Package	Download_score
flowCore	2582
Biobase	49964
preprocessCore	14295
genefilter	11691
EBImage	2794
IRanges	54878
AnnotationDbi	36490
GenomicFeatures	18049
BSgenome	15419
MVCClass	154
Mfuzz	1394
AgiMicroRna	201
GenomeGraphs	61
GEOmetadb	276
affy	7766
AnnotationForge	1974
BiocCaseStudies	58
BCRANK	155
ChIPpeakAnno	988
clstutils	133
sva	7399
wateRmelon	863
SNAGEE	124
procoil	131
PWMEnrich	216
RankProd	284
Rbowtie	460
piano	402
PSICQUIC	53
rBiopaxParser	197
GeneticsPed	157
GeneSelectMMD	144
CSAR	152
mBPCR	136
mdqc	142
MEDME	128
metaSeq	130
MiChip	126
TFBSTools	3374
topGO	2748
UniProt.ws	473
weaver	137
RNAither	60
rsbml	175
BiocParallel	41983
made4	303
illuminaio	2780
IsoGeneGUI	54
KCsmart	139
limmaGUI	154
MLInterfaces	410
sigPathway	71
BeadDataPackR	549
annaffy	299
Rgraphviz	9148
ASSET	155
Ringo	177
ADaCGH2	147
CoCiteStats	140
snpStats	2064
ssize	163
TDARACNE	52
flowType	44
lol	37
GSVA	7310
motifStack	669
ontoCAT	38
chimera	50
clusterProfiler	21081
DEXSeq	1427
girafe	165
GRENITS	115
affyQCReport	64
pgUtils	13
GLAD	225
flowMeans	173
flowTrans	157
MotifDb	583
coRNAi	42
HilbertVisGUI	95
cnvGSA	136
fastseg	783
genomeIntervals	200
GOFunction	48
goseq	1438
hyperdraw	150
MSnbase	3046
BioNet	277
ddgraph	38
keggorthology	243
spade	31
PANR	129
PAPi	42
RIPSeeker	51
ITALICS	135
Roleswitch	43
lpNet	128
LVSmiRNA	45
AffyExpress	59
CNORfuzzy	139
CNORdt	132
ChromHeatMap	142
clonotypeR	48
ChemmineR	800
ReportingTools	557
BrainStars	47
affypdnn	56
ENVISIONQuery	46
triplex	141
ampliQueso	35
biocViews	4377
deltaGseg	119
affycomp	170
cn.mops	241
ecolitk	154
cycle	142
Gviz	3259
ArrayTV	41
ChAMP	716
exomePeak	48
ExiMiR	133
timecourse	155
tilingArray	178
Rolexa	33
BioMVCClass	147
antiProfiles	127
RTCA	136
mitoODE	39
Agi4x44PreProcess	21
TurboNorm	135
ReactomePA	2805
ReQON	62
VariantTools	175
TargetSearch	138
QuasR	362
GlobalAncova	981
CAGEr	284
iSeq	114
jmosaics	26
MLP	178
DECIPHER	2810
CGEN	130
omicade4	206
OmicCircos	237
AffyCompatible	72
CNAnorm	135
synapter	181
networkBMA	52
SwimR	34
cleanUpdTSeq	134
CMA	198
genomes	141
deepSNV	188
NormqPCR	212
nucleR	158
frmaTools	138
ProCoNA	35
BicARE	165
EDASeq	1669
fabia	210
BHC	86
flowUtils	72
flagme	125
MSstats	521
anota	142
DFP	143
prebs	127
epigenomix	133
MMDiff	32
spikeLI	118
Resourcerer	23
daMA	133
ensemblVEP	124
DOSE	19776
geneRecommender	137
cisPath	114
ChemmineOB	327
seqCNA	59
BufferedMatrixMethods	136
proteinProfiles	107
BiGGR	122
BufferedMatrix	139
snpMatrix	15
tRanslatome	219
CoGAPS	323
ontoTools	20
les	135
xmapcore	9
hexbin	37
SJava	21
cosmo	16
gmapR	169
gene2pathway	15
mmnet	31
ccrepe	183
COHCAP	56
roar	129
GeneOverlap	620
asmn	7
iClusterPlus	424
exonmap	14
pairseqsim	4
GeneRfold	7
Seqnames	0
GeneticsBase	12
edd	20
Clomial	113
GSCA	122
MIMOSA	50
MLSeq	181
unifiedWMWqPCR	92
gff3Plotter	4
flowCL	47
Sushi	74
TitanCNA	148
DMRforPairs	54
metaMS	221
CNEr	3314
hiAnnotator	137
GSAR	158
ssviz	127
netbiov	58
GSReg	122
OncoSimulR	124
metabomxtr	116
methylPipe	144
RUVnormalize	126
MBASED	121
compEpiTools	125
pepStat	116
interactiveDisplayBase	4803
miRNAtap	191
SNPRelate	1703
Rnits	120
GOexpress	143
GenomicInteractions	408
polyester	126
FEM	41
regionReport	178
EnrichmentBrowser	527
CFAssay	106
PAA	130
kebabs	163
SGSeq	320
ASGSCA	122
CoRegNet	58
geecc	36
Rqc	308
rRDP	125
mygene	356
tracktables	210
GenoView	16
proBAMr	118
genomation	674
mdgsa	34
gQTLstats	37
TRONCO	132
affydata	5
arrayQCplot	3
Repitools	312
zlibbioc	53994
mzR	3176
Rsamtools	23548
metahdep	128
ShortRead	6117
DESeq	183
annotate	17098
MassArray	114
limma	34833
Category	1513
eisa	57
bioDist	282
Vega	40
puma	169
rama	54
RchyOptimyx	46
pickgene	119
plrs	40
PING	142
plgem	160
prada	64
a4Base	184
flowBeads	127
fdrame	135
gcrma	1121
MassSpecWavelet	1676
mgsa	172
DESeq2	22154
altcdfenvs	159
vbmp	161
HELP	135
snm	168
SeqArray	908
SimBindProfiles	64
iterativeBMA	137
rbsurv	151
beadarray	654
bumphunter	2592
affycoretools	400
biovizBase	5015
ggbio	1842
OCplus	156
OLINgui	141
qcmetrics	142
widgetTools	1397
clst	132
xps	46
SBMLR	144
seqLogo	3702
SplicingGraphs	149
triform	48
minfi	2319
gaia	52
isobar	153
GeneMeta	163
logicFS	158
biocGraph	265
ChIPsim	153
cobindR	47
RWebServices	24
rqubic	149
BayesPeak	49
bgafun	52
cghMCR	159
DynDoc	1394
pcaMethods	5096
globaltest	1771
HTqPCR	102
CNVtools	45
HEM	140
RDRToolbox	182
idiogram	141
qrqc	58
msmsTests	282
REDseq	156
STRINGdb	1369
CorMut	42
birta	45
ExpressionView	53
pathifier	136
ctc	289
ArrayExpress	427
aCGH	230
twilight	160
RTopper	137
genefu	338
geNetClassifier	162
flowViz	943
ChIPseqR	162
minet	711
sagenhaft	130
SamSPECTRAL	183
segmentSeq	148
SeqGSEA	236
gCMAPWeb	38
crlmm	292
flowFlowJo	23
arrayQuality	228
SIM	141
paircompviz	123
pcaGoPromoter	39
pdInfoBuilder	182
AnnotationFuncs	49
CNTools	178
BiSeq	147
CORREP	56
bioassayR	135
genoset	54
hypergraph	185
ArrayExpressHTS	50
beadarraySNP	75
easyRNASeq	179
GGBase	59
OLIN	155
RbcBook1	204
joda	47
spliceR	37
BitSeq	59
ARRmNormalization	128
TSSi	43
TypeInfo	100
customProDB	154
RDAVIDWebService	66
Rdisop	444
ReadqPCR	232
GEOsubmission	138
spkTools	133
h5vc	151
SeqVarTools	455
webbioc	145
rfPred	126
graphite	3169
SAGx	63
RNASeqPower	221
GWASTools	636
spotSegmentation	46
iPAC	116
LPE	147
a4	161
IdMappingRetrieval	47
PADOG	325
PCpheno	52
maanova	75
flowMap	65
HTSFilter	231
trio	170
r3Cseq	149
NetSAM	158
NTW	120
ACME	176
imageHTS	65
tigre	148
quantsmooth	645
eiR	129
pvac	133
copa	140
CSSP	41
Icens	418
DirichletMultinomial	4645
phyloseq	5495
mzID	2956
GeneRegionScan	148
iBMQ	100
splicegear	54
MiPP	143
dks	111
PLPE	136
pcot2	63
GOSim	98
codelink	161
macat	79
CGHbase	382
HTSanalyzeR	51
domainsignatures	42
multiscan	132
NCIgraph	112
DeconRNASeq	307
DriverNet	117
BioSeqClass	51
PROcess	159
spliceSites	37
miRNApath	124
iChip	136
BaseSpaceR	137
pkgDepTools	73
ChIPXpress	114
flowPhyto	16
IPPD	42
GeneGroupAnalysis	10
CRISPRseek	173
cosmoGUI	15
Ruuid	18
PECA	136
RMAGEML	11
pamr	20
trackViewer	608
fbat	12
BEAT	129
Rdbi	17
COMPASS	148
BiocCheck	1639
messina	122
Rcpi	173
viper	733
rpx	338
Rariant	46
rflowcyt	17
simulatorAPMS	13
VariantFiltering	142
CoverageView	125
INPower	127
scsR	39
RefNet	37
CAFE	131
biocDatasets	10
monocle	3359
DEGreport	610
HDTD	103
oposSOM	155
riboSeq	0
Pviz	126
shinyMethyl	164
missMethyl	1090
quantro	266
MSnID	316
MSGFplus	37
derfinderHelper	505
ALDEx2	1217
FourCSeq	35
derfinder	506
COSNet	119
IMPCdata	102
PSEA	55
STATegRa	126
switchBox	146
flowCHIC	126
GenomicTuples	122
groHMM	114
facopy	25
csaw	513
exonfindR	0
paxtoolsr	109
nethet	131
PROPER	148
FlowSOM	1033
pxr	0
xcms	1581
affyio	7880
arrayQualityMetrics	464
clipper	149
CGHregions	153
GeneNetworkBuilder	142
GEOquery	9808
geneplotter	4598
EBcoexpress	138
GSEABase	8820
GOstats	1403
RBGL	9123
CNORfeeder	136
betr	46
VariantAnnotation	11360
sRAP	44
qvalue	18989
Rcade	56
pvca	285
qusage	412
Rchemcpp	36
RBioinf	146
pRoloc	276
qpcrNorm	146
clusterStab	157
factDesign	144
farms	70
flowClust	729
flowFit	39
FunciSNP	45
genArise	123
biomaRt	21735
rhdf5	20856
maskBAD	131
matchBox	110
MCRestimate	54
MeasurementError.cor	124
MergeMaid	58
metaArray	59
metagenomeSeq	1582
MethylSeekR	199
methylumi	1496
multtest	11904
affyPara	58
AGDEX	135
aroma.light	1834
vsn	4915
xmapbridge	118
sizepower	134
DiffBind	1098
intansv	141
maSigPro	337
GenomicRanges	45152
DSS	766
hapFabia	132
chipenrich	171
cummeRbund	266
BAC	51
stepNorm	139
SQUADD	56
TransView	102
safe	621
SCAN.UPC	174
SigFuge	128
siggenes	3160
staRank	86
TCC	267
ternarynet	120
categoryCompare	134
CGHcall	358
BUS	140
frma	173
ConsensusClusterPlus	2937
marray	1796
a4Preproc	184
htSeqTools	47
BAGS	138
goProfiles	166
Starr	50
ncdfFlow	1059
annmap	121
flowMerge	167
RCytoscape	37
gprege	41
GraphAT	150
annotationTools	162
cellHTS2	175
PICS	158
Risa	197
SLqPCR	139
BiRewire	210
bridge	57
PAnnBuilder	49
pathRender	140
a4Core	192
RPA	142
Heatplus	481
GeneticsDesign	49
affyILM	149
AffyRNADegradation	134
HMMcopy	371
RSVSim	132
Rtreemix	145
rTRM	170
rTRMui	123
sigaR	43
SNPchip	57
affxparser	1567
iterativeBMAsurv	122
GOSemSim	19166
OrganismDbi	2697
FGNet	142
GeneExpressionSignature	154
EasyqpcR	47
KEGGprofile	54
CellNOptR	184
chipseq	606
flipflop	36
dexus	49
cleaver	244
snapCGH	85
LBE	222
yaqcaffy	51
OTUbase	133
SRAdb	461
plw	57
KEGGgraph	5272
RCASPAR	111
copynumber	130
ppiStats	65
goTools	142
pint	41
plethy	54
MmPalateMiRNA	47
occugene	122
NOISeq	602
VegaMC	128
RNAinteract	90
RRHO	146
NarrowPeaks	46
nudge	44
diffGeneAnalysis	125
affyContam	167
Harshlight	146
RMAPPER	16
RmiR	50
attract	150
a4Reporting	153
hpar	286
OutlierD	54
dagLogo	140
gaga	148
gCMAP	45
PROMISE	138
ABarray	162
neaGUI	25
KEGGREST	36402
nem	64
SPIA	581
Streamer	136
MANOR	146
GeneAnswers	60
GEWIST	111
sscore	71
qpgraph	203
RamiGO	35
ddCt	163
msmsEDA	284
HilbertVis	209
flowPlots	119
iBBiG	150
agilp	150
tspair	56
gaggle	73
phenoDist	36
DEGraph	109
inveRsion	43
waveTiling	45
CAMERA	478
exomeCopy	197
bsseq	1407
DBChIP	51
ArrayTools	57
coGPS	131
GenomicAlignments	22853
apComplex	145
maDB	23
predictionet	46
matchprobes	12
AnnBuilder	11
iFlow	8
SemSim	6
PhenStat	124
geneRxCluster	135
flowBin	130
RTools4TB	8
GenomeInfoDb	55352
CopyNumber450k	25
savR	42
ABSSeq	174
sangerseqR	800
QDNAseq	339
UNDO	122
ChIPQC	375
makePlatformDesign	10
flowCyBar	113
alsace	41
AtlasRDF	25
GOTHiC	136
ELBOW	39
S4Vectors	55533
fastLiquidAssociation	125
NetPathMiner	112
GenomicFiles	1143
Rintact	9
RUVSeq	897
DupChecker	25
pRolocGUI	154
Polyfit	36
arrayMagic	9
MEIGOR	137
mQTL.NMR	29
Pbase	32
RSNPper	12
proteoQC	32
SemDist	117
M3D	31
MPFE	103
hiReadsProcessor	127
ClassifyR	337
MethylMix	152
rain	155
MGFM	119
flowcatchR	135
derfinderPlot	155
MAIT	194
BridgeDbR	129
seqTools	159
NGScopy	29
MBAmethyl	97
ToPASeq	35
mvGST	27
SigCheck	111
specL	124
saps	16
QuartPAC	88
gQTLBase	35
iSPlot	6
BeadExplorer	7
rgsepd	111
ChromoViz	8
AnalysisPageServer	30
SAGElyzer	8
cpvSNP	120
oligo	1740
BiocGenerics	57833
Clonality	56
impute	10601
survcomp	1344
hopach	314
panp	162
tweeDEseq	184
DNAcopy	4798
graph	19376
edgeR	23689
gage	838
pathview	4545
BiocInstaller	211
affylmGUI	171
BiocStyle	5427
biomvRCNS	134
ASEB	125
SpacePAC	111
shinyTANDEM	38
stepwiseCM	38
supraHex	365
randPack	127
PathNet	135
R453Plus1Toolbox	150
Biostrings	48233
XVector	49936
chopsticks	155
clippda	142
EBSeq	379
MBCB	130
mcaGUI	51
MEDIPS	184
methVisual	47
methyAnalysis	51
methylMnM	126
affyPLM	943
AnnotationHub	11504
sSeq	196
TEQC	152
trigger	140
ROntoTools	198
RpsiXML	62
plateCore	46
LPEadj	73
interactiveDisplay	152
maCorrPlot	124
maigesPack	83
MinimumDistance	154
convert	185
genoCN	118
Mulcom	139
bgx	114
DTA	125
vtpnet	132
DrugVsDisease	166
ROC	1109
tkWidgets	1401
iontree	36
lumi	1213
GraphPAC	113
SPEM	147
IdMappingAnalysis	43
fmcsR	263
epivizr	170
GENE.E	32
Cormotif	142
cellGrowth	40
makecdfenv	216
rtracklayer	20315
DEGseq	224
Rsubread	2134
cn.farms	137
simpleaffy	111
BRAIN	181
OrderedList	146
phenoTest	159
DAVIDQuery	32
logitT	66
manta	47
MotIV	61
rGADEM	373
GGtools	65
GSRI	139
cqn	316
AffyTiling	41
gwascat	608
BGmix	45
ffpe	140
parody	147
oligoClasses	1603
ScISI	61
XDE	154
VanillaICE	251
pdmclass	50
flowWorkspace	1105
CNORode	148
SANTA	111
flowStats	462
CALIB	57
adSplit	147
BADER	131
DART	136
KEGGSOAP	23
OSAT	151
EBarrays	202
explorase	44
rnaSeqMap	50
baySeq	466
cancerclass	354
CGHnormaliter	141
rHVDM	51
Rmagpie	142
RGalaxy	48
RLMM	130
RTN	215
rols	425
arrayMvout	138
flowFP	190
GeneSelector	48
ibh	125
iASeq	116
splots	209
SSPA	116
AllelicImbalance	155
reb	53
plier	179
RedeR	308
RefPlus	81
motifRG	45
PGSEA	91
oneChannelGUI	55
virtualArray	14
CRImage	153
RMassBank	171
gpls	259
PREDA	143
MineICA	136
SpeCond	145
inSilicoMerging	37
maPredictDSC	126
CancerMutationAnalysis	50
cellHTS	46
Genominator	52
microRNA	227
GraphAlignment	122
LMGene	55
HiTC	198
seqbias	65
NuPoP	136
HCsnip	35
chroGPS	49
lmdme	131
netresponse	142
nnNorm	142
casper	123
prot2D	32
dyebias	147
rTANDEM	45
a4Classif	156
charm	57
CexoR	133
flowQB	43
CNVrd2	130
TargetScore	136
SMAP	70
flowPeaks	201
DASiR	29
MiRaGE	135
DEDS	51
mosaics	224
lapmix	115
DNaseR	9
HybridMTest	164
SomatiCA	28
SLGI	63
LiquidAssociation	133
GSEAlm	153
inSilicoDb	34
bigmemoryExtras	40
MantelCorr	117
flowQ	42
rMAT	46
HTSeqGenie	61
openCyto	627
QUALIFIER	46
GeneGA	107
rSFFreader	36
dualKS	55
externalVector	15
PatientGeneSets	6
Rredland	9
GeneR	18
GeneTraffic	12
flowMatch	132
DMRcate	1092
biosvd	42
RdbiPgSQL	13
Mirsynergy	37
EDDA	42
sapFinder	41
ASSIGN	160
massiR	126
Basic4Cseq	135
FRGEpistasis	111
nondetects	64
SomaticSignatures	199
CompGO	39
GeneSpring	13
npGSEA	125
COPDSexualDimorphism	6
gaucho	32
metaseqR	43
compcodeR	144
ChIPseeker	1974
MeSHDbi	246
meshr	163
blima	127
flowClean	243
cosmiq	199
MoPS	29
msQC	0
wavClusteR	122
MethylAid	145
flowDensity	287
RGSEA	130
DOQTL	31
MultiMed	114
keggorth	7
stam	9
ballgown	556
STAN	44
metagene	51
erccdashboard	144
systemPipeR	1209
riboSeqR	130
MSGFgui	37
seqplots	41
IdeoViz	134
simulatorZ	35
TSCAN	619
EBSeqHMM	55
GOsummaries	56
pepXMLTab	119
Metab	131
focalCall	30
AIMS	360
GeneTS	8
gespeR	89
TPP	160
FlowRepositoryR	34
birte	27
EMDomics	140
mAPKL	41
TIN	116
diffHic	164
podkat	125
BrowserVizDemo	17
CAnD	38
ENCODExplorer	35
RCyjs	124
SIMAT	120
SVM2CRM	28
CODEX	147
FISHalyseR	112
GENESIS	378
BEclear	136
caOmicsV	27
seqPattern	758
RareVariantVis	121
erma	151
TimerQuant	0
INSPEcT	120
AnnotationHubData	327
Path2PPI	119
systemPipeRdata	0
OperaMate	18
traseR	123
EnrichedHeatmap	598
exprExternal	3
rCGH	146
DAPAR	162
GEOsearch	17
SICtools	104
Prostar	133
ChIPComp	122
hierGWAS	121
dupRadar	165
lfa	298
Imetagene	32
RCy3	846
R4RNA	643
globalSeq	107
dcGSA	100
goCluster	2
RNAprobR	33
RnaSeqSampleSize	149
RnBeads	310
ProtGenerics	11347
flowVS	158
conumee	214
ENmix	313
netbenchmark	28
RBM	120
bamsignals	968
ensembldb	9620
GreyListChIP	1004
IVAS	126
cytofkit	35
MatrixRider	115
BubbleTree	132
diggit	118
RUVcorr	120
skewr	114
PGA	32
fCI	114
Prize	28
ropls	1154
CNVPanelizer	122
iGC	117
myvariant	135
BBCAnalyzer	121
DiffLogo	130
SEPA	23
RiboProfiling	145
iCheck	118
metagenomeFeatures	31
NanoStringDiff	143
metaX	14
pathVar	36
synlet	113
miRLAB	132
OGSA	27
subSeq	131
y2hStat	3
DeMAND	100
ELMER	226
consensusSeekeR	123
iCOBRA	295
BioQC	164
biomformat	5543
transcriptR	119
profileScoreDist	102
Cardinal	260
gdsfmt	2096
coMET	89
ComplexHeatmap	16003
DMRcaller	146
gtrellis	168
InPAS	131
LowMACA	40
MethTargetedNGS	115
msa	1862
rGREAT	649
edge	154
regioneR	1787
LEA	633
BrowserViz	176
OmicsMarkeR	29
parglms	111
R3CPET	107
SELEX	127
sigsquared	117
MeSHSim	17
CausalR	123
eudysbiome	110
LOLA	249
ProteomicsAnnotationHubData	31
Oscope	126
mmgmos	4
FindMyFriends	33
Guitar	187
TCGAbiolinks	4675
SNPhood	118
RTCGA	474
miRcomp	121
HilbertCurve	146
gcatest	130
ldblock	143
GeneBreak	120
DChIPRep	30
sidap	0
widgetInvoke	7
mtbls2	0
multiClust	137
Rhtslib	23957
sincell	123
soGGi	379
immunoClust	123
cogena	140
NanoStringQCPro	51
pandaR	159
muscle	386
RTCGAToolbox	497
SummarizedExperiment	40459
rcellminer	141
pwOmics	159
HIBAG	166
canceR	142
chromDraw	121
GoogleGenomics	24
similaRpeak	120
ggtree	22233
mogsa	266
acde	129
seq2pathway	215
pmm	110
CopywriteR	49
mirIntegrator	122
IONiseR	132
XBSeq	32
motifbreakR	210
SNAData	3
reposTools	3
GenomeBase	2
sbgr	12
destiny	689
TarSeqQC	40
variancePartition	928
SISPA	44
rnaseqcomp	122
GUIDEseq	134
DNABarcodes	184
MEAL	141
ABAEnrichment	36
LedPred	98
genotypeeval	42
biobroom	257
SWATH2stats	114
CNPBayes	25
iSNetwork	5
scde	421
bim	5
applera	3
rfcdmin	4
FamAgg	125
normalize450K	99
kimod	17
lpsymphony	899
Chicago	137
QuaternaryProd	112
SC3	356
BasicSTARRseq	109
RGraph2js	109
metaCCA	136
RImmPort	87
GenRank	16
MBttest	104
biosigner	135
recoup	111
splineTimeR	121
SpidermiR	42
MultiAssayExperiment	6238
GMRP	108
BadRegionFinder	111
bacon	178
DNAshapeR	131
GenoGAM	25
CONFESS	122
ClusterSignificance	106
odseq	108
genbankr	68
InteractionSet	1814
CHRONOS	110
PureCN	199
Harman	175
bioCancer	118
msPurity	121
Pigengene	138
GEM	106
NetCRG	0
sights	112
crossmeta	140
ctsGE	111
GeneGeneInteR	103
IPO	216
BayesKnockdown	104
SVAPLSseq	14
PharmacoGx	257
GAprediction	97
Anaquin	109
signeR	125
readat	16
Pi	48
DEsubs	105
FitHiC	119
meshes	188
PathoStat	186
regsplice	105
SRGnet	19
crisprseekplus	39
BPRMeth	126
GRridge	31
RnaSeqGeneEdgeRQL	4
scDD	170
scone	151
treeio	21963
cellTree	28
sevenbridges	118
EmpiricalBrownsMethod	139
GenVisR	303
ROTS	238
chromPlot	226
nucleoSim	111
ExperimentHub	7696
garfield	100
Uniquorn	110
psygenet2r	98
CountClust	26
sscu	102
QUBIC	162
EBSEA	105
BatchQC	156
BgeeDB	158
pcaExplorer	384
oppar	115
pqsfinder	158
epivizrData	147
dSimer	13
covEB	105
MetCirc	123
esetVis	112
MGFR	106
AMOUNTAIN	115
methylKit	668
CVE	18
LOBSTAHS	139
rDGIdb	83
chromstaR	107
switchde	105
CellMapper	104
BaalChIP	118
geneXtendeR	106
uSORT	113
statTarget	143
geneAttribution	114
MutationalPatterns	315
annotatr	467
HelloRanges	141
phosphonormalizer	88
MWASTools	163
IWTomics	123
clusterSeq	115
RJMCMCNucleosomes	111
JunctionSeq	23
flowAI	550
tofsims	23
EWCE	277
tximport	3447
scater	7030
clustComp	117
cellity	114
MethPed	106
ExperimentHubData	269
genphen	23
OncoScore	113
EpiCluster	0
ISoLDE	88
CINdex	113
PCAN	114
isomiRs	161
Glimma	1035
MMDiff2	109
EGSEA	267
EGAD	118
diffloop	37
epivizrStandalone	112
normr	173
DeepBlueR	35
CytoML	445
ccmap	131
clusterExperiment	315
ASpli	143
recount	379
GRmetrics	140
MetaboSignal	155
YAPSA	131
BiocWorkflowTools	200
alpine	42
philr	195
gCrisprTools	112
synergyfinder	252
bigmelon	119
M3Drop	590
matter	244
TVTB	107
yarn	143
anamiR	15
CCPROMISE	106
proFIA	29
DelayedArray	42368
sparseDOSSA	36
ramwas	129
BUMHMM	131
gcapc	110
coseq	183
CrispRVariants	137
GSALightning	92
PanVizGenerator	23
ggcyto	794
splineTCDiffExpr	2
IHW	680
iCARE	172
contiBAIT	45
ExpressionAtlas	227
Mergeomics	117
SMITE	102
dada2	2431
HDF5Array	14646
doppelgangR	204
debrowser	154
DEFormats	252
AneuFinder	143
SwathXtend	105
Linnorm	197
miRNAmeConverter	115
scran	4650
DRIMSeq	295
MultiDataSet	1173
epivizrServer	139
pbcmc	11
LymphoSeq	120
ImmuneSpaceR	45
covRNA	106
Director	80
netprioR	95
fgsea	20049
qsea	119
MODA	109
ImpulseDE	14
SNPediaR	95
ASAFE	98
geneplast	137
maftools	2499
FunChIP	44
MADSEQ	108
RCAS	151
CancerSubtypes	78
eegc	51
LINC	15
SIMLR	208
CancerInSilico	31
SPLINTER	97
MAST	2081
MoonlightR	126
psichomics	112
StarBioTrek	39
yamss	113
flowPloidy	107
fCCAC	107
GOpro	153
KEGGlincs	114
chimeraviz	142
samExploreR	16
mimager	108
funtooNorm	110
POST	18
mapscape	87
DaMiRseq	130
cydar	132
BiocFileCache	25812
wiggleplotr	179
BLMA	118
BioMedR	5
biotmle	114
cellbaseR	123
msgbsR	104
zinbwave	835
RProtoBufLib	2471
biocinstaller	1
ClusterJudge	107
consensusOV	129
microbiome	1811
DMCHMM	103
Doscheda	112
M3C	595
IrisSpatialFeatures	6
miRmine	52
bsgenome	0
shortread	0
MIRA	116
slalom	138
mpra	118
progeny	473
bcSeq	107
signet	12
GOfuncR	336
flowclust	0
MetaNeighbor	138
discordant	131
karyoploteR	792
TCGAbiolinksGUI	35
MCbiclust	110
sampleClassifier	110
GISPA	39
multiOmicsViz	45
NADfinder	109
ImpulseDE2	22
GenomicScores	623
CATALYST	571
IMAS	106
RaggedExperiment	785
epiNEM	135
RIVER	106
pgca	88
RITAN	115
IsoformSwitchAnalyzeR	290
RTNsurvival	108
OPWeight	103
scoreInvHap	109
HiCcompare	248
GENIE3	1322
rexposome	133
zFPKM	164
DEP	586
Onassis	22
cytolib	2482
SPONGE	102
Rbowtie2	271
apeglm	3698
MSstatsQC	112
TMixClust	127
BASiCS	158
scfind	14
openPrimeR	172
chromVAR	1188
bnbc	202
DelayedMatrixStats	16052
anota2seq	124
PathwaySplice	14
JASPAR2018	5
methimpute	108
pcxn	54
scPipe	130
topdownr	111
loci2path	112
MAGeCKFlute	343
TFEA.ChIP	130
annbuilder	0
DMRScan	91
geneClassifiers	100
goSTAG	114
Logolas	15
RTNduals	115
swfdr	112
cellscape	95
timescape	112
MaxContrastProjection	17
IntEREst	107
branchpointer	129
Organism.dplyr	405
netReg	19
rqt	86
GenomicDataCommons	1009
flowTime	111
GA4GHclient	117
basecallQC	114
banocc	120
pathprint	15
PPInfer	217
ideal	133
metavizr	26
TSRchitect	24
heatmaps	291
IntramiRExploreR	101
coexnet	22
SingleCellExperiment	16154
mfa	138
beachmat	15690
diffuStats	117
oneSENSE	31
EpiDISH	673
SCnorm	151
CEMiTool	186
seqcombo	97
miRsponge	12
amplican	130
TFARM	102
seqCAT	114
biobase	1
cbaf	113
trena	33
ANF	112
PROPS	101
ivygapSE	105
MetaCyto	119
restfulSE	132
transcriptogramer	107
esATAC	129
chromswitch	33
gep2pep	102
LineagePulse	32
affyplm	0
omicsPrint	112
geoquery	1
rhvdm	0
ChIPexoQual	113
TCseq	522
splatter	444
REMP	118
EventPointer	121
twoddpcr	106
MIGSA	26
hicrep	13
motifcounter	106
STROMA4	35
AnnotationFilter	10848
BioCor	122
methylInheritance	108
semisup	102
ATACseqQC	393
ndexr	109
GA4GHshiny	110
TReNA	3
miRBaseConverter	168
methInheritSim	113
motifmatchr	1330
DASC	3
Scale4C	117
Rhdf5lib	23017
phenopath	129
epivizrChart	112
RVS	101
scmap	248
BiocSklearn	130
AUCell	2583
openPrimeRui	59
ChIPanalyser	113
multiMiR	316
InterMineR	94
TFHAZ	101
iranges	0
biostrings	1
SeqSQC	197
TnT	83
panelcn.mops	115
iterClust	38
methyvim	17
oncomix	102
ontoProc	232
rhdf5client	152
runibic	111
stageR	211
tenXplore	90
vulcan	104
mCSEA	138
CHARGE	13
pogos	140
srnadiff	88
enrichplot	20269
MetaGxOvarian	4
dmrseq	207
SummarizedBenchmark	37
perturbatr	15
phantasus	213
FELLA	170
decontam	1637
InTAD	106
igvR	156
CAGEfightR	261
sevenC	100
singleCellTK	345
singscore	1497
MSstatsQCgui	95
hipathia	209
RSeqAn	127
slingshot	1548
CAMTHC	11
Rmmquant	103
CellTrails	107
ipdDb	186
methylGSA	161
scruff	108
miRSM	105
LRBaseDbi	112
DEqMS	286
appreci8R	105
SIMD	100
sparsenetgls	91
COCOA	121
HiCBricks	164
tRNAdbImport	115
ProteoMM	120
artMS	123
compartmap	41
RNASeqR	16
MPRAnalyze	115
rScudo	99
annotationdbi	1
DelayedDataFrame	102
deco	20
plpe	0
rbgl	1
tkwidgets	1
genomicfeatures	1
dnacopy	1
seqlogo	0
roma	2
hmdbQuery	122
MACPET	20
powerTCR	311
DEScan2	110
tRNAscanImport	108
Sconify	100
vidger	155
diffcoexp	176
DEsingle	284
GateFinder	105
plyranges	1112
GARS	109
seqsetvis	124
missRows	103
diffcyt	450
TFutils	117
ChIC	24
SDAMS	107
TxRegInfra	16
netSmooth	113
TCGAutils	678
BiocVersion	60486
maser	159
GIGSEA	92
Ularcirc	103
qPLEXanalyzer	100
condcomp	7
OUTRIDER	205
strandCheckR	104
multiHiCcompare	156
ACE	136
REBET	100
SCBN	109
INDEED	82
ERSSA	104
BiocNeighbors	10891
mixOmics	2743
bayNorm	129
glmSparseNet	221
KinSwingR	102
abseqR	107
MSstatsTMT	274
universalmotif	912
tRNA	124
transite	108
PepsNMR	140
DNABarcodeCompatibility	85
ADAM	195
decompTumor2Sig	139
scTensor	105
IsoCorrectoRGUI	99
degseq	1
genomicranges	0
pkgdeptools	0
RGMQL	58
DropletUtils	2428
RcisTarget	1149
omicplotR	109
Trendy	105
ChIPSeqSpike	18
kissDE	107
DominoEffect	105
iSEE	494
martini	105
Rgin	18
GSEABenchmarkeR	126
SEPIRA	31
TissueEnrich	251
rWikiPathways	383
SparseSignatures	106
iCNV	109
CytoDx	124
mdp	101
SIAMCAT	165
PowerExplorer	15
RNAdecay	89
GDSArray	236
ccfindR	122
onlineFDR	81
kmknn	0
MetID	103
GeneAccord	22
coRdon	208
tximeta	997
HPAanalyze	183
NormalyzerDE	213
hierinf	85
OMICsPCA	108
IsoCorrectoR	127
levi	82
LoomExperiment	623
countsimQC	286
FCBF	43
MTseeker	7
PrecisionTrialDrawer	19
topgo	0
snpmatrix	0
scFeatureFilter	100
edger	1
drawProteins	204
omicRexposome	112
GDCRNATools	232
BiFET	113
CTDquerier	106
DEComplexDisease	24
gsean	107
BEARscc	74
iteremoval	20
TTMap	105
CellScore	101
ddPCRclust	124
MDTS	95
GeneStructureTools	116
scmeth	107
adaptest	13
ASICS	137
IMMAN	98
ORFik	194
OmaDB	229
RandomWalkRestartMH	48
BioNetStat	68
BiocOncoTK	68
iasva	110
FastqCleaner	124
sigFeature	303
gwasurvivr	136
icetea	99
sesame	817
slinky	19
mlm4omics	6
NBSplice	23
consensus	98
brainImageR	6
BUScorrect	103
celaref	113
EnhancedVolcano	5288
plotGrouper	92
nuCpos	96
BiocPkgTools	171
XINA	97
FoldGO	36
MetNet	104
primirTSS	98
breakpointR	113
cicero	258
consensusDE	107
AssessORF	189
QSutils	171
ExCluster	86
NeighborNet	32
AffiXcan	102
gpart	22
HIREewas	101
Wrench	1576
cTRAP	115
BDMMAcorrect	35
TimeSeriesExperiment	21
VCFArray	101
cntools	1
logitt	1
gostats	1
category	1
rgraphviz	2
bayseq	1
PAIRADISE	137
Rhisat2	215
adductomicsR	104
topconfects	186
bigPint	28
phemd	28
SpectralTAD	117
Modstrings	144
CoRegFlux	8
evaluomeR	104
PrInCE	101
qsmooth	177
RcwlPipelines	108
CHETAH	138
MOFA	10
ssrch	95
PAST	97
infercnv	1168
TPP2D	99
celda	780
pipeFrame	146
VennDetail	299
XCIR	12
KnowSeq	106
rsamtools	1
AWFisher	105
Maaslin2	945
onechannelgui	1
GenomicOZone	115
SigsPack	93
calm	82
debCAM	106
SharedObject	131
microbiomeDASim	91
pwrEWAS	26
methylCC	111
flowSpy	8
MethCP	16
ssPATHS	94
tradeSeq	566
MACSQuantifyR	80
MSstatsSampleSize	24
oppti	91
RNAsense	91
cliqueMS	131
selectKSigs	93
CluMSID	96
PCAtools	1223
divergence	93
doseR	103
scds	486
projectR	122
mbkmeans	371
Xeva	160
BANDITS	123
ADAMgui	108
TreeSummarizedExperiment	2091
nanotatoR	33
NBAMSeq	192
CopyNumberPlots	147
GladiaTOX	94
HumanTranscriptomeCompendium	52
lipidr	159
scAlign	18
RNAmodR.RiboMethSeq	104
ViSEAGO	144
PhyloProfile	111
ncGTW	171
BUSpaRse	220
APAlyzer	118
Qtlizer	98
lionessR	106
Spaniel	117
waddR	83
target	102
signatureSearch	190
PERFect	34
peakPantheR	97
pulsedSilac	13
BioTIP	114
GCSscore	23
netboxr	16
biomart	1
widgettools	1
graper	95
cola	161
cytofast	12
geneticsbase	0
GAPGOM	19
OVESEG	113
Melissa	100
rmelting	101
atSNP	122
BioMM	22
pram	105
DepecheR	112
hypeR	149
CellBench	163
pathwayPCA	115
AMARETTO	198
sitePath	103
OmicsLonDA	25
HCABrowser	10
dcanr	182
SynMut	97
StructuralVariantAnnotation	222
animalcules	249
enrichTF	40
mnem	133
RepViz	98
sRACIPE	109
arrayqualitymetrics	0
MetaVolcanoR	55
MMAPPR2	26
RNAmodR.ML	99
SBGNview	190
circRNAprofiler	113
SCANVIS	108
gemini	85
HiLDA	104
proDA	254
VariantExperiment	80
IgGeneUsage	95
fcScan	108
sojourner	20
SEtools	207
flowSpecs	117
ReactomeGSA	252
LinkHD	107
ALPS	12
SAIGEgds	139
blacksheepr	110
schex	167
DEWSeq	102
scDblFinder	1663
OmnipathR	738
methrix	129
fcoex	19
MEB	94
GmicR	104
gscreend	101
brainflowprobes	37
BiocSet	351
cummerbund	1
MBQN	102
ceRNAnetsim	83
chippeakanno	0
gseabase	0
iterativebmasurv	1
RCM	108
epihet	19
SMAD	93
Rcwl	104
BiocSingular	12702
alevinQC	126
CNVRanger	125
fishpond	263
miRspongeR	94
Structstrings	129
DeMixT	130
GNET2	96
PoTRA	16
qckitfastq	110
proBatch	29
SpatialCPie	120
batchelor	3929
survtype	98
TNBC.CMS	33
CellMixS	117
ngsReports	115
DiscoRhythm	116
profileplyr	257
scRecover	101
scMerge	493
SubCellBarCode	104
metagene2	117
netboost	91
gpuMagic	89
SQLDataFrame	99
RNAmodR	109
RNAmodR.AlkAnilineSeq	98
TOAST	445
scGPS	124
Autotuner	11
AlphaBeta	98
scBFA	103
muscat	539
brendaDb	103
SingleR	4294
gramm4R	10
deltaCaptureC	95
idr2d	95
CrossICC	5
biscuiteer	112
ASpediaFI	20
scPCA	127
CNVfilteR	99
HCAExplorer	8
MMUPHin	185
MOSim	109
DMCFB	102
scTGIF	198
mitch	97
geometadb	1
arrayexpress	0
biobtreeR	87
easyreporting	96
EnMCB	101
scMAGeCK	12
reconsi	89
netDx	48
struct	164
GeneTonic	312
clustifyr	188
TreeAndLeaf	152
SCOPE	108
rrvgo	530
cmapR	441
TAPseq	105
exomePeak2	82
EpiTxDb	99
GCSConnection	11
sarks	94
NoRCE	97
BRGenomics	69
snapcount	99
scHOT	101
MatrixGenerics	41754
scClassify	149
SynExtend	101
CiteFuse	118
optimalFlow	102
PloGO2	37
sangeranalyseR	222
org.Hs.eg.db	15
BrainSABER	15
flowCut	153
corral	113
HCAMatrixBrowser	4
fmrs	137
ToxicoGx	108
pipeComp	99
CytoTree	16
scCB2	100
MesKit	120
ILoReg	97
ggtreeExtra	1123
Omixer	98
HPAStainR	14
VplotR	104
Spectra	1842
ResidualMatrix	3766
SeqGate	97
periodicDNA	91
MSstatsPTM	202
GCSFilesystem	10
preciseTAD	101
MethReg	90
systemPipeShiny	105
GenomeInfoDbData	18
BayesSpace	285
microbiomeExplorer	110
AnVILPublish	101
musicatk	120
MOGAMUN	93
tidySummarizedExperiment	345
customCMPdb	107
PhosR	157
SCFA	90
moanin	202
ReactomeContentService4R	94
VarCon	89
splines	0
stats4	1
tools	0
utils	0
GenomicDistributions	142
rstudio	0
string	0
methods	0
compiler	0
pga	0
hicbricks	0
labeling	57
geneLenDataBase	10
hgu133plus2.db	7
GO.db	15
Homo.sapiens	6
degraph	1
dearseq	232
BgeeCall	89
SimFFPE	91
DAMEfinder	100
DIAlignR	60
basilisk.utils	3197
structToolbox	151
ctgGEM	11
scTHI	91
eisaR	144
combi	123
rhdf5filters	20244
RNAAgeCalc	110
cytomapper	325
dpeak	27
AnVIL	506
methylSig	119
TBSignatureProfiler	93
CARNIVAL	188
spqn	92
GGPA	87
rfaRm	92
weitrix	100
metaseqR2	117
peco	94
ROSeq	103
sparseMatrixStats	15513
multicrispr	100
simplifyEnrichment	991
multiGSEA	170
PeacoQC	257
MouseFM	185
RadioGx	102
wpm	103
calib	0
escape	436
MultiBaC	115
SpatialExperiment	4781
transomics2cytoscape	108
hummingbird	89
uncoverappLib	95
QFeatures	2593
UMI4Cats	93
Rfastp	182
ANCOMBC	1242
SCATE	23
RIPAT	29
FilterFFPE	103
metabolomicsWorkbenchR	116
FScanR	19
aggregateBioVar	110
tomoda	100
AnVILBilling	90
GWAS.BAYES	98
ExperimentSubset	111
bambu	298
dasper	16
CellaRepertorium	30
densvis	1306
tidySingleCellExperiment	237
AlpsNMR	123
mina	78
SplicingFactory	86
CNVgears	34
bnem	99
parallel	1
tcltk	1
UTAR	0
facets	0
ttgsea	91
mumosa	109
BumpyMatrix	415
base	1
grDevices	0
sigpathway	1
PoDCall	69
omicsmarker	0
prostar	0
rlang	406
brew	28
RColorBrewer	9
simpleSingleCell	0
CSSQ	93
PubScore	12
packFinder	103
frenchFISH	81
tscR	18
dittoSeq	1360
tidybulk	334
receptLoss	88
ribor	100
ribosomeProfilingQC	122
Dune	85
ROCpAI	86
vasp	7
HIPPO	94
BiocDockerManager	17
CoreGx	269
glmGamPoi	4888
SingleCellSignalR	239
MsCoreUtils	3522
FRASER	149
scry	291
distinct	246
spicyR	196
TADCompare	118
DegNorm	99
SPsimSeq	190
Rtpca	106
scDataviz	114
RegEnrich	108
zellkonverter	1551
Nebulosa	1228
idpr	108
ISAnalytics	77
BiocIO	19516
proActiv	108
ncRNAtools	98
rsemmed	84
MSPrep	178
ChromSCape	103
MSstatsTMTPTM	6
NanoMethViz	128
biocthis	264
marr	95
VERSO	89
MSstatsConvert	442
famat	96
GSgalgoR	93
MSEADbi	7
ADImpute	114
NewWave	113
megadepth	170
pageRank	88
SpatialDecon	225
RLassoCox	92
graphat	1
BSgenome.Hsapiens.UCSC.hg19	7
stats	0
DEXICA	0
flowGraph	85
vcfR	1
datasets	0
grid	1
PFP	13
dichromat	3
magrittr	8
sendmailR	1
KEGG.db	1
NPARC	112
CeTF	117
pmp	145
rSWeeP	97
basilisk	3304
MEAT	99
gmoviz	95
ExploreModelMatrix	229
MicrobiotaProcess	507
regutools	111
OpenStats	85
iSEEu	153
GPA	94
timeOmics	126
randRotation	84
LACE	182
MOMA	100
cBioPortalData	360
BSgenome.Hsapiens.UCSC.hg38	10
scuttle	9153
getDEE2	96
GWENA	250
GSEAmining	103
padma	102
bluster	5615
infinityFlow	117
rebook	169
snifter	164
POMA	208
TileDBArray	114
nearBynding	91
recountmethylation	114
velociraptor	180
TimiRGeN	29
msImpute	233
rnaEditr	102
spatialHeatmap	222
scp	243
recount3	296
MOFA2	553
scRepertoire	621
Informeasure	89
lefser	547
cfDNAPro	117
metabCombiner	141
Herper	148
metapod	4688
shinyepico	98
affio	0
censcyt	96
GEOfastq	114
nempi	95
graphics	0
CAEN	86
ga4ghclient	0
cindex	0
bitops	116
PFAM.db	11
TxDb.Hsapiens.UCSC.hg19.knownGene	6
CONSTANd	91
InteractiveComplexHeatmap	409
scClassifR	6
NanoStringNCTools	385
ORFhunteR	94
TrajectoryUtils	1908
HiCDCPlus	128
MACSr	127
Summix	88
midasHLA	90
TrajectoryGeometry	76
MsBackendMgf	460
OSCA.workflows	29
OSCA.intro	51
CelliD	218
fedup	91
BioNERO	259
methylscaper	122
geva	93
mirTarRnaSeq	103
CIMICE	92
epidecodeR	89
conclus	10
CNViz	94
cellmigRation	87
tricycle	240
quantiseqr	547
FEAST	156
msqrob2	191
GenomicSuperSignature	106
MatrixQCvis	188
multiSight	15
SingleMoleculeFootprinting	102
DExMA	100
fgga	89
epigraHMM	100
supersigs	177
rawrr	195
spiky	86
dStruct	86
BUSseq	99
NanoTube	119
segmenter	101
svaNUMT	91
Dino	95
NeuCA	51
spatzie	83
enhancerHomologSearch	84
scanMiRApp	92
metapone	93
transformGamPoi	111
orthogene	356
ggmsa	543
nullranges	187
biodbHmdb	102
CyTOFpower	57
benchdamic	98
surfaltr	89
netOmics	24
RLSeq	24
txcutr	89
MSstatsLiP	114
RiboCrypt	91
scatterHatch	85
sccomp	132
BSgenome.Hsapiens.NCBI.GRCh38	1
clusterprofiler	1
KaryoploteR	0
RiboDiPA	96
SOMNiBUS	84
PhIPData	106
autonomics	94
OSCA.basic	19
lisaClust	168
mia	1430
drugTargetInteractions	98
barcodetrackR	94
DelayedRandomArray	99
awst	94
HubPub	145
POWSC	103
interacCircos	96
ReactomeGraph4R	50
systemPipeTools	95
sechm	200
diffUTR	81
RCSL	98
cosmosR	127
Rbec	92
csawBook	4
scShapes	86
VAExprs	85
cageminer	102
genomicInstability	105
veloviz	86
ggspavis	222
svaRetro	92
scAnnotatR	201
rGenomeTracks	91
ODER	10
MicrobiomeProfiler	157
imcRtools	256
epistack	92
biodbLipidmaps	34
Cepo	153
deconvR	110
cliProfiler	89
TargetDecoy	103
mosbi	92
rprimer	110
CNVMetrics	95
ggmanh	269
crisprBase	154
BOBaFIT	94
coMethDMR	106
IlluminaHumanMethylation450kmanifest	6
VGAM	12
mulcom	1
ichorCNA	0
ebimage	0
SCArray	109
GeomxTools	385
planet	215
ramr	93
fobitools	100
Travel	5
hca	97
miQC	149
MsBackendMassbank	110
PhenoGeneRanker	73
dce	83
OSCA.advanced	13
OSCA	6
dir.expiry	3285
memes	250
CytoGLMM	101
condiments	132
cyanoFilter	93
wppi	76
MungeSumstats	930
decoupleR	1250
MSstatsLOBD	91
KBoost	80
treekoR	108
XNAString	95
HGC	99
MQmetrics	17
cbpManager	93
BloodGen3Module	137
vissE	142
DelayedTensor	95
m6Aboost	87
scanMiR	110
FLAMES	113
FindIT2	96
mitoClone2	109
iPath	81
BentoBox	0
GEOexplorer	103
spatialDE	132
traviz	68
methylclock	196
BioPlex	8
ProteoDisco	91
pairkat	120
sparrow	365
MsBackendRawFileReader	97
biodbKegg	68
biodbUniprot	88
scTreeViz	96
NxtIRFcore	15
synapsis	84
GeoDiff	104
pengls	80
netZooR	89
hermes	251
GBScleanR	116
ScaledMatrix	12477
MsFeatures	1370
VaSP	98
TraRe	12
MAGAR	122
MetaboCoreUtils	1747
satuRn	288
IRISFGM	20
ModCon	80
PDATK	173
ComPrAn	90
InterCellar	108
miaViz	317
SingleRBook	3
airpart	107
sitadela	91
LRcell	91
ptairMS	85
tLOH	88
miloR	439
immunotation	92
mistyR	138
epialleleR	99
granulator	153
DeepPINCS	91
ppcseq	95
biodb	142
OSCA.multisample	15
csdR	86
BindingSiteFinder	96
MAI	99
rmspc	78
plotgardener	245
bugsigdbr	249
tanggle	113
scReClassify	101
atena	99
tripr	88
HPiP	96
TRESS	99
microbiomeMarker	384
biodbChebi	103
cytoKernel	106
monaLisa	198
easier	129
CellBarcode	106
Cogito	93
miaSim	114
mfuzz	0
targetsearch	0
bayespeak	0
PanomiR	97
CompoundDb	257
biodbNci	98
single	42
ASURAT	99
cytoMEM	127
DepInfeR	86
extraChIPs	120
mbOmic	10
terraTCGAdata	98
MuData	103
BiocBaseUtils	6748
BiocManager	358
formatR	16
katdetectr	98
proteasy	24
scMET	85
RedisParam	84
goSorensen	99
MASS	347
globals	54
zenith	133
bit64	113
bit	136
blob	35
memoise	8
checkmate	198
BMA	1
leaps	10
openssl	406
future.apply	160
plotly	61
tidyr	206
uwot	132
findpython	9
bayesplot	8
bigassertr	0
epiR	2
enc	0
extraTrees	0
rJava	112
expm	9
stringdist	12
geosphere	8
ggsignif	6
here	1
webshot	15
klaR	4
xmlparsedata	0
mice	11
loo	13
mlbench	9
shinyjs	4
corpcor	1
desc	62
remotes	149
sfsmisc	3
devtools	13
pkgload	272
sessioninfo	5
roxygen2	151
docopt	5
dtw	0
plotmo	2
bigreadr	0
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statmod	2
sparklyr	8
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RcppAnnoy	30
circlize	33
shape	53
Cubist	0
plyr	55
scales	70
knitr	239
evaluate	355
highr	155
RAthena	7
gplots	136
RPostgres	106
RandomFields	0
RandomFieldsUtils	0
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Rdpack	16
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fansi	100
hms	25
readr	77
recipes	43
ipred	27
coloc	15
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reshape	1
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packrat	8
paws.storage	110
paws.security.identity	13
paws.cost.management	13
r2d3	1
rcdk	7
Matrix	390
rpart	50
nloptr	53
SparseM	64
sp	61
restfulr	7
FDb.InfiniumMethylation.hg19	6
perm	8
samr	6
sparsesvd	13
Signac	16
JASPAR2020	6
waiter	8
gsmoothr	5
R.devices	8
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FlowSorted.CordBloodCombined.450k	10
isva	5
org.Rn.eg.db	10
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randomcoloR	6
agricolae	11
NADA	6
truncnorm	3
Rfast	15
susieR	14
furrr	9
tidytree	20
amgen.okta.client	0
htmltools	279
campsismod	0
deSolve	3
webmockr	0
evd	4
xaringanthemer	1
dittodb	0
fork	1
gamlss.dist	3
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R.rsp	1
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IlluminaHumanMethylationEPICanno.ilm10b4.hg19	6
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RUnit	8
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signature.tools.lib.v2.1	0
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h2o	3
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rngtools	1
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FuseSOM	94
HiContacts	151
simpleSeg	101
cardelino	100
MALDIquant	5
codetools	90
htmlwidgets	80
gsrc	0
ASExtras4	0
aplot	39
planttfhunter	105
future.callr	1
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fracdiff	4
huxtable	4
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units	18
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timechange	162
rngWELL	0
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ks	4
mclogit	0
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EasyABC	0
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leafcutter	0
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mobster	0
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mvabund	0
np	0
oompaData	7
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bench	0
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asht	0
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BSgenome.Mmusculus.UCSC.mm9	0
signature.tools.lib	0
signature.tools.lib.back	0
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vapour	0
org.Sc.sgd.db	1
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polysat	0
biganalytics	0
pd.atdschip.tiling	0
stringfish	5
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GOplot	0
rtkore	0
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gWidgets2tcltk	0
rrBLUP	1
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biodbMirbase	17
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standR	169
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protGear	93
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borealis	94
omicsViewer	91
rifi	86
SpotClean	125
snow	4
spaSim	93
ATACCoGAPS	51
factR	92
XVectorb	0
org.Mm.eg.db	12
digest	396
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RCurl	144
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httr	60
ica	3
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StanHeaders	15
emdbook	8
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rvest	158
tinytex	342
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lintr	113
logistf	7
mclust	11
microbenchmark	12
segmented	27
commonmark	227
conflicted	8
config	15
rex	1
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git2r	33
testthat	272
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tune	11
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locfit	74
ggplot2	286
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ape	56
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data.table	339
readxl	33
prettyunits	60
openxlsx	99
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callr	247
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processx	267
ps	321
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gower	18
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pander	2
party	92
paws	13
paws.compute	98
pryr	8
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gmp	14
gert	116
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nnet	37
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egg	6
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TxDb.Mmusculus.UCSC.mm10.knownGene	6
R.filesets	8
aroma.core	8
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GWASExactHW	7
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shiny	270
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duckdb	8
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modelr	17
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qs	9
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sm	1
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e1071	93
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ash	6
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IlluminaHumanMethylation450kanno.ilmn12.hg19	6
IlluminaHumanMethylationEPICanno.ilm10b2.hg19	6
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proto	1
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R.matlab	1
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repr	5
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signal	1
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SNPlocs.Hsapiens.dbSNP151.GRCh38	0
spatstat.core	9
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topicmodels	1
tmle	3
uroot	0
akima	0
ABSOLUTE	1
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biom	0
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pd.hg.u133.plus.2	0
pd.mouse430.2	0
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TCGAbiolinksGUI.data	1
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pingr	15
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deal	0
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C50	0
Bioconductor	0
scRNAseq	1
graphql	1
rj	1
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SPACox	0
sROC	0
tkrgl	0
TxDb.Hsapiens.UCSC.hg38.knownGene	1
lixoftConnectors.2	0
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hgug4112a.db	0
org.Bt.eg.db	0
org.Ce.eg.db	0
org.Gg.eg.db	0
org.Cf.eg.db	0
org.Dr.eg.db	1
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dae	0
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TREG	89
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UCell	1545
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eds	382
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deseq	1
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lambda.r	1
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earth	2
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cpp11	255
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nlme	208
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DT	87
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clipr	5
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zoo	29
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timeDate	34
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coda	15
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paws.common	113
paws.networking	13
paws.machine.learning	13
paws.application.integration	13
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egor	0
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name	0
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DegCre	66
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altair	0
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IlluminaHumanMethylationEPICv2manifest	1
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ufs	0
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argusDS.gamboostLSS	0
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schoolmath	0
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blocksdesign	1
turner	1
paran	1
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chevreulPlot	3
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chromVARmotifs	0
rLynx	0
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ympes	1
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phateR	0
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TAF	0
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mist	5
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cpp11armadillo	1
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redison	0
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islify	0
mitology	0
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jazzPanda	7
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lest	0
lutz	0
limorhyde2	0
Mus.musculus	0
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coloRz	0
vmrseq	0
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citril.metadata	1
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chevreulProcess	4
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s3	1
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SVP	3
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plotthis	1
qs2	1
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Transite	0
scHiCcompare	0
pathMED	0
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irGSEA	1
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adfcspec	0
rochedata	0
zebra	0
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cpp11bigwig	1
minga	1
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ondisc	1
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dryR	0
diffCircadian	0
fission	0
PoiClaClu	0
lessR	0
rvinecopulib	0
MuSiC	1
imageTCGA	0
rtfmt	1
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argusDS.studio.visualisations	1
vtable	1
koalaNetworkDriveData	1
seraut	1
bibliometrix	1
quanteda.textstats	1
emoji	1
switchstep	1
magittr	1
legocolors	1
rmail	1
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ESTIMATE	1
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SNPlocs.Hsapiens.dbSNP144.GRCh37	0
tigerstats	0
zeitgebr	0