippy (0)
	TiPS (1)
	tis (0)
	TissueEnrich (266)
	TitanCNA (115)
	titanic (0)
	tkrgl (0)
	tkrplot (0)
	tkWidgets (1355)
	tkwidgets (1)
	tldrm (1)
	TLMoments (1)
	tLOH (67)
	tm (5)
	tmap (1)
	tmaptools (1)
	TMB (36)
	tmcn (1)
	TMixClust (99)
	tmle (2)
	TMSig (6)
	tmvnsim (1)
	tmvtnorm (1)
	TNBC.CMS (45)
	TNO (1)
	TNRS (1)
	TnT (50)
	TOAST (438)
	toastui (8)
	tofsims (18)
	tokenizers (4)
	tokupika (0)
	tolerance (0)
	tomoda (73)
	tomoseqr (61)
	tools (1)
	toOrdinal (1)
	TOP (62)
	ToPASeq (23)
	topconfects (195)
	topdownr (99)
	topGO (3003)
	topgo (0)
	topicmodels (1)
	topr (5)
	torch (1)
	tornado (1)
	tourr (1)
	ToxicoGx (89)
	Tplyr (2)
	TPP (130)
	TPP2D (75)
	tpSVG (40)

	tracee (1)
	tracktables (164)
	trackViewer (592)
	trackviewer (0)
	tradeSeq (535)
	tradeseq (1)
	traits (1)
	TrajectoryGeometry (58)
	TrajectoryUtils (1970)
	tram (0)
	TraMineR (0)
	transcriptogramer (88)
	transcriptR (98)
	transformGamPoi (95)
	transformr (0)
	transite (81)
	translations (1)
	tRanslatome (232)
	transmogR (39)
	transomics2cytoscape (84)
	transport (1)
	TransView (88)
	TraRe (9)
	traseR (87)
	Travel (5)
	traviz (74)
	tree (0)
	TreeAndLeaf (141)
	treeclimbR (41)
	treeio (20711)
	treekoR (84)
	treemap (1)
	treemapify (1)
	treesitter.r (1)
	treespace (1)
	TreeSummarizedExperiment (1979)
	TREG (67)
	trena (30)
	TReNA (3)
	trendeval (1)
	Trendy (79)
	TRESS (110)
	triangle (1)
	tricycle (258)
	triebeard (3)
	triform (34)
	trigger (107)
	trimcluster (0)
	trio (135)
	tripack (0)
	triplex (100)
	tripr (66)
	tRNA (162)
	tRNAdbImport (140)
	tRNAscanImport (91)
	TRONCO (101)
	trtf (0)
	truncdist (0)
	truncnorm (4)
	truncreg (0)
	trust (0)
	tryCatchLog (1)
	TSAR (52)
	tsbox (1)
	TSCAN (684)
	tscR (15)
	tseries (10)
	tseriesChaos (0)
	tsfeatures (2)
	tsibble (1)
	tsibbledata (1)
	tsModel (0)
	tsna (0)
	tsne (1)
	tsoutliers (2)
	TSP (16)
	tspair (37)
	TSRchitect (19)
	TSSi (28)
	tsvio (1)
	ttdo (0)
	ttgsea (103)
	TTMap (79)
	TTR (7)
	ttservice (1)
	tufte (0)
	tune (15)
	tuneR (0)
	tuneRanger (1)
	TurboNorm (101)
	Turnover.cells.pSILAC.TMT (1)
	TVTB (91)
	twang (2)
	twangContinuous (0)
	tweeDEseq (179)
	tweedie (0)
	tweenr (33)
	twilight (144)
	twoddpcr (80)
	TwoSampleMR (0)
	twosamples (1)
	txcutr (67)
	TxDb.Hsapiens.UCSC.hg19.knownGene (5)
	TxDb.Hsapiens.UCSC.hg38.knownGene (1)
	TxDb.Mmusculus.UCSC.mm10.ensGene (0)
	TxDb.Mmusculus.UCSC.mm10.knownGene (5)
	TxDb.Mmusculus.UCSC.mm9.knownGene (0)
	txdbmaker (2255)
	tximeta (1070)
	tximport (3434)
	tximportDat (0)
	tximportData (3)
	TxRegInfra (14)
	txtq (0)
	TypeInfo (82)
	tzdb (45)

U

V

	V.PhyloMaker2 (1)
	V8 (69)
	VAExprs (65)
	validate (1)
	valr (1)
	VAM (1)
	VanillaICE (296)
	vaplot (0)
	vapour (0)
	VarCon (66)
	variables (0)
	variancePartition (968)
	VariantAnnotation (12094)
	variantannotation (1)
	VariantExperiment (65)
	VariantFiltering (118)
	VariantTools (187)
	VariantWarehouseBMS (1)
	varImp (0)
	vars (1)
	vasp (6)
	VaSP (79)
	vaultr (1)
	vbmp (123)
	VBsparsePCA (0)
	vcd (4)
	VCFArray (82)
	vcfR (1)

	vcr (0)
	vctrs (238)
	vdbR (0)
	vdiffr (2)
	VDJdive (71)
	Vega (26)
	VegaMC (90)
	vegan (26)
	vegawidget (1)
	velociraptor (157)
	velocyto.R (1)
	veloviz (64)
	vembedr (0)
	vendormetadatahelpers (0)
	venn (9)
	VennDetail (277)
	VennDiagram (1)
	venneuler (1)
	VERSO (67)
	vetiver (1)
	VGAM (16)
	VGAMextra (0)
	vhydeg (0)
	VIBER (0)
	vidger (135)
	VIM (1)
	vimp (1)
	VineCopula (0)

	vioplot (1)
	vip (1)
	viper (760)
	vipor (17)
	viridis (204)
	viridisLite (61)
	viridislite (0)
	virtualArray (12)
	visdat (1)
	ViSEAGO (140)
	VisiumIO (43)
	visNetwork (3)
	visOmopResults (1)
	visR (1)
	vissE (120)
	vistime (25)
	vitae (1)
	Voyager (174)
	vpc (0)
	VplotR (78)
	vroom (131)
	vscDebugger (1)
	vsclust (69)
	vsn (5163)
	vtpnet (105)
	vulcan (89)

W

	WA43966.shareR.3043877 (1)
	waddR (67)
	waffle (1)
	waiter (10)
	wakefield (0)
	waldo (190)
	wallace (1)
	warp (16)
	wateRmelon (864)
	wavClusteR (88)
	waved (1)
	waveslim (1)
	waveTiling (32)
	wdm (0)
	wdman (2)
	weaver (98)
	webbioc (106)
	webchem (1)
	webdriver (0)
	webfakes (1)
	WebGestaltR (1)
	webmockr (0)
	webp (1)
	webshot (25)

	webshot2 (2)
	websocket (17)
	webutils (2)
	WeightIt (2)
	weights (3)
	WeightSVM (0)
	weitrix (77)
	WES.1KG.WUGSC (1)
	wesanderson (1)
	WGCNA (12)
	WGScan (0)
	WGSmapp (1)
	whereami (0)
	whisker (26)
	whitening (0)
	whoami (1)
	widgetframe (1)
	widgetInvoke (5)
	widgetTools (1354)
	widgettools (1)
	wiggleplotr (193)
	WikidataQueryServiceR (0)
	WikidataR (0)
	WikipediR (4)

	wikitaxa (0)
	wildmeta (0)
	winboxr (1)
	withr (308)
	wk (43)
	wmtsa (1)
	worcs (1)
	wordcloud (0)
	wordcloud2 (0)
	workflowr (1)
	workflows (13)
	workflowsets (13)
	WorldFlora (1)
	worrms (2)
	wpm (77)
	wppi (50)
	wrapr (1)
	Wrench (1665)
	writexl (31)
	WriteXLS (4)
	wrMisc (1)
	WRS2 (2)

X

Y

	y2hStat (2)
	yaImpute (1)
	yaml (275)
	yamss (88)

	YAPSA (109)
	yaqcaffy (36)
	yardstick (20)
	yarn (145)

	ylab.utils (1)
	ymlthis (0)
	yspec (1)
	yulab.utils (69)

Z

	zCompositions (10)
	zeallot (0)
	zellkonverter (1394)
	zelusutils (1)
	zen4R (0)
	zenith (150)

	zFPKM (136)
	zinbwave (975)
	zingeR (1)
	zip (191)
	Ziploc (1)
	zitools (15)

	zli (1)
	zlibbioc (54157)
	zoo (29)
	ZygosityPredictor (62)

Stats generated by https://github.com/Bioconductor/download_stats/